TCONS_00062391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062391
Unique NameTCONS_00062391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062391 ID=TCONS_00062391|Name=TCONS_00062391|organism=Clytia hemisphaerica|type=transcript|length=1265bp
AATAGCCTCACAATCAAATTAGTAATTACTAAAAACTGTATCACTATGTA
GCATGCCAACAAACGTTTATTGTCATATAATGACGTGCTTAAAGAATTCA
TTATCGAGAGATCTTTTTGTAGTGTTTTCTACCCTATGAACTTTCTTAAG
AGAGAATTTTTATGAGCATGAGCGGGGGAAGTAGTGAAAAAAGTAAAAGG
TTTCTAAATTCGAAACAGATTTTAATGACAATTTGTATTTATGGATATTT
GACAGTTTCGAAGAGCCGGACGTAGAGAATCTTAAAAATGGTTACATTTa
tgctgtttttgatgattgtTAAAGTTGgtgtattttgcagaccagCAATC
AACAAGAGAAATTTCACAAGTGCATTTGATCAAATACAATGGAACAATGA
ACACATCTTAAATTCTGAAGATTCTGAAGACCTTTTCGAAGATGATATTG
TCAAGTCTCCCGCAATCGATGAAATTATCAATCGCAAAATAACGTCACCA
GGACGACAACGACGTGACGTCATCACTGGACCATATGCATGGCCAAATGG
GAAGGTTCCTTACGTATTTGCTGATGATTATCCCGAGTTCAGTAAATTTT
GGGTGAGATCGTCCATGgatgaaattcaaaaagtcagtTGTGTTCAATTT
ATTGAAAGAACTGACGAGAAAGATTACATCAAAATCGTCAACGGTACACA
GTGTTATTCATCCATTGGTCGACGTGGCTCGAACCAGACGTTATCTCTCG
GAGACAATTGTCTTTCAGATTCGATTATTCAACACGAATTATTGCACGCC
CTTGGTTTCTTTCATGAACAATCGAGACTAGAAAGAGATTATTTTGTTAC
CGTGCACTGGGATAATATTATCAAAGGAAAAGAACACAATTTCGAGAAGT
ATGGGTTGGGTGAAGCATCACATTTAGATGAACACTACGACACAAAATCT
CTCATGCATTACTCGAATTACATCTTCGCGGTCAACGAAAGCAAAATGAC
GATCTCATCGAAATCCAACGCCTCAGAATCTCTCGGAGGATTTGAAATGA
CCGACACGGACGTTCGACAATTGAACAAATTTTACAGCTGTCCATGTGCA
GATCATATGTTCGGCTGTGAGTTTATTACAAGCATGTGTGGACAGTTTAG
GACTCAACAGTATTGTCAGAAAAGTTGTGGCTTCTGCCACACTAGCGAGA
ATCCTCCAATGTCTTCAACGGTTTCCTCTTTAACCACAACCATGTCAAAT
AATACAACAACGTCC
Run BLAST on NCBI

transcript from alignment at scaffold_364:312915..318988+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062391 ID=TCONS_00062391|Name=TCONS_00062391|organism=Clytia hemisphaerica|type=transcript|length=6074bp|location=Sequence derived from alignment at scaffold_364:312915..318988+ (Clytia hemisphaerica)
AATAGCCTCACAATCAAATTAGTAATTACTAAAAACTGTATCACTATGTA
GCATGCCAACAAACGTTTATTGTCATATAATGACGTGCTTAAAGAATTCA
TTATCGAGAGATCTTTTTGTAGTGTTTTCTACCCTATGAACTTTCTTAAG
AGAGAATTTTTATGAGCATGAGCGGGGGAAGTAGTGAAAAAAGTAAAAGG
TTTCTAAATTCGAAACAGATTTTAATGACAATTTGTATTTATGGATATTT
GACAGTTTCGAAGAGCCGGACGTAGAGAATCTTAAAAATGGTTACATTTa
tgctgtttttgatgattgtTAAAGGTAAAATAGCTTTTGAAGATGTATTT
CATCAATTCTACAACACTTATTAATGCGATCTAATAATCAAGAGGATATT
GGTAATCGGATTCAATGAAACTTTGATTGGCATTATAGAATAAATCAAAC
GTGGTCGAATTAAGATTCAATCAACCTGACATGGTTGAAAATTCGATTGG
TATTCGAGCAATATCAATAATCCATCGGACAAGAGGATTCCCTTACAAAA
ATCTAAGGGGTGCCTTTCCTTGGgactatttttttccaaaactgaTTATA
AACCTATCTAGTGTCACTGTTTTCTTAAATGAgtttttaaaaagtgtttt
tttgatATTTGCTTTCAGTTGgtgtattttgcagaccagCAATCAACAAG
AGAAATTTCACAAGTGCATTTGATCAAATACAATGGAACAATGAACACAT
CTTAAATTCTGAAGGTGCGTCTTTTCCTGATGGTTGAAAATCAACATGAA
AAGCAAACGAACACAAAATTTGACCCCTGTTATCAGACAATGcgattttt
ttatttacctttATAGCGTATTGATTTTGGCGGAGATTAAATTTGGtgaa
tttggcggattttgctAAAATACACCAAATTAAATCCCAGCTAAATTATA
CAAATTCtgctatccgccaaattaaatacccaCCAAAAATCACATTTTGG
CCAACCAACAAATTAAGTACACaccaaaattaatacacttaagATAATCT
AATCGAGTGGACTGTTTATTTCTACGTTGAATTACTGGAAATTACTTGAA
TTACTTTGGAAGGCAGCTAAAGTTGGACTATTCTCCTTGGAAATACCTTC
CCAACGGTGTATAGATTAATACATTAATAGGTGTCCTTTGTCTTATAGAT
TCTGAAGACCTTTTCGAAGATGATATTGTCAAGTCTCCCGCAATCGATGA
AATTATCAATCGCAAAATAACGTCACCAGGACGACAACGACGTGACGTCA
TCACTGGACCATATGCATGGCCAAATGGGAAGGTTCCTTACGTATTTGCT
GATGATTATCGTAAGTTTTGGTGTCGAGTTCAGACTTCATTATTTTTATC
TCTTCCAGCCGAATTAGACGTGAATTCAAGAAActtaattaaaagtttat
taaAGTTCTATGGTGAATTGAAGCTTTTTATGGCATTGGTTATGaataac
aaaataagaacatacagtatgtggcccccaaaacggcgatcaaatttgaa
gtttctctcaaatctagaggaaaagagattttacaaacatttttgctgca
tgaaaacctttaacatctctactttatttcctggaagttctttttcaaaa
ttttcaatttaacaatatttttcaatcgcttaaagataggtagctttttt
ctaatggcccccaaaacggaggtttgaaattttagcgatttctcgagata
tctttaagatatgaatacaaaattttgaccatagttttgaaatatgattt
agagggttttgggcataaatttatttgataaaatttttacagtgNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNttatgaaatatttcaagatttttgatattgcaaagtccaaact
gaaaatttagaaattttcaaaatgacaattttgatttaacaacgtcttaa
tcaagtttttgagaacaaatctcttttgaaaatagttccatttatgtatg
gaataagctgtgaaaattttagaaaaaaagcttaactcaaactgaaaata
ttaagctttaaagatatttttctcctatattttgcaNaaacatgctcatt
tttaagtatacccatcattctttcaaaataaacaaaaatcgtttaattct
gataaatctacaagtcagaatcttcatttcaatgaaatcctccgttttgg
gggccgtctccgttttgggggccgtatACTGTAAGGAACCGTATTCACCA
CTTCTACCACTTTTGGGGTCGAGTTTATACTTTAATACTATTTACAAGAT
AGGATTTCATATCAAGTTTTCCGGTTTCTTCCAGGATTCAGGCGATCCAA
GTATCTTTCTTGCGCTCGATTCCCTGAGAAACTTTCCAGAGGATATTCAT
TTTTCTGACACTCATTATTCATTCTATTCAGCCGAGTTCAGTAAATTTTG
GGTGAGATCGTCCATGgatgaaattcaaaaagtcagtTGTGTTCAATTTA
TTGAAAGAACTGACGAGAAAGATTACATCAAAATCGTCAACGGTACACAG
TAAGTAAACACACAGTCTGATTTAATTGATGAATTTTGATAGCCCAAATG
AgatcagtgaaatattttttattatNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccaaaa
tactggttgaccttcaagatgctatatcttttacccagcctctaaagtca
cagatgtatttgcattttctgaacggcattaggtgtagcaAGTTttctat
accccgttttcataacttattttcaatatccaaggagctagagtgagtta
tatgcaattttaatctaattttggtgctaaaatatttcctttagacgcaa
atattNattttttgtcacttttattttgttgctattaaagagaGACAATA
AAAGAGTTCAATTGTGAATTTCGTGAACAATTGAATGACTTTAAATCAAT
AGGTTtacgttggttattggatttattaaccctcggtgataaatattcaa
ctcggcttcgcctcgttgaatattacatcacctcgggttaataaatctca
ataaccaacttttacctactgaatatctgcttattatgtCGTCACACCCC
GTCACACGTTCATCTATGTCTCAGTCAAAGTTTAGggtcttttgaaagaa
aagtagactggagtcgtttataaatTATAATCCGTCTAACACATTAATAT
GGGTAACTATAATAATACGATCATTGTAACGGGATAATAccagatacctt
atcggccctaaTTTATACCTTCCATtattttttgcctatttttcaaTTTG
TCCGAGTTAGTCGTCTAAAATACTGGATTAAAAGAAaagcaaatattttt
taaaataaaaccgATAAAACAATGTCTTTTTCTCCAGGTGTTATTCATCC
ATTGGTCGACGTGGCTCGAACCAGACGTTATCTCTCGGAGACAATTGTCT
TTCAGATTCGATTATTCAACACGAATTATTGCACGCCCTTGGTTTCTTTC
ATGAACAATCGAGACTAGAAAGAGATTATTTTGTTACCGTGCACTGGGAT
AATATTATCAAAGGTGAGAATGAGAATGTCAGGTTTGGAAAAAGTAATGT
GTAAGGTATGAGCAAGCTTCCCATTGAACTTTCCATACAATTGATTTACA
ACGCGCTTCTTCAAAACAACACCCTTTCTCAATCAAGTGAACAAAAGTTC
GCAGAATTCCAATGAGTCAAACGGAGCAAATAAACGCAGTTTGTATACTT
TAAGGTCCCAAATAGGGTccgaaatcttttcaaaatctaataaaCGAGGA
GGTCGGAAATAGTTTCtctaaacccccccccctccaaaaaaaaaaaaaaa
aaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaaaaaaaaaaa
aggtaattattATAAGCTCAAACCAGGTTTTTTAGAGCAATTCAGCTTGT
GATagatgaaattattttcaaaaataaataaacagggGGGAGACGTTTCT
TCGGGACCTTAAAGTGGTTATAATTTCAAGTCTCACTGGATCCGTTAATT
TTCTGAGGaatctggtggctggtcagcaAGCAATCCCAGGATTACTTTAT
TCcgtttattgcaatatgcaacAAGCAAGAGTTCATGATTCTGATGGTTT
CAAGAATTGTATACTTTGATTTTTTAGGAAAAGAACACAATTTCGAGAAG
TATGGGTTGGGTGAAGCATCACATTTAGATGAACACTACGACACAAAATC
TCTCATGCATTACTCGAAGTAAGATAAACTAACGGAAAATTGCCAAATTA
TTCTATTTTTACCAAATTATTGGAATACCTTTGTATGACTTATAATCATG
ACCGAAAGTGAAACTATCAGAATCATTGAATATTGTCTTGACTTCATTGA
CATCATTTATTGACGAgtaaagaataaagaaaaagtcaaacaaAGACATA
ACTGATCTCTTTCTAATAAACCTAGGAGGTGTGGTTCTGtggttaaattt
caaaaaatatgggAATTCTTTTTCAGTTACATCTTCGCGGTCAACGAAAG
CAAAATGACGATCTCATCGAAATCCAACGCCTCAGAATCTCTCGGAGGAT
TTGAAATGACCGACACGGACGTTCGACAATTGAACAAATTTTACAGCTGT
CCATGTGCAGATCATATGTTCGGCTGTGAGTTTATTACAAGCATGTGTGG
ACAGTTTAGGACTCAACAGTATTGTCAGAAAAGTTGTGGCTTCTGCCACA
CTAGCGAGAATCCTCCAATGTCTTCAACGGTTTCCTCTTTAACCACAACC
ATGTCAAATAATACAACAACGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039094XLOC_039094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062391-exon-scaffold_364-1491911889:312915..313238TCONS_00062391-exon-scaffold_364-1491911889:312915..313238Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1510915933:312915..313238TCONS_00062391-exon-scaffold_364-1510915933:312915..313238Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1575043694:312915..313238TCONS_00062391-exon-scaffold_364-1575043694:312915..313238Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1491911889:313583..313678TCONS_00062391-exon-scaffold_364-1491911889:313583..313678Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1510915933:313583..313678TCONS_00062391-exon-scaffold_364-1510915933:313583..313678Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1575043694:313583..313678TCONS_00062391-exon-scaffold_364-1575043694:313583..313678Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1491911889:314113..314274TCONS_00062391-exon-scaffold_364-1491911889:314113..314274Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1510915933:314113..314274TCONS_00062391-exon-scaffold_364-1510915933:314113..314274Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1575043694:314113..314274TCONS_00062391-exon-scaffold_364-1575043694:314113..314274Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1491911889:315646..315763TCONS_00062391-exon-scaffold_364-1491911889:315646..315763Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1510915933:315646..315763TCONS_00062391-exon-scaffold_364-1510915933:315646..315763Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1575043694:315646..315763TCONS_00062391-exon-scaffold_364-1575043694:315646..315763Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1491911889:317002..317177TCONS_00062391-exon-scaffold_364-1491911889:317002..317177Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1510915933:317002..317177TCONS_00062391-exon-scaffold_364-1510915933:317002..317177Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1575043694:317002..317177TCONS_00062391-exon-scaffold_364-1575043694:317002..317177Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1491911889:318342..318432TCONS_00062391-exon-scaffold_364-1491911889:318342..318432Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1510915933:318342..318432TCONS_00062391-exon-scaffold_364-1510915933:318342..318432Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1575043694:318342..318432TCONS_00062391-exon-scaffold_364-1575043694:318342..318432Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1491911889:318691..318988TCONS_00062391-exon-scaffold_364-1491911889:318691..318988Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1510915933:318691..318988TCONS_00062391-exon-scaffold_364-1510915933:318691..318988Clytia hemisphaericaexon
TCONS_00062391-exon-scaffold_364-1575043694:318691..318988TCONS_00062391-exon-scaffold_364-1575043694:318691..318988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:312915..318988 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0840363	0.0604805	0.0380395	0	0	0	0	0.11885	0	0	0.0340376	0	4.08813	4.84181	0.898357	0.967419	0.0930137	1.21783	0.107141	0	0	0	0	0.0471194	0.224296	0	0	0.127443	0	0.153336
Blast
[Close]
BLAST of TCONS_00062391 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.073e-36
Identity = 87/247 (35.22%), Postives = 134/247 (54.25%), Query Frame = 3 
Query:  429 DLFEDDIVKSPAIDEIINRKITSPGRQRRDVITGPYAWPNGKVPYVFADDYPEFSKFWVRSSMDEIQKVSCVQFIERTDEKDYIKIVNGTQCYSSIG-RRGSNQTLSLGDNCLSDSIIQHELLHALGFFHEQSRLERDYFVTVHWDNIIKGKEHNFEKYGLGEASHLDEHYDTKSLMHYSNYIFAVNESKMTISSKSNASESLGGFEM--TDTDVRQLNKFYSCPCA-DHMFGCEF-ITSMCGQFRT 1154
            DLFE DI    A             + R  +I   Y WP+  +PYV  D     +K  + ++ +  +  +C+ F     E +YI +  G+ C+SS+G RR   Q LS+G NC   + +QHE LHALGF+HEQSR +RD +V + WD I+ G+EHNF  Y    +  L+  YD  S+MHYS   F  N ++ TI ++ +  E + G  M  +D+D+ +LN+ Y+C  +   M  C F + ++CG  ++
Sbjct:   47 DLFEGDIRLDRA-------------QIRNSIIGEKYRWPH-TIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQ-NGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELENVCGMIQS 278
The following BLAST results are available for this feature:
BLAST of TCONS_00062391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B1.073e-3635.22Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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