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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062363 ID=TCONS_00062363|Name=TCONS_00062363|organism=Clytia hemisphaerica|type=transcript|length=3589bp
ATCCTTCCTAGGTAGCATCACCGAGTCCTTATGACTAGATGGCGTACCTC
ACGGACAATGGGAAAATAATAAATTCATCGAACAAAAGCCATCCCCACAG
CCAACAGTAAATATCTCTATTTCACTCAACTCATCTGCACATCAGAAACT
TTGTAAATCGTTTTCTTTGAATAAACTTCAACCTACCAAAGTTAGCGCCA
TCGCTGATACTGGCGCTCAAACATGTACAGCGGGAATAGAACTGCTTTCG
CAATTAAATTATAGTAAAAACGCTTTGATAAAAGCTCGACATCGTCTCCG
CGCTGTGAATAATAACGACATCAGTATTAAAGGCGCAATCATTGCTGACA
TCACCGTCGGCACATCGACCACCACAGAAATTGTTTACTTATGTGACAAA
GTTAAAGgattttttctatcaaaaacaGCACTGAAAAACTTGAACATCGT
ACACTCTACTTTCCCGGAGCAGATTGTAACCAGCCAATTGAATGCAACAG
ACTCACCAGACGACTCCGTTGCCGAGTGCGGATGCTCACGTCGTTCACCA
TGTCCACCCATACCTGACACGATTCCGTTCCCAGCGACACCAGAGTATAC
AGAACAATTAGAGGTTTGGATAAAAACGTACTTTTCGAGTAGTGCATTTA
ACACTTGCAAACATCAAAAGCTACAAGTGATGACAGGCGAACCGCTAAAA
ATCCAATTTCGTGAGGACGAAAATCCCGTTTCCGTTCATAAACCGATACC
AGTACCACATCACTGGAAAGAATCCGTCAAAGGCCAACTCGATCAAGATG
TAAACTTGGGGATAGTCGAACCAATCCCCACTGGGACACCTACAAACTGG
TGTTCTCGGATGATTACCGTTCCCAAGAAAGACGGCACACCCCGCCGAAC
AGTAGATTTGCAAAATTTAAACGCATCTACCAAACGAGAAACTCATTACA
GCCAATCACCCTTCAACATCGTAAGCGTAGTTCCACCGCAAACCAAAAAG
ACAACCCTCGACGCCTGGAACGGATACCACAGCGTTCCATTAGCCAACGA
CGCAAAGGAAGCAACGACATTCATCACCGAATGGGGCAGATACCGCTACC
TCCGTGCACCACAAGGATTCCATGGATCTGGAGACGGGTATACGAAACGC
TTTGACGATATAACAAATGACTTTCCCCGTGTCCAACGTTGTGTAGACGA
CTCGATCCTTTGGGACTCTGACATCGCAACAGCATTTTGGCACACAATGA
ACTACATTAAACTATGTGCCGACAACGGGATAGTGTTTAATCCCGAGAAA
TTTCAATTCGCGAAAGACACCGTTGAATTCGCTGGTTTTGTTATCACACC
ACACGGTTACAAACCAAACCAAAAGATCTTAGAAGGCATTAAAAACTTTC
CATCGCCAACCAACATCACCGGTGTTCGATCATGGTTCGGCTTAGTAAAC
CAAGTTTCCTACGCCTTCGCACAGGCACCCGTCATGACTCCGTTCAGAGA
ACTCTTGAAACATGATGGAAAATTCTATTGGGATGAGACGTTAGAGCGCG
TATTTCAAGAATCGAAACAAAAGATCCTCGACAGCATCGATGAAGGCGTT
CGCTCTTTCGAGATAAACCGACAAACCTGCATCACAACCGATTGGAGCAA
GACTGGTATCGGCTTCACCCTTCTCCAAAAACATTGTTCGTGTCCTTCAA
TTAAGCCAACGTGCGGAGAAAACCACTGGAAAACATGCTACGCTGGTTCT
CGCTTCACATCCCCCGCAGAGAGCGGATACGCACCCAGTCGAAGGCGAAG
CACTCGCTTTACTGTTCGCCTTACAATCCTGCCGAATGTTTGTAATGGGA
TGCCCTAACCTTATTATCGCCGTCGACCACGAGTCTCTGGTACCAATATT
TAACAAAAGAGAATTGTTCGAGCTAAAAAACCCAAGACTGTTAGACATCA
GAGAAAAGACTCTAATGTATAACTTCCAAGTAATCCACATCCCGGGCAAG
AAAAACGTAGGTGCAAACTTCATGTCCCGGATACCGCTTTCACCACCGTC
AAACACCTCTGATAAGATCGAGGCTGCTATCTCGGCTTCTATCCACCTCC
GTTTCAACCAAAGCAACTCGTGTTCCCTTGAGGACATCTCACGCAAAGCC
TCTGAAGACCCCGAGTACATAGATCTCCACCGTACAATTCTCGAGGGGTT
TCCAACCAACAAGGAAACTTTACCACAACACATCTTACCCTActggaaat
tgaaaaatgacttATATTGTGTAGACAATCTAATTATGCTTGACGATCGC
GTCCTGATACCACGCGCTCTTCGACGTACCCTACTAGAAGAGTTACACAT
CGGACACCAAGGCGTCAGCGCAATGAGAGAAAACGCAAAGAGACGATTCT
TTTGGCCACAAATGAGCTCACACATACAAAATCACAGGAATCAATGCACC
CGATGCAACCAAATCGCACCCTCAAATCGCAAAGATACACCGGAAGTCCC
CGATCCGCCGATTTATCCATTCCAACAGACTGTTGCTGACCTCTTTCACA
TGGCAGGACGCCTGTATATCGTTTATGCAGATCGCTTCTCCGGTTGGCCA
GAGGTCGCCTCAACCAAACCTGATGCTACAGCTACCACGGTTATTAACAT
TCTCCGAAGATATTTCACGAATTTTGGCGTCCCCGAAGAACTGTCATCAG
ACGGGGGTCCGCCATTCACATCTCACGAGTTCGAAAACTTTCTAAGATCT
TGGAACGTTTCACATCGAATATCATCTGTCGGCTACCCCCAAAGCAACGG
ACGAGCAGAAGCTGCAGTTAAGACTGTTAAACGGATATTAACGACCAATA
TTAGTCAATCTGGGTCACTGGACACCGATAATGTCGCCAAAGCCCTTCTC
CTGTACCGAAACACTCCATCACCAGACATGGGAGTCTCACCTTCTGAGCT
CCTATTTGGACGCAACATCAGAGACCATCTTCCAGCACCAAGACGTTTCC
GGAAAGAATGGATTGACCTAGCTGATATTCGCGAGAACACTTTTACTAGA
AGGCACCAACAAGCTTGCACGAAATCACAACGACACCTCCCTGATTTGAA
AGTTGGAGACACTGTTTCCATTCAGAACCAAACTGGTAACACTCCGCTTC
GATGGGAAAAGACCGGGGTAATCAGCGAAAGTTTACCCCATCGACAATAT
CGTGTTGTAGTCGATGGTAGCCGCCGTACGACACTACGTAATAGACAGTT
TTTACGCCCAATACCAAACGAAACACGCAACGATATCATCGATTTAGACA
TTCTACGACAAACAAAAGAAGAACATCTTCCCAAAACTAACGGGACAGAT
CTACCAGCACTCAATCAACCAGAAACAATTCCAACTGAACAAGAGACAAC
TCAGGCAGACACTTCACCCTCAATCGTCTGCCCTCCGACACCCGTCATCC
AAACAAGACGATCAACACGCACTAGAAGACCACCAGAGAGATTTAAAGAC
TACGTTATGAAATAGACATTTACACACGAAATTACTCGTGTCCATCATTT
AGTATatttagtttttgtttaaaaaaaaaaaaaaaaaaa Run BLAST on NCBI protein sequence of TCONS_00062363-protein >TCONS_00062363-protein ID=TCONS_00062363-protein|Name=TCONS_00062363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp
MFVMGCPNLIIAVDHESLVPIFNKRELFELKNPRLLDIREKTLMYNFQVI
HIPGKKNVGANFMSRIPLSPPSNTSDKIEAAISASIHLRFNQSNSCSLED
ISRKASEDPEYIDLHRTILEGFPTNKETLPQHILPYWKLKNDLYCVDNLI
MLDDRVLIPRALRRTLLEELHIGHQGVSAMRENAKRRFFWPQMSSHIQNH
RNQCTRCNQIAPSNRKDTPEVPDPPIYPFQQTVADLFHMAGRLYIVYADR
FSGWPEVASTKPDATATTVINILRRYFTNFGVPEELSSDGGPPFTSHEFE
NFLRSWNVSHRISSVGYPQSNGRAEAAVKTVKRILTTNISQSGSLDTDNV
AKALLLYRNTPSPDMGVSPSELLFGRNIRDHLPAPRRFRKEWIDLADIRE
NTFTRRHQQACTKSQRHLPDLKVGDTVSIQNQTGNTPLRWEKTGVISESL
PHRQYRVVVDGSRRTTLRNRQFLRPIPNETRNDIIDLDILRQTKEEHLPK
TNGTDLPALNQPETIPTEQETTQADTSPSIVCPPTPVIQTRRSTRTRRPP
ERFKDYVMK Run BLAST on NCBI transcript from alignment at scaffold_363:109649..113237 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062363 ID=TCONS_00062363|Name=TCONS_00062363|organism=Clytia hemisphaerica|type=transcript|length=3589bp|location=Sequence derived from alignment at scaffold_363:109649..113237 (Clytia hemisphaerica)
tttttttttttttttttttaaacaaaaactaaatATACTAAATGATGGAC
ACGAGTAATTTCGTGTGTAAATGTCTATTTCATAACGTAGTCTTTAAATC
TCTCTGGTGGTCTTCTAGTGCGTGTTGATCGTCTTGTTTGGATGACGGGT
GTCGGAGGGCAGACGATTGAGGGTGAAGTGTCTGCCTGAGTTGTCTCTTG
TTCAGTTGGAATTGTTTCTGGTTGATTGAGTGCTGGTAGATCTGTCCCGT
TAGTTTTGGGAAGATGTTCTTCTTTTGTTTGTCGTAGAATGTCTAAATCG
ATGATATCGTTGCGTGTTTCGTTTGGTATTGGGCGTAAAAACTGTCTATT
ACGTAGTGTCGTACGGCGGCTACCATCGACTACAACACGATATTGTCGAT
GGGGTAAACTTTCGCTGATTACCCCGGTCTTTTCCCATCGAAGCGGAGTG
TTACCAGTTTGGTTCTGAATGGAAACAGTGTCTCCAACTTTCAAATCAGG
GAGGTGTCGTTGTGATTTCGTGCAAGCTTGTTGGTGCCTTCTAGTAAAAG
TGTTCTCGCGAATATCAGCTAGGTCAATCCATTCTTTCCGGAAACGTCTT
GGTGCTGGAAGATGGTCTCTGATGTTGCGTCCAAATAGGAGCTCAGAAGG
TGAGACTCCCATGTCTGGTGATGGAGTGTTTCGGTACAGGAGAAGGGCTT
TGGCGACATTATCGGTGTCCAGTGACCCAGATTGACTAATATTGGTCGTT
AATATCCGTTTAACAGTCTTAACTGCAGCTTCTGCTCGTCCGTTGCTTTG
GGGGTAGCCGACAGATGATATTCGATGTGAAACGTTCCAAGATCTTAGAA
AGTTTTCGAACTCGTGAGATGTGAATGGCGGACCCCCGTCTGATGACAGT
TCTTCGGGGACGCCAAAATTCGTGAAATATCTTCGGAGAATGTTAATAAC
CGTGGTAGCTGTAGCATCAGGTTTGGTTGAGGCGACCTCTGGCCAACCGG
AGAAGCGATCTGCATAAACGATATACAGGCGTCCTGCCATGTGAAAGAGG
TCAGCAACAGTCTGTTGGAATGGATAAATCGGCGGATCGGGGACTTCCGG
TGTATCTTTGCGATTTGAGGGTGCGATTTGGTTGCATCGGGTGCATTGAT
TCCTGTGATTTTGTATGTGTGAGCTCATTTGTGGCCAAAAGAATCGTCTC
TTTGCGTTTTCTCTCATTGCGCTGACGCCTTGGTGTCCGATGTGTAACTC
TTCTAGTAGGGTACGTCGAAGAGCGCGTGGTATCAGGACGCGATCGTCAA
GCATAATTAGATTGTCTACACAATATaagtcatttttcaatttccagTAG
GGTAAGATGTGTTGTGGTAAAGTTTCCTTGTTGGTTGGAAACCCCTCGAG
AATTGTACGGTGGAGATCTATGTACTCGGGGTCTTCAGAGGCTTTGCGTG
AGATGTCCTCAAGGGAACACGAGTTGCTTTGGTTGAAACGGAGGTGGATA
GAAGCCGAGATAGCAGCCTCGATCTTATCAGAGGTGTTTGACGGTGGTGA
AAGCGGTATCCGGGACATGAAGTTTGCACCTACGTTTTTCTTGCCCGGGA
TGTGGATTACTTGGAAGTTATACATTAGAGTCTTTTCTCTGATGTCTAAC
AGTCTTGGGTTTTTTAGCTCGAACAATTCTCTTTTGTTAAATATTGGTAC
CAGAGACTCGTGGTCGACGGCGATAATAAGGTTAGGGCATCCCATTACAA
ACATTCGGCAGGATTGTAAGGCGAACAGTAAAGCGAGTGCTTCGCCTTCG
ACTGGGTGCGTATCCGCTCTCTGCGGGGGATGTGAAGCGAGAACCAGCGT
AGCATGTTTTCCAGTGGTTTTCTCCGCACGTTGGCTTAATTGAAGGACAC
GAACAATGTTTTTGGAGAAGGGTGAAGCCGATACCAGTCTTGCTCCAATC
GGTTGTGATGCAGGTTTGTCGGTTTATCTCGAAAGAGCGAACGCCTTCAT
CGATGCTGTCGAGGATCTTTTGTTTCGATTCTTGAAATACGCGCTCTAAC
GTCTCATCCCAATAGAATTTTCCATCATGTTTCAAGAGTTCTCTGAACGG
AGTCATGACGGGTGCCTGTGCGAAGGCGTAGGAAACTTGGTTTACTAAGC
CGAACCATGATCGAACACCGGTGATGTTGGTTGGCGATGGAAAGTTTTTA
ATGCCTTCTAAGATCTTTTGGTTTGGTTTGTAACCGTGTGGTGTGATAAC
AAAACCAGCGAATTCAACGGTGTCTTTCGCGAATTGAAATTTCTCGGGAT
TAAACACTATCCCGTTGTCGGCACATAGTTTAATGTAGTTCATTGTGTGC
CAAAATGCTGTTGCGATGTCAGAGTCCCAAAGGATCGAGTCGTCTACACA
ACGTTGGACACGGGGAAAGTCATTTGTTATATCGTCAAAGCGTTTCGTAT
ACCCGTCTCCAGATCCATGGAATCCTTGTGGTGCACGGAGGTAGCGGTAT
CTGCCCCATTCGGTGATGAATGTCGTTGCTTCCTTTGCGTCGTTGGCTAA
TGGAACGCTGTGGTATCCGTTCCAGGCGTCGAGGGTTGTCTTTTTGGTTT
GCGGTGGAACTACGCTTACGATGTTGAAGGGTGATTGGCTGTAATGAGTT
TCTCGTTTGGTAGATGCGTTTAAATTTTGCAAATCTACTGTTCGGCGGGG
TGTGCCGTCTTTCTTGGGAACGGTAATCATCCGAGAACACCAGTTTGTAG
GTGTCCCAGTGGGGATTGGTTCGACTATCCCCAAGTTTACATCTTGATCG
AGTTGGCCTTTGACGGATTCTTTCCAGTGATGTGGTACTGGTATCGGTTT
ATGAACGGAAACGGGATTTTCGTCCTCACGAAATTGGATTTTTAGCGGTT
CGCCTGTCATCACTTGTAGCTTTTGATGTTTGCAAGTGTTAAATGCACTA
CTCGAAAAGTACGTTTTTATCCAAACCTCTAATTGTTCTGTATACTCTGG
TGTCGCTGGGAACGGAATCGTGTCAGGTATGGGTGGACATGGTGAACGAC
GTGAGCATCCGCACTCGGCAACGGAGTCGTCTGGTGAGTCTGTTGCATTC
AATTGGCTGGTTACAATCTGCTCCGGGAAAGTAGAGTGTACGATGTTCAA
GTTTTTCAGTGCtgtttttgatagaaaaaatcCTTTAACTTTGTCACATA
AGTAAACAATTTCTGTGGTGGTCGATGTGCCGACGGTGATGTCAGCAATG
ATTGCGCCTTTAATACTGATGTCGTTATTATTCACAGCGCGGAGACGATG
TCGAGCTTTTATCAAAGCGTTTTTACTATAATTTAATTGCGAAAGCAGTT
CTATTCCCGCTGTACATGTTTGAGCGCCAGTATCAGCGATGGCGCTAACT
TTGGTAGGTTGAAGTTTATTCAAAGAAAACGATTTACAAAGTTTCTGATG
TGCAGATGAGTTGAGTGAAATAGAGATATTTACTGTTGGCTGTGGGGATG
GCTTTTGTTCGATGAATTTATTATTTTCCCATTGTCCGTGAGGTACGCCA
TCTAGTCATAAGGACTCGGTGATGCTACCTAGGAAGGAT Coding sequence (CDS) from alignment at scaffold_363:109649..113237 >TCONS_00062363 ID=TCONS_00062363|Name=TCONS_00062363|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at scaffold_363:109649..113237 (Clytia hemisphaerica)
CTATTTCATAACGTAGTCTTTAAATCTCTCTGGTGGTCTTCTAGTGCGTG
TTGATCGTCTTGTTTGGATGACGGGTGTCGGAGGGCAGACGATTGAGGGT
GAAGTGTCTGCCTGAGTTGTCTCTTGTTCAGTTGGAATTGTTTCTGGTTG
ATTGAGTGCTGGTAGATCTGTCCCGTTAGTTTTGGGAAGATGTTCTTCTT
TTGTTTGTCGTAGAATGTCTAAATCGATGATATCGTTGCGTGTTTCGTTT
GGTATTGGGCGTAAAAACTGTCTATTACGTAGTGTCGTACGGCGGCTACC
ATCGACTACAACACGATATTGTCGATGGGGTAAACTTTCGCTGATTACCC
CGGTCTTTTCCCATCGAAGCGGAGTGTTACCAGTTTGGTTCTGAATGGAA
ACAGTGTCTCCAACTTTCAAATCAGGGAGGTGTCGTTGTGATTTCGTGCA
AGCTTGTTGGTGCCTTCTAGTAAAAGTGTTCTCGCGAATATCAGCTAGGT
CAATCCATTCTTTCCGGAAACGTCTTGGTGCTGGAAGATGGTCTCTGATG
TTGCGTCCAAATAGGAGCTCAGAAGGTGAGACTCCCATGTCTGGTGATGG
AGTGTTTCGGTACAGGAGAAGGGCTTTGGCGACATTATCGGTGTCCAGTG
ACCCAGATTGACTAATATTGGTCGTTAATATCCGTTTAACAGTCTTAACT
GCAGCTTCTGCTCGTCCGTTGCTTTGGGGGTAGCCGACAGATGATATTCG
ATGTGAAACGTTCCAAGATCTTAGAAAGTTTTCGAACTCGTGAGATGTGA
ATGGCGGACCCCCGTCTGATGACAGTTCTTCGGGGACGCCAAAATTCGTG
AAATATCTTCGGAGAATGTTAATAACCGTGGTAGCTGTAGCATCAGGTTT
GGTTGAGGCGACCTCTGGCCAACCGGAGAAGCGATCTGCATAAACGATAT
ACAGGCGTCCTGCCATGTGAAAGAGGTCAGCAACAGTCTGTTGGAATGGA
TAAATCGGCGGATCGGGGACTTCCGGTGTATCTTTGCGATTTGAGGGTGC
GATTTGGTTGCATCGGGTGCATTGATTCCTGTGATTTTGTATGTGTGAGC
TCATTTGTGGCCAAAAGAATCGTCTCTTTGCGTTTTCTCTCATTGCGCTG
ACGCCTTGGTGTCCGATGTGTAACTCTTCTAGTAGGGTACGTCGAAGAGC
GCGTGGTATCAGGACGCGATCGTCAAGCATAATTAGATTGTCTACACAAT
ATaagtcatttttcaatttccagTAGGGTAAGATGTGTTGTGGTAAAGTT
TCCTTGTTGGTTGGAAACCCCTCGAGAATTGTACGGTGGAGATCTATGTA
CTCGGGGTCTTCAGAGGCTTTGCGTGAGATGTCCTCAAGGGAACACGAGT
TGCTTTGGTTGAAACGGAGGTGGATAGAAGCCGAGATAGCAGCCTCGATC
TTATCAGAGGTGTTTGACGGTGGTGAAAGCGGTATCCGGGACATGAAGTT
TGCACCTACGTTTTTCTTGCCCGGGATGTGGATTACTTGGAAGTTATACA
TTAGAGTCTTTTCTCTGATGTCTAACAGTCTTGGGTTTTTTAGCTCGAAC
AATTCTCTTTTGTTAAATATTGGTACCAGAGACTCGTGGTCGACGGCGAT
AATAAGGTTAGGGCATCCCATTACAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062363-exon-scaffold_363-1491911889:109649..113237 | TCONS_00062363-exon-scaffold_363-1491911889:109649..113237 | Clytia hemisphaerica | exon |
| TCONS_00062363-exon-scaffold_363-1510915933:109649..113237 | TCONS_00062363-exon-scaffold_363-1510915933:109649..113237 | Clytia hemisphaerica | exon |
| TCONS_00062363-exon-scaffold_363-1575043694:109649..113237 | TCONS_00062363-exon-scaffold_363-1575043694:109649..113237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_363 | supercontig | scaffold_363:109649..113237 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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