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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062390 ID=TCONS_00062390|Name=TCONS_00062390|organism=Clytia hemisphaerica|type=transcript|length=859bp
NNGATTTATTGAAAAATGCTGTGGACGTGGACTGGGCACTAGTGGGTTTA
GTTTGTCAAATCTTGTGGAATTACACGGAAGATATGAATTCAACGCACGA
ATATTTTGATGATATTGATGCGGAGGATTTGATAACCACCCTCACCGACT
TCACAGACCCATCGATCATTGCAACAATGTTGCACCCACAATCCTCCACT
AATGAAACAGAAACACGTGAAGAAGTCGACGAAGAATACGAAGAACACTT
TAAAGAGAGCTGGGGCGAGTTTCTTCCCATTGGACAATCACTATTACAAC
GAATGGAACAGTGTCATTCACATCTTGAACCGCTGGTCACGCCACCTGAT
TAAAAACACGCACGCACTCCGTAAGATTTTTGTACATGTTTTTATGGACA
CACAAACTCCATTATTCTGGATGACAAGCTGTGGTAGATGACCAGATAGA
AAGATCTTTATCAAAGCTTTAGATCGCAATATAGCGTGTATCCTTGATAA
ATTGATTGGTGTTACAAAGGGTTGTAGTCCGGACTTTCAGAGACACCAAA
TATTTGTCCATATATATATTGATTATTGAACATTGCCTTGATACACCTTT
TTAACGGCTTCCATGTATTGGTCCACTCCATAAATTGTTGGAGAGCCTTT
AAACATGAAATTCTCAAATTGAAAGTGTCTTAAGTTTTTCAGCCCTACAT
GCTTGTGCCCATTTTTTAACTGCTTAGTTAGGTAATTAATGTACAGAAAA
TCGACTTCTTTTTATGTATTTATAATGTGTTTATAAAATATTAGTTCAAT
ACAAATTTAATATAAATCTTTCACCAAAAAAAATCCGGAATTTTCTGTTT
ACCTGTCAA Run BLAST on NCBI protein sequence of TCONS_00062390-protein >TCONS_00062390-protein ID=TCONS_00062390-protein|Name=TCONS_00062390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
DLLKNAVDVDWALVGLVCQILWNYTEDMNSTHEYFDDIDAEDLITTLTDF
TDPSIIATMLHPQSSTNETETREEVDEEYEEHFKESWGEFLPIGQSLLQR
MEQCHSHLEPLVTPPD Run BLAST on NCBI transcript from alignment at scaffold_364:277456..278585+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062390 ID=TCONS_00062390|Name=TCONS_00062390|organism=Clytia hemisphaerica|type=transcript|length=1130bp|location=Sequence derived from alignment at scaffold_364:277456..278585+ (Clytia hemisphaerica)
NNGATTTATTGAAAAATGCTGTGGACGTGGACTGGGCACTAGTGGGTTTA
GTTTGTCAAATCTTGTGGAATTACACGGAAGATATGAATTCAACGCACGA
ATATTTTGATGATATTGATGCGGAGGATTTGATAACCACCCTCACCGACT
TCACAGgttcgtttttataagaactattgAAGCCTTCTTTGGGTTTTTAT
CCTaatgaattgtttttttataatctgCAAAGCTTTAGAACGTGCTTAAA
CTTTTGGTTTCAGATatcaaaatgaagatcatagcacaatcctacaagaa
gttgattttcttcttcttcattttttatcttcatttttttgataatattc
cactcgtGATTATACTTTTgtcgctgcagattatattgagacagataTAA
ATATTCGTTTCCTCCTCTTTCCCTCAGACCCATCGATCATTGCAACAATG
TTGCACCCACAATCCTCCACTAATGAAACAGAAACACGTGAAGAAGTCGA
CGAAGAATACGAAGAACACTTTAAAGAGAGCTGGGGCGAGTTTCTTCCCA
TTGGACAATCACTATTACAACGAATGGAACAGTGTCATTCACATCTTGAA
CCGCTGGTCACGCCACCTGATTAAAAACACGCACGCACTCCGTAAGATTT
TTGTACATGTTTTTATGGACACACAAACTCCATTATTCTGGATGACAAGC
TGTGGTAGATGACCAGATAGAAAGATCTTTATCAAAGCTTTAGATCGCAA
TATAGCGTGTATCCTTGATAAATTGATTGGTGTTACAAAGGGTTGTAGTC
CGGACTTTCAGAGACACCAAATATTTGTCCATATATATATTGATTATTGA
ACATTGCCTTGATACACCTTTTTAACGGCTTCCATGTATTGGTCCACTCC
ATAAATTGTTGGAGAGCCTTTAAACATGAAATTCTCAAATTGAAAGTGTC
TTAAGTTTTTCAGCCCTACATGCTTGTGCCCATTTTTTAACTGCTTAGTT
AGGTAATTAATGTACAGAAAATCGACTTCTTTTTATGTATTTATAATGTG
TTTATAAAATATTAGTTCAATACAAATTTAATATAAATCTTTCACCAAAA
AAAATCCGGAATTTTCTGTTTACCTGTCAA Coding sequence (CDS) from alignment at scaffold_364:277456..278585+ >TCONS_00062390 ID=TCONS_00062390|Name=TCONS_00062390|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_364:277456..278585+ (Clytia hemisphaerica)
GATTTATTGAAAAATGCTGTGGACGTGGACTGGGCACTAGTGGGTTTAGT
TTGTCAAATCTTGTGGAATTACACGGAAGATATGAATTCAACGCACGAAT
ATTTTGATGATATTGATGCGGAGGATTTGATAACCACCCTCACCGACTTC
ACAGACCCATCGATCATTGCAACAATGTTGCACCCACAATCCTCCACTAA
TGAAACAGAAACACGTGAAGAAGTCGACGAAGAATACGAAGAACACTTTA
AAGAGAGCTGGGGCGAGTTTCTTCCCATTGGACAATCACTATTACAACGA
ATGGAACAGTGTCATTCACATCTTGAACCGCTGGTCACGCCACCTGATTA
AGATTTATTGAAAAATGCTGTGGACGTGGACTGGGCACTAGTGGGTTTAG
TTTGTCAAATCTTGTGGAATTACACGGAAGATATGAATTCAACGCACGAA
TATTTTGATGATATTGATGCGGAGGATTTGATAACCACCCTCACCGACTT
CACAGACCCATCGATCATTGCAACAATGTTGCACCCACAATCCTCCACTA
ATGAAACAGAAACACGTGAAGAAGTCGACGAAGAATACGAAGAACACTTT
AAAGAGAGCTGGGGCGAGTTTCTTCCCATTGGACAATCACTATTACAACG
AATGGAACAGTGTCATTCACATCTTGAACCGCTGGTCACGCCACCTGATT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062390-exon-scaffold_364-1491911889:277456..277611 | TCONS_00062390-exon-scaffold_364-1491911889:277456..277611 | Clytia hemisphaerica | exon |
| TCONS_00062390-exon-scaffold_364-1510915933:277456..277611 | TCONS_00062390-exon-scaffold_364-1510915933:277456..277611 | Clytia hemisphaerica | exon |
| TCONS_00062390-exon-scaffold_364-1575043694:277456..277611 | TCONS_00062390-exon-scaffold_364-1575043694:277456..277611 | Clytia hemisphaerica | exon |
| TCONS_00062390-exon-scaffold_364-1491911889:277883..278585 | TCONS_00062390-exon-scaffold_364-1491911889:277883..278585 | Clytia hemisphaerica | exon |
| TCONS_00062390-exon-scaffold_364-1510915933:277883..278585 | TCONS_00062390-exon-scaffold_364-1510915933:277883..278585 | Clytia hemisphaerica | exon |
| TCONS_00062390-exon-scaffold_364-1575043694:277883..278585 | TCONS_00062390-exon-scaffold_364-1575043694:277883..278585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:277456..278585 + |
Blast
The following BLAST results are available for this feature:
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