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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062396 ID=TCONS_00062396|Name=TCONS_00062396|organism=Clytia hemisphaerica|type=transcript|length=4920bpRun BLAST on NCBI transcript from alignment at scaffold_364:58847..88250- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062396 ID=TCONS_00062396|Name=TCONS_00062396|organism=Clytia hemisphaerica|type=transcript|length=29404bp|location=Sequence derived from alignment at scaffold_364:58847..88250- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062396 vs. Swiss-Prot (Human)
Match: RHG20 (Rho GTPase-activating protein 20 OS=Homo sapiens GN=ARHGAP20 PE=1 SV=2) HSP 1 Score: 279.641 bits (714), Expect = 1.050e-76 Identity = 176/522 (33.72%), Postives = 291/522 (55.75%), Query Frame = 2
Query: 1046 RRNPPDLGEDKE-KKTPSSAEEQELHISPSP--STHLTTKRLYIQEGPVKLSTATSTNERYLFLFNDLLIVAKPKSTSTFKLKERIRVSELWLSNCIDEVTETTITHEKAFVIGWPTTNYVASFNLIEEKDLWYNALQKSINERKENEEPKEITIKVINKTQDDNTQPQQTCQVTVSCKDEAKTVLKSSLEQFQ-QGNEDPSEYQLMI-LAKDGSTFPLIGHELPYAIRMNHIRALHEYTHDENDNH----------YEQSGVLDDDGKLQFIVKKAKKGNTRNNLDIAXXXXXXXXXXXXXXXWAMNKTTVK--PAFNPQDSLPIGKLFRNPLIQLSNDENVIPKPILDMLVQLFRRGPATSGIFRKPASARAAKQIRSLLDEGKDVDFEETSSIVIATVLKEFFRTLPESLIISDQYDNLLAAKSITDSDAKLETIKTILRQFPKCHYETLMRFLCILHHINRFSNRNKMTAYNLAICVSPSIMFLPANT--KMVTEQAAGGSDIVCFMIENYIKIFSEE 2554
RR+ P L DK +K P++ + + S+ + + R + +G +L ER+LFLFNDL +VAK K + FK+K +I+++++W ++C+DEV E K+FV+GWPT N+VA+F+ E+KD W + LQ+ IN KE + PK I +K+ K D + +TV D A V+ SL G+E +YQL + K+ + +PLIGHE PY I+M+H+R T D+ EQ L + + QFI+K ++ + D + K + W + T + P+ +P +P G+LF L + ++N +PKP+LDML L ++GP T GIFR+ A+ ++ ++++ L+ G +V + S VIA+VLK+F R +P S+ SD YD+ ++ + + K+ T++ +L Q P+ + L +LH+I + S+ N+MTA+NLA+CV+PSI++ PA++ ++ E S ++ F+IEN ++IF EE
Sbjct: 44 RRSAPSLILDKALQKRPTTRDSPSASVDTCTFLSSLVCSNRTLLIDGRAELKRGLQRQERHLFLFNDLFVVAKIKYNNNFKIKNKIKLTDMWTASCVDEVGEGNTNAMKSFVLGWPTVNFVATFSSPEQKDKWLSLLQRYINLEKEKDYPKSIPLKIFAK---DIGNCAYSKTITVMNSDTANEVINMSLPMLGITGSE--RDYQLWVNSGKEEAPYPLIGHEYPYGIKMSHLRDSALLTPGSKDSTTPFNLQEPFLMEQ---LPREMQCQFILKPSRLAAAQQLSDSGHKTFKRRRSIINWAFWRGSSTHLDNLPS-SPTSPMP-GQLFGISLPNICENDN-LPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEFTKKVSLLIQFLIENCLRIFGEE 554 The following BLAST results are available for this feature:
BLAST of TCONS_00062396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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