TCONS_00062388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062388
Unique NameTCONS_00062388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062388 ID=TCONS_00062388|Name=TCONS_00062388|organism=Clytia hemisphaerica|type=transcript|length=1831bp
CAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAACGTGtggaa
aaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTTATGGATCA
ATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGGAACTACAA
GGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTAAAGTATTT
CCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATACACTTTGA
AATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTACATTGAAAG
TCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTATTAATCCTG
ACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACCAAACAATT
TAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAATCTAAGCA
AGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGACAACTGAT
TATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATGGGAATTCC
ATATATTTCCCTATATGATCGCCATGGCATTCTCAAAGCAGGAGAATCAA
GGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAG
AAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATATCA
AAATGGAATAAcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATCTGAAG
AAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAGCAGAT
TATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGACCATATCAA
TAAATCTCTGAAAGcaATTGAAAATATACCAGACCCAGAGCTTGTTGTAC
AATTTGGAAATATCTATTCACTAAATGGTTATTTACCCTGGCAGACGAGA
TTATCAGAAATTCTGAATTTAAAAACACACAAGAAGATATGTTACAGTCA
ATACTACAATCTACTTGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAA
AATAATATTAAAAGAAACGAAGAGTTAGTCTATTTTTATTGATTGATGGT
GATCATAAACTGATGTTGCTTGATTCGCAATGTAACCCCAAAACTAGCCT
ctgtaatgaaaataaaattatttttagaacGTGGAGTGCATCAAGCCGAT
TCcgattttgaagaattttgtgTTAAGGTCTTCATTCAATCAAAGTCGTT
TCTCGTTATTGGAACATTTTCGAGCTTTCAGATCCTGAGTTCTTTGCAGG
GAATActcctttttctcaaatattacgaatTTGATTGTAGGTCTGACATT
ATGAAAGGTTCTTTGTGACTAAGCAACATCAGTTAGTACtttttgaattg
caaaaaatgttAAACAATTTCGTTGTCCAATTTATTATTTCAGTAAACCA
GCCTTTAATTTAAGAAACGCAACggcaattttgtaaatattgacTTTATT
ATCATAGTATCGAGATGATCAAACCAAGTTTGTGTGCAAACTAGGATAAT
CACGTTTtggaattattttgaatttttataataGTAGCAGAAAGTTTGGg
atatattttaaaatttaggaaatttgtaaagctttttttCTCCCCTGTTG
AAGTGGGAAAACCCCAttctttctttaaattttgTTCTAGAAAGATGAAT
TAAGAATTTGAACTCTATTACTGTTTCAATATTAATTCGTCTTTTGCTGT
TGAGAAAAGAATGACTACTTCCAGACTATAGccatctctctaattcgaat
gctTCTGtaagtgtctgcccctatatCTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_364:212164..216280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062388 ID=TCONS_00062388|Name=TCONS_00062388|organism=Clytia hemisphaerica|type=transcript|length=4117bp|location=Sequence derived from alignment at scaffold_364:212164..216280+ (Clytia hemisphaerica)
CAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAACGTGtggaa
aaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTTATGGATCA
ATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGGAACTACAA
GGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTAAAGTATTT
CCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATACACTTTGA
AATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTACATTGAAAG
TCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTATTAATCCTG
ACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACCAAACAATT
TAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAATCTAAGCA
AGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGACAACTGAT
TATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATGGGAATTCC
ATATATTTCCCTATATGATCGCCATGGTAAGACTTTCATCAAATTCTAAA
GCTGCCAAAAAGATTGGGGATATGTATACAcattctttttatatatataa
gATTTCTACAACCTTCATTAAAGATGGTAGTAACAGGAAAGTtagaatcg
ctgattgaaacttattttctttgcttagcgatcAGAGAGGAAAATACCTT
TTGTCtacagtgattccgaccttcctatcaTTCTAGGGTGTGTtgaacat
tagaccaacttacggtataagGCTTGGatggccaatttcttaagaaaatg
gacaaaaatgctcacatggtgaaataaaaaaaatataaaaaaaaacgtgt
acagttgGGATAATGCTAGGCAGGGCTTACTACAGGCAGGCCATCTTGAG
ACGTCTGTTTTGTAAgagacaaaaatctaaaatcaaatctgaaacAGGGC
GAGGGGGTTCATTCAGCTGGTACCAGCAGGTAACAGACATCATGAtggtc
agtcaggcacatcctggcaaatgaacggggtatttttcacttgcaattgg
tggcaaatgcaaggggtcgaaaacaaaagtgatgtaatagcactgaatac
cccacgcaattgaaccgggttggaaatattttgcttcatttcaaagaact
gcatggaggaaattttttttccatgggtcaattttgtcttcgaagattga
agaaacttttaacgaaaaaataaagttcccagttttcttccttttttccc
attttcagtttgaagttcatttttattcattttcacgcttttagcgtcct
atctcatttacactgggtgacgaataccccatgcaaatgctcaccccgtt
catttgccaggatgtgcctgactgatgGTTATACTGCCGTGGATATTTGC
AtttgtaattttgctgaaagcTTATTTAAAaggaattttattttgtaaCC
ATGAATTTTCTTTCAGGCATTCTCAAAGCAGGAGAATCAAGGCTTGGAAA
AGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAAAGCACAAG
GAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAAATGGAATA
AGTATGATTTTAATTTAAACCGTTTTTTTGCTgcgcaaattttgaaataa
caaTTTCTTTGAgtcaaaaagttttgtaaagGTGACAAATTGACCTGAAT
TGACACAAATCATAGAAAAAGTGCtatattcaaaaactttctcaaaattA
TCTGACCGGTATTATCAAAATTCTAAGAATCTGATGgagtgttttctttt
ctttcagcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATCTGAAGAAGA
TGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAGCAGATTATG
CAGACAATAATATAGAGGAGAAGAATATAAATATTGACCATATCAATAAA
TCTCTGAAAGGTAGGATTTTAGAAGGTCACTACGTGTTTGAAATGTCTAG
GATATGCTTTGGTTATCTCtgtctttcttttctttggaAGTCACCTGAAT
GATTCGAGAGAGAGacccggggggggcagctgggcaaaaggaccgacggg
tatgtgcgggcactaagggtgtctttttcaaggcacctcaaatgcactgt
aagggtcggaaaaactagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTCTTTCAGGCATTCTCAAAGCAGGAGAATC
AAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGA
AGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATAT
CAAAATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTGCTgcacaa
attttgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaagGTGACAA
ATTGACCTGAATTGACACAAATCATAGAAAAAGTGCTATATACAAAAACT
ACCTCAAAATTATCTGACCGGTATTATCAAAATTCTAAGAATCTGATGga
gtgttttcttttctttcagcaTACCCAAAGAAGTTTTGTGTTCAGTTACT
ATCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAG
CAGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGAC
CATATCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCACTACTATTT
GAAATGTCTAAGGATATGCTTTGGTTATCTCtgtctttcttttctttgga
AGTCACCTGAATAATTCGAGAGAGAGAGGAGGAAAAATGAGGTTTCAAAT
CAgcgttttattttctttttaagcaATTGAAAATATACCAGACCCAGAGC
TTGTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATTTACCCTGG
CAGACGAGATTATCAGAAATTCTGTAAGTAAAAGTGTACGCAGGACCAGG
AGAATCTCACAATACATTGAAATACAAAATGACCTAGTCGAATTAAAAGA
CCTCATTTGGTTTTCTTTAAGGGATAATCATGGGGATTTAATTTTATAAA
ATAGTTGTCCTGATTATTTGGTCGGAAATTGTAGACTTGTGTAGATTTGC
GATAatgtaatattttgattttgatgtttgttGTTTGTCTTGTTTTGTAG
GAATTTAAAAACACACAAGAAGATATGTTACAGTCAATACTACAATCTAC
TTGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAATATTAAAAG
AAACGAAGAGTTAGTCTATTTTTATTGATTGATGGTGATCATAAACTGAT
GTTGCTTGATTCGCAATGTAACCCCAAAACTAGCCTctgtaatgaaaata
aaattatttttagaacGTGGAGTGCATCAAGCCGATTCcgattttgaaga
attttgtgTTAAGGTCTTCATTCAATCAAAGTCGTTTCTCGTTATTGGAA
CATTTTCGAGCTTTCAGATCCTGAGTTCTTTGCAGGGAATActccttttt
ctcaaatattacgaatTTGATTGTAGGTCTGACATTATGAAAGGTTCTTT
GTGACTAAGCAACATCAGTTAGTACtttttgaattgcaaaaaatgttAAA
CAATTTCGTTGTCCAATTTATTATTTCAGTAAACCAGCCTTTAATTTAAG
AAACGCAACggcaattttgtaaatattgacTTTATTATCATAGTATCGAG
ATGATCAAACCAAGTTTGTGTGCAAACTAGGATAATCACGTTTtggaatt
attttgaatttttataataGTAGCAGAAAGTTTGGgatatattttaaaat
ttaggaaatttgtaaagctttttttCTCCCCTGTTGAAGTGGGAAAACCC
CAttctttctttaaattttgTTCTAGAAAGATGAATTAAGAATTTGAACT
CTATTACTGTTTCAATATTAATTCGTCTTTTGCTGTTGAGAAAAGAATGA
CTACTTCCAGACTATAGccatctctctaattcgaatgctTCTGtaagtgt
ctgcccctatatCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039091XLOC_039091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062388-exon-scaffold_364-1491911889:212164..212739TCONS_00062388-exon-scaffold_364-1491911889:212164..212739Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1510915933:212164..212739TCONS_00062388-exon-scaffold_364-1510915933:212164..212739Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1575043694:212164..212739TCONS_00062388-exon-scaffold_364-1575043694:212164..212739Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1491911889:213680..213704TCONS_00062388-exon-scaffold_364-1491911889:213680..213704Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1510915933:213680..213704TCONS_00062388-exon-scaffold_364-1510915933:213680..213704Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1575043694:213680..213704TCONS_00062388-exon-scaffold_364-1575043694:213680..213704Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1491911889:214467..214576TCONS_00062388-exon-scaffold_364-1491911889:214467..214576Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1510915933:214467..214576TCONS_00062388-exon-scaffold_364-1510915933:214467..214576Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1575043694:214467..214576TCONS_00062388-exon-scaffold_364-1575043694:214467..214576Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1491911889:214783..214935TCONS_00062388-exon-scaffold_364-1491911889:214783..214935Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1510915933:214783..214935TCONS_00062388-exon-scaffold_364-1510915933:214783..214935Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1575043694:214783..214935TCONS_00062388-exon-scaffold_364-1575043694:214783..214935Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1491911889:215087..215186TCONS_00062388-exon-scaffold_364-1491911889:215087..215186Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1510915933:215087..215186TCONS_00062388-exon-scaffold_364-1510915933:215087..215186Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1575043694:215087..215186TCONS_00062388-exon-scaffold_364-1575043694:215087..215186Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1491911889:215414..216280TCONS_00062388-exon-scaffold_364-1491911889:215414..216280Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1510915933:215414..216280TCONS_00062388-exon-scaffold_364-1510915933:215414..216280Clytia hemisphaericaexon
TCONS_00062388-exon-scaffold_364-1575043694:215414..216280TCONS_00062388-exon-scaffold_364-1575043694:215414..216280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:212164..216280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.424877	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00062388 vs. Swiss-Prot (Human)
Match: NGBR (Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.146e-32
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 3 
Query:  423 YEQDMGNLSKLPRHMSFVINE-DVTTDYCDIANLIVWTIAMGIPYISLYDRHGILKAGESRL-GKVIKQKVVKTFGQKKAQGIDVVLKDSSYRYQNGITYPKKFC---VQLLSEEDGKADIISTTKRIAADYAXXXXXXXXXXXXXXXXSLKAI---ENIPDPELVVQFGNIYSLNGYLPWQTRLSEILNLKTHKKICYSQYYNLLARFSKCDQRFGK 1052
            +  D  +L KLP HM  VI E +    + DIA+L+VW +A+GI YIS+YD  GI K   SRL  +++KQ       Q++  G+D       +   N        C   V++LS EDGKADI+    R A D+     +++    D    +L ++      PDP+LV++FG + S  G+LPW  RL+EI++L +H  I Y  +++ L +++ C+QR GK
Sbjct:   87 WRADGRSLEKLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQ-------QQELLGLDCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIV----RAAQDFCQLVAQKQKRPTDLDVDTLASLLSSNGCPDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLPSHLNISYEDFFSALRQYAACEQRLGK 293
The following BLAST results are available for this feature:
BLAST of TCONS_00062388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NGBR2.146e-3235.78Dehydrodolichyl diphosphate synthase complex subun... [more]
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