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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062358 ID=TCONS_00062358|Name=TCONS_00062358|organism=Clytia hemisphaerica|type=transcript|length=1478bp
gaCTGACTGTAAGTATTCCCATGTttctttatggctggggatttgaattc
cattgttttcgagccagaaaatcCAGTAGGGACTGGTAGGGATGGAAAAA
GAGCACATATGACATTTAGAGGCTCCATCGGGGGTTTGTAAGGTACAAGG
ACGAATTAATTTATGGTGCTTAATGGAGGGGGATGCTTATGGAGGAAATA
TTTGAGAGTCATTCACACAGATTCACATACTTTTGGGTTGTATTTCCATt
gctgtaatttttttttactaaaataacaACGCCCTTCTTTGTTCtttaga
ttttattaaaaggcACTAAATAAGAATTAAACATGGCAGCTGAATCGGAA
GAAATACCTGGTTTCGAATTTGAGGCGTATAACCCATTTGCAATTCGAAG
TAATTCTGCCTTAGTAGAATATTGTCGTGCATTTTTAGCATTTGTTTCTG
GATCAGCGGCTGGCATTCTTGGATTAACTGGATTGAatggttttttcttt
tatatgaTTGCGTCAATCTTTATGTCTGTATTGTTAGGACTGAAAACTCA
GTCACAATGGGATCGATATTTCTTATCTAAATGGCATGTGTGGACAAATG
GTATTTTTGGTGAACTGTTTACTTATCTTTTAGTATGGACATTTATGTAT
GGTATTATTCATGTGTTTTGATTGGACGATATACAATTTTATCGAATTTA
TAGTTAAtacctttgaaaattgaatcattCATATAACTTTTGGCTACATC
ATTTAAAACATTCTTAGATTGGTTGGTACGAAAATCAGAATGAaagtgag
agaaaaaattagttGCTTTTTTTAATTGCATGCATTTTTGTCGTTGCAGT
GTGCAATATAAAACTAGTAACACTGGAGCTGAATTATCATGAGATATGTG
ATAAgatttataatttttcaaaatatttagaattttaagtttttgtaaat
tattttattatattttactACAACTTATTAGATGATCATGGGATAATAGA
CTCCAGTTGTAGTTGATCCATATTTAGTATTTGGAAAATACCTTTAGAAA
AAGTTCTCATTTTCCCCCTGACATTAGGAAAAATCCCCTTGCCCCCTTGA
CTTCTGCCTTTTTTTGTTATTCTCCAAATCATAATTGTTTTTGGAATGGC
TTAAGCCTATTACTCTCTGTGTATAAAATCATGGCTTAGTAAGCCAGAGT
AAGCTTATCATTTAGGCGCACTCGTGACTTTAAATCCTATTTCTGCAGAT
TTCTGTACttaataaaagaaatttgaaaagtgTGCCTTGAAAAATCAAGG
TGTTAAGTGTGTATAAATGTGCCTCAGTCAATAATTTAATGATTATTATA
ATAGACTATCGTGCGGAGTCATTAAATGTCTTTACTGCTGGAATGTGTTT
AGTACTCACATATTTTAAATACTTTTAAGTGCCACCTTTTGGGCTGTCCT
TTTGATGTAATCTCCTCACAAATTCCAG Run BLAST on NCBI transcript from alignment at scaffold_363:173153..174630- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062358 ID=TCONS_00062358|Name=TCONS_00062358|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at scaffold_363:173153..174630- (Clytia hemisphaerica)
GACTGACTGTAAGTATTCCCATGTTTCTTTATGGCTGGGGATTTGAATTC
CATTGTTTTCGAGCCAGAAAATCCAGTAGGGACTGGTAGGGATGGAAAAA
GAGCACATATGACATTTAGAGGCTCCATCGGGGGTTTGTAAGGTACAAGG
ACGAATTAATTTATGGTGCTTAATGGAGGGGGATGCTTATGGAGGAAATA
TTTGAGAGTCATTCACACAGATTCACATACTTTTGGGTTGTATTTCCATT
GCTGTAATTTTTTTTTACTAAAATAACAACGCCCTTCTTTGTTCTTTAGA
TTTTATTAAAAGGCACTAAATAAGAATTAAACATGGCAGCTGAATCGGAA
GAAATACCTGGTTTCGAATTTGAGGCGTATAACCCATTTGCAATTCGAAG
TAATTCTGCCTTAGTAGAATATTGTCGTGCATTTTTAGCATTTGTTTCTG
GATCAGCGGCTGGCATTCTTGGATTAACTGGATTGAATGGTTTTTTCTTT
TATATGATTGCGTCAATCTTTATGTCTGTATTGTTAGGACTGAAAACTCA
GTCACAATGGGATCGATATTTCTTATCTAAATGGCATGTGTGGACAAATG
GTATTTTTGGTGAACTGTTTACTTATCTTTTAGTATGGACATTTATGTAT
GGTATTATTCATGTGTTTTGATTGGACGATATACAATTTTATCGAATTTA
TAGTTAATACCTTTGAAAATTGAATCATTCATATAACTTTTGGCTACATC
ATTTAAAACATTCTTAGATTGGTTGGTACGAAAATCAGAATGAAAGTGAG
AGAAAAAATTAGTTGCTTTTTTTAATTGCATGCATTTTTGTCGTTGCAGT
GTGCAATATAAAACTAGTAACACTGGAGCTGAATTATCATGAGATATGTG
ATAAGATTTATAATTTTTCAAAATATTTAGAATTTTAAGTTTTTGTAAAT
TATTTTATTATATTTTACTACAACTTATTAGATGATCATGGGATAATAGA
CTCCAGTTGTAGTTGATCCATATTTAGTATTTGGAAAATACCTTTAGAAA
AAGTTCTCATTTTCCCCCTGACATTAGGAAAAATCCCCTTGCCCCCTTGA
CTTCTGCCTTTTTTTGTTATTCTCCAAATCATAATTGTTTTTGGAATGGC
TTAAGCCTATTACTCTCTGTGTATAAAATCATGGCTTAGTAAGCCAGAGT
AAGCTTATCATTTAGGCGCACTCGTGACTTTAAATCCTATTTCTGCAGAT
TTCTGTACTTAATAAAAGAAATTTGAAAAGTGTGCCTTGAAAAATCAAGG
TGTTAAGTGTGTATAAATGTGCCTCAGTCAATAATTTAATGATTATTATA
ATAGACTATCGTGCGGAGTCATTAAATGTCTTTACTGCTGGAATGTGTTT
AGTACTCACATATTTTAAATACTTTTAAGTGCCACCTTTTGGGCTGTCCT
TTTGATGTAATCTCCTCACAAATTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062358-exon-scaffold_363-1575043694:173153..174630 | TCONS_00062358-exon-scaffold_363-1575043694:173153..174630 | Clytia hemisphaerica | exon |
| TCONS_00062358-exon-scaffold_363-1510915933:173153..174630 | TCONS_00062358-exon-scaffold_363-1510915933:173153..174630 | Clytia hemisphaerica | exon |
| TCONS_00062358-exon-scaffold_363-1491911889:173153..174630 | TCONS_00062358-exon-scaffold_363-1491911889:173153..174630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_363 | supercontig | scaffold_363:173153..174630 - |
Blast
BLAST of TCONS_00062358 vs. Swiss-Prot (Human)
Match: EMC6 (ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.897e-23 Identity = 56/114 (49.12%), Postives = 82/114 (71.93%), Query Frame = 3
Query: 333 MAA--ESEEIPGFEFEAYNPFAIRSNSALVEYCRAFLAFVSGSAAGILGLTGLNGFFFYMIASIFMSVLLGLKTQSQWDRYFLSKWHVWTNGIFGELFTYLLVWTFMYGIIHVF 668
MAA E P F EA A+R N+A+++YCR ++ +SG+ AGILGLTGL GF FY++AS+ +S+LL LK +W++YF S+ ++T G+ G LFTY+L WTF+YG++HV+
Sbjct: 1 MAAVVAKREGPPFISEA----AVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110
The following BLAST results are available for this feature:
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