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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062381 ID=TCONS_00062381|Name=TCONS_00062381|organism=Clytia hemisphaerica|type=transcript|length=1729bp
CTTGGTCAGTAGCAACGACAGTATCTCCGCTGGTAACCTCATCTTGTTTC
TTTGCACTCTCACTACGACTGGCCAATAACTCATCTTCGTTCCTCTCGCG
ACTTTCCTCTTGACTTCTGTCCCTATCTCTTCCACGTTCCCGACTCCTTT
CTCGTCTATCCCGACTACGATAACGATCTTCGTCCCGACCACGTCTTTCA
TAACGATCTCGATCGGATTTTCGTTCACTGCTTCGCTCTCTTCTACGATC
ACCGCTTCGATCGCGGTCACTTCTGCGACTTCTTTCATCACGATCACTTC
CCCGACCACGTTCATCGCGATCACGGTCACTACCTCTCTCCCGATCACTA
CCACGATAATCACGCTCCCGCCCGCGGTCATCACGCCGGCTACGACTGCT
GCGCTCAGAGCTGCGATCACGTCTTCCGCGATGGTCACGATCACTATCTC
TACGTTCACGACTTCTCTCACGTCTCCGATCGCCTCTCTCACGGTCACGG
TCATCACGCACGGGTGATCTATCACGAGTAGGAGACCTTTCACGTTCTCT
TTGTGGCGGTGGTTGTGATTCTTCATCTCCAGGTTGCGTCTGGTTATCAG
TTGAGGCTTGTTGTTCCTTGTGTTGGTTCACAAGATTGAGCAAGAAAGCA
GCTGTTGGCAGGTTCGTCAAGTTTCTCTGATTTTGGACATTCTTCTCCAC
TGTTTCCTCGTTTCTACTTGGTTGATTTCCCATGTTACCAACCTGGTCAC
GATTTTGCAACCATGGTGGCCTTTGTCCAGCATCTTGTGCATTGGGAGAT
ATCTGGGATTCTTCAGGAGCAACTGGTCGTATATTGGTGAATCTGTTCTC
AGGCGGACCATTGAAACGTTGGTTTTGACTCAGTAAGTTTTGGATTTGAG
GGCGTTGATTCAAGCCATTGAATAAGAGATTTCCTCCAAATAGATGTCTT
TGAACAGGAGGACGTTCCCCAAATGAAACAGGGGGTCTTATATTATTGAG
TCCTGGACTAATTGGTCCTTCCTGCCGAGGCCTTACATTTTGGAAACTGT
CTCCGCCAAAAGCAGGGGTGAAGCTAGGTCTTTGTGGCGGGCCACCCATT
GGCTGTCCAGGGCGTGGGCGATTCTCATCAAAACCTGGTCTTTGTGGGTG
TTCTCCGAAACCGGGGCGAGGTTGTTGACCCAAGCTTTGTAAAAGTGATT
GTCTGTCACCCATATTTTGAAAAGGCGGTCTTTGGCCTAGCCCTTGAAGA
GGAGGGCGTTCACCCATGTTATTTTGTTGGAGCAGAGGGCGCTCACCGAT
ATTTTGTTGAAAGGGTGGTCTCTCGCCCATATTTTGAAAAGGTGGTctct
cagccatgttttgaaaGGGTGGTCGTTCACCAAGACCTTGAATAGGTGGT
CTTGGCATACCCTGAAGAGGAGGTCTTTCGCCCATTCCTTGCTGAAGACC
AGGTTGAAGGGGAGGTCGTTCTCCTAAGCCTTGAAGTTGAGGCCTCTCAC
CACCAACGAGCCCTTGAATAGATTGACGTTGAAGATTCTGTAGCTGCAAA
ATATTAGGTGGGAGCATACCAGGAAACGGTAGGCGTCCAGAGAGTCCGGC
AGGTGGCATGCCCGGTAATAGACCAGCAGGTGGAAAAAAACCGGGAGGGA
AGCCAGGGATGAACGGTGGAACACCAGCGACAGGGATCACTTGTTGTGGC
TCATCTTTAGAAGGAGTGCTGGGTTCGTC Run BLAST on NCBI transcript from alignment at scaffold_364:191184..192954+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062381 ID=TCONS_00062381|Name=TCONS_00062381|organism=Clytia hemisphaerica|type=transcript|length=1771bp|location=Sequence derived from alignment at scaffold_364:191184..192954+ (Clytia hemisphaerica)
CTTGGTCAGTAGCAACGACAGTATCTCCGCTGGTAACCTCATCTTGTTTC
TTTGCACTCTCACTACGACTGGCCAATAACTCATCTTCGTTCCTCTCGCG
ACTTTCCTCTTGACTTCTGTCCCTATCTCTTCCACGTTCCCGACTCCTTT
CTCGTCTATCCCGACTACGATAACGATCTTCGTCCCGACCACGTCTTTCA
TAACGATCTCGATCGGATTTTCGTTCACTGCTTCGCTCTCTTCTACGATC
ACCGCTTCGATCGCGGTCACTTCTGCGACTTCTTTCATCACGATCACTTC
CCCGACCACGTTCATCGCGATCACGGTCACTACCTCTCTCCCGATCACTA
CCACGATAATCACGCTCCCGCCCGCGGTCATCACGCCGGCTACGACTGCT
GCGCTCAGAGCTGCGATCACGTCTTCCGCGATGGTCACGATCACTATCTC
TACGTTCACGACTTCTCTCACGTCTCCGATCGCCTCTCTCACGGTCACGG
TCATCACGCACGGGTGATCTATCACGAGTAGGAGACCTTTCACGTTCTCT
TTGTGGCGGTGGTTGTGATTCTTCATCTCCAGGTTGCGTCTGGTTATCAG
TTGAGGCTTGTTGTTCCTTGTGTTGGTTCACAAGATTGAGCAAGAAAGCA
GCTGTTGGCAGGTTCGTCAAGTTTCTCTGATTTTGGACATTCTTCTCCAC
TGTTTCCTCGTTTCTACTTGGTTGATTTCCCATGTTACCAACCTGGTCAC
GATTTTGCAACCATGGTGGCCTTTGTCCAGCATCTTGTGCATTGGGAGAT
ATCTGGGATTCTTCAGGAGCAACTGGTCGTATATTGGTGAATCTGTTCTC
AGGCGGACCATTGAAACGTTGGTTTTGACTCAGTAAGTTTTGGATTTGAG
GGCGTTGATTCAAGCCATTGAATAAGAGATTTCCTCCAAATAGATGTCTT
TGAACAGGAGGACGTTCCCCAAATGAAACAGGGGGTCTTATATTATTGAG
TCCTGGACTAATTGGTCCTTCCTGCCGAGGCCTTACATTTTGGAAACTGT
CTCCGCCAAAAGCAGGGGTGAAGCTAGGTCTTTGTGGCGGGCCACCCATT
GGCTGTCCAGGGCGTGGGCGATTCTCATCAAAACCTGGTCTTTGTGGGTG
TTCTCCGAAACCGGGGCGAGGTTGTTGACCCAAGCTTTGTAAAAGTGATT
GTCTGTCACCCATATTTTGAAAAGGCGGTCTTTGGCCTAGCCCTTGAAGA
GGAGGGCGTTCACCCATGTTATTTTGTTGGAGCAGAGGGCGCTCACCGAT
ATTTTGTTGAAAGGGTGGTCTCTCGCCCATATTTTGAAAAGGTGGTctct
cagccatgttttgaaaGGGTGGTCGTTCACCAAGACCTTGAATAGGTGGT
CTTGGCATACCCTGAAGAGGAGGTCTTTCGCCCATTCCTTGCTGAAGACC
AGGTTGAAGGGGAGGTCTTTCGCCCATTCCTTGCTGAAGACCAGGTTGAA
GGGGAGGTCGTTCTCCTAAGCCTTGAAGTTGAGGCCTCTCACCACCAACG
AGCCCTTGAATAGATTGACGTTGAAGATTCTGTAGCTGCAAAATATTAGG
TGGGAGCATACCAGGAAACGGTAGGCGTCCAGAGAGTCCGGCAGGTGGCA
TGCCCGGTAATAGACCAGCAGGTGGAAAAAAACCGGGAGGGAAGCCAGGG
ATGAACGGTGGAACACCAGCGACAGGGATCACTTGTTGTGGCTCATCTTT
AGAAGGAGTGCTGGGTTCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062381-exon-scaffold_364-1491911889:191184..192635 | TCONS_00062381-exon-scaffold_364-1491911889:191184..192635 | Clytia hemisphaerica | exon |
| TCONS_00062381-exon-scaffold_364-1510915933:191184..192635 | TCONS_00062381-exon-scaffold_364-1510915933:191184..192635 | Clytia hemisphaerica | exon |
| TCONS_00062381-exon-scaffold_364-1575043694:191184..192635 | TCONS_00062381-exon-scaffold_364-1575043694:191184..192635 | Clytia hemisphaerica | exon |
| TCONS_00062381-exon-scaffold_364-1491911889:192678..192954 | TCONS_00062381-exon-scaffold_364-1491911889:192678..192954 | Clytia hemisphaerica | exon |
| TCONS_00062381-exon-scaffold_364-1510915933:192678..192954 | TCONS_00062381-exon-scaffold_364-1510915933:192678..192954 | Clytia hemisphaerica | exon |
| TCONS_00062381-exon-scaffold_364-1575043694:192678..192954 | TCONS_00062381-exon-scaffold_364-1575043694:192678..192954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:191184..192954 + |
Blast
The following BLAST results are available for this feature:
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