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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062380 ID=TCONS_00062380|Name=TCONS_00062380|organism=Clytia hemisphaerica|type=transcript|length=777bp
CTTTAGGAACGCTAAGAATAGAAATAGGAAAGAAATATATGTTTTGCATT
AAAAACAAGATTGAATTTACATATTATATATTAATAAAGCTTCAGCCATT
TGTTATAGAGAATTGAAATTCCATTTACATTTTATGAAAAGCCTTCTTTA
GAACATGCGATCGATTTAAAAGAATGTTCTGGCTGCTCAGATTCTCCGTC
TGTCGCTGTTTCCCTTGGTAACGACGGTTTTTGCAAAGACGTCAAATCAC
AATGATGTCCCTTACTTAGTTCCgtaatttgtataattttgaACTTTCGA
GGTTTTTCTAAGGGTGTACGCCGCTCAAAAGAACTCGACGGTTGACTTTT
ACTCGTCAAACGGCAAATGGGACGGCTTTGAGATCTTAATGATGTCATTC
CGGTCACGGCGTTATCACATCGGAGTAAATCATCATCAAACGACAAAGTT
CTTTGTATACTGCGGAAATCTCGTTGGCAAATATTGAGAACCTCAAAATC
ACAACTTTTCGTAAATGCCGATGAATCGTCGTAACAGGTCGTGTCGTCCG
ACGATCGTTTTCGTTTACTCGGTGATCTGATGAGGTCCTCTGCCCTTACA
TCGATccatcacgaacatcacttcACTGGTTGAATTGTTGTCAAAATCAC
TAGAAGAtatttgcttttgttttgataaagaaCATTTGCTACAGCTTCTA
CATCACTAATTAACCATGGCGCTCGGCCTGGGAGTCATTGGCGAGTTTAT
GTAATTGTAATTTTGAGGACGGTGGAT Run BLAST on NCBI transcript from alignment at scaffold_364:182392..187618+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062380 ID=TCONS_00062380|Name=TCONS_00062380|organism=Clytia hemisphaerica|type=transcript|length=5227bp|location=Sequence derived from alignment at scaffold_364:182392..187618+ (Clytia hemisphaerica)
CTTTAGGAACGCTAAGAATAGAAATAGGAAAGAAATATATGTTTTGCATT
AAAAACAAGATTGAATTTACATATTATATATTAATAAAGCTTCAGCCATT
TGTTATAGAGAATTGAAATTCCATTTACATTTTATGAAAAGCCTTCTTTA
GAACATGCGATCGATTTAAAAGAATGTTCTGGCTGCTCAGATTCTCCGTC
TGTCGCTGTTTCCCTTGGTAACGACGGTTTTTGCAAAGACGTCAAATCAC
AATGATGTCCCTTACTTAGTTCCgtaatttgtataattttgaACTTTCGA
GGTTTTTCTAAGGGTGTACGCCGCTCAAAAGAACTCGACGGTTGACTTTT
ACTCGTCAAACGGCAAATGGGACGGCTTTGAGATCTTAATGATGTCATTC
CGGTCACGGCGTTATCACATCGGAGTAAATCATCATCAAACGACAAAGTT
CTTTGTATACTGCGGAAATCTCGTTGGCAAATATTGAGAACCTCAAAATC
ACAACTTTTCGTAAATGCCGATGAATCGTCGTAACAGGTCGTGTCGTCCG
ACGATCGTTTTCGTTTACTCGGTGATCTGATGAGGTTTGTCGGTAAAGAT
TCGCTTACTATCGGTGGCCCAAATGGAGGTCTATTGTTCTTTTCCTCGTA
ATATGAATCGCCTTTCTTTCGTAATTCAGAGTGTTCGTAGTCATCAATGT
CCCGAAAATCTAATGCTGTTGCATATTTCTTTGATGACAAGGAACCGCTG
GAGTCGACAGCCTCCTCCGTAGCTTGGATACCTGCAACGTTTTTCGCTTT
TCCATCGCCAGGGCGTGGCGCAAAGTTTTGATGTAGCCTAGAAGCTGCCT
TCTCCTGGAATGCGTTTGATATGAACAAATAGTCGGTTGATAATGGTAGT
TTTTCCAGTTTTTGTGAAAGAAAACTAATCGGtgaatctaccattttgat
agGGACACGTCTGTGATAtttattgatttgaagtttGACTTCCAACTCTC
CAAGAATAAGCAGTGCAATATATGTAATATTAAAACGTTCATTCATTCAT
ACATTCATTTGATAAACTAACTCTgtaatgtaaaaaaaatattgagatAA
AGTTAGAAGCGTGTTTGATTGATAAGAAAGAATATCATCAAAAAAAGACT
TGTTATGTACTTTTTCTCAGACCAGTGCGAAACACTCGCTTCATGAAAAG
CTTCTATCTAAAAATGTGTAAACACTAAAAATTACTACAACTCTTAAAAG
GATATATTATAGTAGAGGATTATACATAAATATATTCCAACGTAGCATAT
GTTATCACATACAGAGAGtttgaaaaaatagcaaaattatTATATACACA
TAACATTTTCCCTGTTTGTGTTGAAAGCAAAGTTTAGAGTAGAAATTGTA
CACCTTAGCAGTAGTATAAGCCTTTCTCCTCTCTTCTATATGACTACTTG
CTAACTACTACGAGATAGATAGGTTGTCTTGCTGTGAAGAGATCACGATA
TATGCAAATCACATTAAAGCCCTTCTCTTTGGTTTTCTTTATTCGTTAGA
TAGAACAGACTTTTACTTCAACTTTTTACTACAATCATTGATAAATCTTT
CTGTTTTAAAAACCTCCCTATCCCTTCTTTGAACCCCTTTTGTTAGTGTC
ATCTGCAAAATATGATTTCAGATATTATACCACATAGAAGATTTTCTCTT
TAAATTACTATTTTCCATGTCTCTATGTCTCTATAAATTCTTAAAAGTGT
TTTTTCGACATATCTTgctttcatcttcttttttccttttttttcaaaaa
gttNCTATGTCTCTATAAATTCTTAAAAGTGTTTTTTCGACATATCTTgc
tttcatcttcttttttctttttttttcaaaaagttagtttttcaattttg
attcttCAATAGTTGTTCATTCAGACAGAGTGTACTTCTTGCTTCTATAa
ccaatattttattttttgtttgaattttcttatttttctgttTGGTGTTT
GAGTAGGTCGTGAGAGCACTCCTCCGCTGCAAAACTTTCCTGAAGAAAAC
CCTCCATAATTTGTCTCGGTTGAGCGATCTTGCTCTACGACCTGACCAAG
TGATACagcaaaaaatatgttttgttgttttacaCTCAGTCGTTCATGTC
TATTTCACTTGCAGTCAACATGTTTTAAGTGAACAATACGTCATCAATTA
TTCAGAAGTTTGAATTCGAGCCCACTCCCTTTTTTCCATACGCAAGCCCC
TTTAGGTTGCCTGCTATATAAATTGTTGAATCATAATCCAAAAATCCAAT
GAAAGCATAaatcaaaaaaacttgtatcATGATCACTGAAAACaagtcga
aaaaaaattccatcaTACATAGCGAACGAAGGCAATTAAGGTTTTTGTTC
TCCTCTATTCTTTTGTAATGTCATGGTATTTAGTAGTAATTTCCCACTGA
TTACTTCAAGCCCTGAAAGCTGGATTCACAGGGAGGGGTCTAGCTGGTGT
AAACACTTATCTTAACTTTTCAACGGGCGTAAGAAGTGTTTACAATTATT
ACACTCGCCAAAGTACGCCCCTTCCTTAGTTGGGTGTGGTCTCTATAGTT
CTATTTTGTTCGGCGAAACACCTTTGTCTCGCTTTCCTAAAGGGCGTAGG
ATGAATGCAGCCTAGAGATTTCAGATATGTACATCTCGCCCAAGTTTTTG
AGGCCTAGTTTCAGCATCTTCAGAGTTTTTTGGTGTATTTCCCAAGTAGT
TAAATGTCTGCAAATGATGTATATTTTTGCAATGTCTTTGAATGTGTATT
TTCTGCCCAActtgtttttcaaagttttcatttaATCCTCTTCTACATTT
TCGCTCTTTCGTCAAATTTACCCCTGGGCATCAAAATATTTCCCTTTGAG
GGGAAGCCATTTTACTCGAATAATTGGAAACATTGAATGTATGTGATACC
CCTGTGTATCACGCCCCTTGGGACCCCAGCCCCTctggaaaatttggtaa
aaatatcgtccccggtcttttggttggcaaagtttgtttgtttttatcaa
gcgAAGGTTATCTGTTCTGGGACTTCCTCTCACACGCCAAATGAAATGAC
CATTGCATTCGGAGTTCCATTTCTTAGCTTTTTCGCAcatctctttgatt
tttcttctttcgttgatggtgaaATCATCGGTGATGCTTAAATGATATCC
AAGCCACTTCaacttttttaaggcttttagattgctcatatttttttctt
tttctttttcattttgcaaGGTCACCTTTATTGGACGCTTTTTCCTTGGC
CCATTTTCATGTTTGAACCCAATACAATGTTGATGCGTTGGTTTGATGTC
GCGGATGCCGATATCTTTGAGCAGATcctcaatttcctttttgtccTCTT
CTTGATCTTCTTCTCTCGTTTCTTCAATTTGTTCAGCGAGTCCAtgaatt
atgatttttttccttGATTCGATATCTCGTTTTTCTCTCCTAtcctcttc
tttttgttccgCAACAACAGATTTAATATTTTCCTTGTGTGCTTTGGTTA
TACCAGCGTAGGTTTTACGTGACGACtctttcataaaatcttttgtctgt
tgtatgtcttcttttatcattttcctcGTTTTGGCTTCTAAGTCGTTTAT
CTTTTCTGTTAGGATTTTGTCGATGTCGTTGTTGATGACTTTGCGGTTTT
TGAGTTGGTGATGGAGTTTTTTATTTCGTTGTCTTTCTTAGCAATCTCCT
TTTGCATCATATGGTACGTGCTTTCTACGATTTTACTATTTAAGGATCTC
GTCATTCGCATACAATTGTGACATATATATTGATTATTATAAGTGTTAGC
GATTATTTGCAGCTGGTAAAGTGGCAATTATGTGCACTCGTAATGTACCA
TACGTTGACAGCTACGGCATTTGAGTCGATTTTGATCTTCATCATCAATA
CACGCAACAAGGGTGCATGTTACAGTTGTGTTTGCTGCTTCAATTGGTGG
ATCTTGGGTGTTTTGTCGcgatttttgttcatatttagcGAATTTTGATG
ATGCTTCTTTGAGTTTCAACCATTTTAGTGCACTGCAAAACACGTCTTAA
CTAAGTGGGGAactacccttgaatttcagccccactgggaaagtGACTTT
GAtctcatccccactcgaaattcattgtttaaaaattgcattccaaaacc
attcccacttgattttttggacctacctcggaggtcctttaaaatGTTCG
TTAagatgttcgttcgttcgtccgttcgcttttctcgggattggctcatt
agattttttctgattttttgcgcaCAAGGATGCAAAATGATGccaaaaaa
gtgacggagcccatttcgaaaaaaattctttccggccgaaaatgccggaa
aaactggtttattgatattttctcgagatttctaCATTAGTTTTCcccaa
ttttttgcacaaagttgcgtattagcaatgcccaaaatgtggcTAAGTcg
aatttttgagaatttttttttccggccgaaaaatGACGGAAATATTATAT
TCGGAAATATTATATTATTTCTTTGCTTTTTACACAAAATCATCATTGAT
AACAATTCCCACCATCAAGCCAgatttaattgtcaataaacaCTGATTTT
TGCacccggaactttctaaaaatcgccggaacagccgaaaatcgcggttt
ctcgagctgtactttatataatatttatatactttttgcaactggaactt
tctatttcttttttccctactccccttccctctccctcCATCCACAATCA
ATGAagaaatttaatgcgttatgcattttcgctaaacgctatattttttg
actgattgttttcatttttctccttattgcatggtaggtccattcagcat
ctagcttgttaaacttggaacaatagaatcttTTAtacccactgaggaaa
aaagttttacAGAGGCTGTGAGACAGTGGTGTAATGTATTGGTGATGTTC
GAATATACTAATAACTCTTCTACTTTATTTTCAGGTCCTCTGCCCTTACA
TCGATccatcacgaacatcacttcACTGGTTGAATTGTTGTCAAAATCAC
TAGAAGAtatttgcttttgttttgataaagaaCATTTGCTACAGCTTCTA
CATCACTAATTAACCATGGCGCTCGGCCTGGGAGTCATTGGCGAGTTTAT
GTAATTGTAATTTTGAGGACGGTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062380-exon-scaffold_364-1491911889:182392..182975 | TCONS_00062380-exon-scaffold_364-1491911889:182392..182975 | Clytia hemisphaerica | exon |
| TCONS_00062380-exon-scaffold_364-1510915933:182392..182975 | TCONS_00062380-exon-scaffold_364-1510915933:182392..182975 | Clytia hemisphaerica | exon |
| TCONS_00062380-exon-scaffold_364-1575043694:182392..182975 | TCONS_00062380-exon-scaffold_364-1575043694:182392..182975 | Clytia hemisphaerica | exon |
| TCONS_00062380-exon-scaffold_364-1491911889:187426..187618 | TCONS_00062380-exon-scaffold_364-1491911889:187426..187618 | Clytia hemisphaerica | exon |
| TCONS_00062380-exon-scaffold_364-1510915933:187426..187618 | TCONS_00062380-exon-scaffold_364-1510915933:187426..187618 | Clytia hemisphaerica | exon |
| TCONS_00062380-exon-scaffold_364-1575043694:187426..187618 | TCONS_00062380-exon-scaffold_364-1575043694:187426..187618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:182392..187618 + |
Blast
The following BLAST results are available for this feature:
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