TCONS_00062354 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062354
Unique Name	TCONS_00062354
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4123

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_363:76051..81610-

transcript sequence

>TCONS_00062354 ID=TCONS_00062354|Name=TCONS_00062354|organism=Clytia hemisphaerica|type=transcript|length=4123bp
gaaacattgagcaatctcgctggggttattttgtctttttatgttgaata
ttagtacaagacaccatttagaaaccattttgaccctttactgggctttc
gtagtcttaaaatggacaaaaaatgccattttactcatttttcgctttat
tgcgaatcaaagaccccctggggaatgctggatttttgacttaggaggtt
aaaaattgcgcaaaatgtcttacaatagattaaattttcacacaaaaata
ttacactttgaattttttgacatcatgctaaaaatggtagttgacgatct
accctatcAATATAgtatgattgacagattgaagttttcacccgcgcagg
agttcgcggagcgttctcggctcaatccttggaccgcgctaaaaatggta
gactgagctgtgatagatcatttcgatggaagttgttgNNNNNNNNNNNN
NNNNNgacagaaaatcgtttgttttattgtcaatgatgacagtgcggtta
ttaattttgttagatctgacaaattgatgtttgtaagtgcactttatagt
tttgattcccattgaagaatcatattctggttttcatgttattagatgct
gttttagagctttaggtctacactgtaagagaagaaagattctttttcaa
tcacTGATTCCAACTTTCACAtaattcctatctctaaagaagggtgtcga
aattagaagacggcgggatgtcgagattagaccactTACGGTAGGAGTCC
ACACCCCCTGGAAAGtggaattttgtgaaaaagggcctAGAAAGTGACTA
TTGATGCCAGTTTTGGAGgagagaaccccctggaaacctttaataacccc
cttggaaaatccaaaaatgaccaaaagccccttggaaaatcaaggctcag
accCCCTTGGAAAAGTTCCCCTTATTTATTCCCCCTAATTATTTTagcac
tagaaagctgaaaacctcagctttcagatggtgtatgcttttttttcaaa
aaattgcaatttcttctatttttcgaattcCAGAcagcctgtagattttc
aaataagcAGCATGTGCTAGATTGTAGTCTAATCTTACCAtgggtttact
aaaaagaaaacgcgattgaaaagatgaaccagctcattCAAGAATTTTGC
GGTGCCATGTCAGCGCTAAGTCATGTTTTCACCTTGACGCCGGTGGTCAT
TAATGATTTCCAGGTTTTTTTTTCCTCATAAGATGGCATCAAGTTTTGTT
ATTTGTGTGATATTTGGGGTAATTTTGAAAAGAGGGCTAGAAGTGAGTTT
GCAATTCTTATCTTAAGCTTATCAAGACAAGATCTATGTAAGACTTTTCT
ATGCAGCAATAAAACTTTTTCGGTCAGTACGTTTTTAGGTGGGGTTGGTC
AGATGACATCAAACTAATAAGTCCAGCCTTGTCCAATTTTAATTCGAAGG
TTAGAAGAAAGGACATCTGCTCAAATTACTCAGTTATTTTGGGAGAGAGT
TGAACAGGATTGGCTAAATTTGACAAGAAATTATATCAGATAATGTGTAA
GACGGTTGATGTTCTGGGGCTCCTACAATTGACCAAGTCTGGGTTGAAAA
ACAGGTCATTCACCATCTGACTGGTTGTTATTTGGTATAAGGTTTTTGAG
GAAGCTCCATGTCAGTCCATGTGGTTCATCTATTGGTCATCTTGACCAAT
GTGACTTTTCAGGGTGGTGGATTTTCCGAATCAAAACAGTTACTCTGGAC
AATCTCAAGACTTTGTCTGTCAGCTTATGCGGTGTTTGAGTTTACAGTCA
TTTGACATCACCACTCCAAGGTCAACATAATCATACTTGTGAATTTCTTC
TACTTGTGTAGCTTGTCTTTGCTGTAACTTCAGTTTGACACCTTTGAACT
CCATGGTGTTATCAACcaaccaataataaactgaattTAGGTCTCCTTGA
AGTTTTAGAGTATCCTCAATGTTTTCTAACGTCTTTGATAATTCTTGTGT
CATCTGCAAAACTTTGTGTTGAAGAGTGTTGGGCTTCATCAATGTCCCCC
TTAAAGATTAGGAAGATAGTCAGAGTCTCCTTTTTCCACCATCATGGTGA
AGTTGAGCTCCAAATCCTGGACTAACGAGTTTTGAGCTATAACTTTTGGA
TAGCTTTTAAAAGATTGTAATCACAATTATAACTAACAAATTTTTTATTA
AGTATTGTGCaataaaaagcctaaaaagaccaatttttgTTAACAAAGTT
ATTGAATTTGTAGGAAGGTTTTGTATTTTGCTTTAAGCtgtatttgttaa
aaaattttaatcataaaaatattcaaCTGACTATTCAACTGCTAAGCAGT
TTTGCCATAACAAAGACAAgcttgaagaagaagaagaaaatctccaattt
ttaaaactttcaacaaaattacTTGTCGTTATGTATTGAAAGACGTCTGA
AGACgttcaacaacaaaaattttgtttgataaataTTTTGTAGTGGTACT
TTActagaatattttttaaacaaatgacATTTATGTACCAGACGAATAAA
TAAATGTGATTGCTCATACCTGGTTTTCACAATCTGTGTgtgtttaattt
ttgaaatgttttcataATATACTGTGTATTGCTATCAGTTCAATAAGCCT
GTATTTACACCTCTACTGATTCTCAAAAGCATCTCAGGCAAGTTAGGACT
CCCTCCTTTGCAACAATGAATTTATCTCGAAGTAGAAAGCTTTTTTACAA
CAATCTGGAGGGTAAGTTTCAGGTACGTAGTATTATATTTGAGCTTTGAA
AGTTCTTTTTATACAGCTAGTCCACTTAATCAAAAACAATAGCTcttttt
taagacttttttttaataaatcttCGAATAAAATTTTGTAATAATTTTCA
ATACCCTAAAAACTGATCTTGATTTAGTGTAATCTGATCTAGTCTTTGTT
TGAAActagacttttttttaaattggtgCCGACACAAGCATTTATAGAGA
ACCCTTTTCTAATATTTGGATCAAACTTTTAGAGTAAATTTATACCTGGA
AATGCCTCGAAGTAGATCAAATTCTCGCTCGAGGAGTCGTAGTACATCAc
ccaagaaaagaaaaagtaagGATCGGGAAAGAGAGCGTGATAGAGACAGA
GATCGGGATCGGCATAAGAGAAGCAGTCATCGCCATCGTAGTCGGTCACC
TGCTCGATCTAAAAGAAGAAGTCGCAGCAGATCACCAAGTGTTGATCGGT
TTGGACGGTCCACCAAACGCAGGGATAAATTTGCTGATGAAGATGATGAT
ACCAGAGTGGAACCaggaatgaaaaatgaagagatGGAAAGACAAAGAAA
AATTCGAGCAACAGAGATGCAAGCGAAATTTATTGAAGAAGAAACGCAAA
GGCGGATCGAAGATGTGGTCATGAAGAGAGTAGAAGAGGAGTTAGCCAAA
CGAAAAATCGATGTTGACGAAGAAGTGATGAGGAAAGTAGAAGAAGCCAA
GAAACACGTTGAACATCATTTGGAAGGCGAATACGAACGAAGGACGAAAG
AAATTGCTGAACAGTTCAAATTAAAAGAGGAGCAATTAAAGCAAGAAATC
GAAAGGCTGAAAAAAGAAATCGACCTCGCCTATTTGAAAGTCCAAGATAC
AGAGAAAAAATTGGCCGAAGAACGACTCACTATGCTCGAAAAACAGCGTG
GCTTAGAGGACGAAAAGCGACAAATCGAAGCGGACTTTaagaaaaacgaa
agaaaagcACAAGAAGTGATATTAAATAAAAAGAACTCGAGACCAAAATT
GTCTTTTGGATTGAAAAGTCTACCCAAATAAAATGAATGTCCGGGTAAGA
TTATGTGTTAGATGGACACTGTAAATATGTTATCTGATAAATGGTCATAA
GTTGAACGAACATTTCGTGTATTGTTGACACGATTTCACGTCTAATGGTC
ATAAATTGAACGAACATTTCGTGTATACGTTACATGTTTCTTGGAGAGGT
ACTACTGGGGGATTACGTCGTAAGTtttaaaatcacattttttctttaga
atttattattttatttgaatattatgtatatttttattctttttacaaaa
tatgttaaaagtaataaaaaacg

Run BLAST on NCBI

transcript from alignment at scaffold_363:76051..81610-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062354 ID=TCONS_00062354|Name=TCONS_00062354|organism=Clytia hemisphaerica|type=transcript|length=5560bp|location=Sequence derived from alignment at scaffold_363:76051..81610- (Clytia hemisphaerica)
GAAACATTGAGCAATCTCGCTGGGGTTATTTTGTCTTTTTATGTTGAATA
TTAGTACAAGACACCATTTAGAAACCATTTTGACCCTTTACTGGGCTTTC
GTAGTCTTAAAATGGACAAAAAATGCCATTTTACTCATTTTTCGCTTTAT
TGCGAATCAAAGACCCCCTGGGGAATGCTGGATTTTTGACTTAGGAGGTT
AAAAATTGCGCAAAATGTCTTACAATAGATTAAATTTTCACACAAAAATA
TTACACTTTGAATTTTTTGACATCATGCTAAAAATGGTAGTTGACGATCT
ACCCTATCAATATAGTATGATTGACAGATTGAAGTTTTCACCCGCGCAGG
AGTTCGCGGAGCGTTCTCGGCTCAATCCTTGGACCGCGCTAAAAATGGTA
GACTGAGCTGTGATAGATCATTTCGATGGAAGTTGTTGNNNNNNNNNNNN
NNNNNGACAGAAAATCGTTTGTTTTATTGTCAATGATGACAGTGCGGTTA
TTAATTTTGTTAGATCTGACAAATTGATGTTTGTAAGTGCACTTTATAGT
TTTGATTCCCATTGAAGAATCATATTCTGGTTTTCATGTTATTAGATGCT
GTTTTAGAGCTTTAGGTCTACACTGTAAGAGAAGAAAGATTCTTTTTCAA
TCACTGATTCCAACTTTCACATAATTCCTATCTCTAAAGAAGGGTGTCGA
AATTAGAAGACGGCGGGATGTCGAGATTAGACCACTTACGGTAGGAGTCC
ACACCCCCTGGAAAGTGGAATTTTGTGAAAAAGGGCCTAGAAAGTGACTA
TTGATGCCAGTTTTGGAGGAGAGAACCCCCTGGAAACCTTTAATAACCCC
CTTGGAAAATCCAAAAATGACCAAAAGCCCCTTGGAAAATCAAGGCTCAG
ACCCCCTTGGAAAAGTTCCCCTTATTTATTCCCCCTAATTATTTTAGCAC
TAGAAAGCTGAAAACCTCAGCTTTCAGATGGTGTATGCTTTTTTTTCAAA
AAATTGCAATTTCTTCTATTTTTCGAATTCCAGACAGCCTGTAGATTTTC
AAATAAGCAGCATGTGCTAGATTGTAGTCTAATCTTACCATGGGTTTACT
AAAAAGAAAACGCGATTGAAAAGATGAACCAGCTCATTCAAGAATTTTGC
GGTGCCATGTCAGCGCTAAGTCATGTTTTCACCTTGACGCCGGTGGTCAT
TAATGATTTCCAGGTTTTTTTTTCCTCATAAGATGGCATCAAGTTTTGTT
ATTTGTGTGATATTTGGGGTAATTTTGAAAAGAGGGCTAGAAGTGAGTTT
GCAATTCTTATCTTAAGCTTATCAAGACAAGATCTATGTAAGACTTTTCT
ATGCAGCAATAAAACTTTTTCGGTCAGTACGTTTTTAGGTGGGGTTGGTC
AGATGACATCAAACTAATAAGTCCAGCCTTGTCCAATTTTAATTCGAAGG
TTAGAAGAAAGGACATCTGCTCAAATTACTCAGTTATTTTGGGAGAGAGT
TGAACAGGATTGGCTAAATTTGACAAGAAATTATATCAGATAATGTGTAA
GACGGTTGATGTTCTGGGGCTCCTACAATTGACCAAGTCTGGGTTGAAAA
ACAGGTCATTCACCATCTGACTGGTTGTTATTTGGTATAAGGTTTTTGAG
GAAGCTCCATGTCAGTCCATGTGGTTCATCTATTGGTCATCTTGACCAAT
GTGACTTTTCAGGGTGGTGGATTTTCCGAATCAAAACAGTTACTCTGGAC
AATCTCAAGACTTTGTCTGTCAGCTTATGCGGTGTTTGAGTTTACAGTCA
TTTGACATCACCACTCCAAGGTCAACATAATCATACTTGTGAATTTCTTC
TACTTGTGTAGCTTGTCTTTGCTGTAACTTCAGTTTGACACCTTTGAACT
CCATGGTGTTATCAACCAACCAATAATAAACTGAATTTAGGTCTCCTTGA
AGTTTTAGAGTATCCTCAATGTTTTCTAACGTCTTTGATAATTCTTGTGT
CATCTGCAAAACTTTGTGTTGAAGAGTGTTGGGCTTCATCAATGTCCCCC
TTAAAGATTAGGAAGATAGTCAGAGTCTCCTTTTTCCACCATCATGGTGA
AGTTGAGCTCCAAATCCTGGACTAACGAGTTTTGAGCTATAACTTTTGGA
TAGCTTTTAAAAGATTGTAATCACAATTATAACTAACAAATTTTTTATTA
AGTATTGTGCAATAAAAAGCCTAAAAAGACCAATTTTTGTTAACAAAGTT
ATTGAATTTGTAGGAAGGTTTTGTATTTTGCTTTAAGCTGTATTTGTTAA
AAAATTTTAATCATAAAAATATTCAACTGACTATTCAACTGCTAAGCAGT
TTTGCCATAACAAAGACAAGCTTGAAGAAGAAGAAGAAAATCTCCAATTT
TTAAAACTTTCAACAAAATTACTTGTCGTTATGTATTGAAAGACGTCTGA
AGACGTTCAACAACAAAAATTTTGTTTGATAAATATTTTGTAGTGGTACT
TTACTAGAATATTTTTTAAACAAATGACATTTATGTACCAGACGAATAAA
TAAATGTGATTGCTCATACCTGGTTTTCACAATCTGTGTGTGTTTAATTT
TTGAAATGTTTTCATAATATACTGTGTATTGCTATCAGTTCAATAAGCCT
GTATTTACACCTCTACTGATTCTCAAAAGCATCTCAGGCAAGTTAGGACT
CCCTCCTTTGCAACAATGAATTTATCTCGAAGTAGAAAGCTTTTTTACAA
CAATCTGGAGGGTAAGTTTCAGGTACGTAGTATTATATTTGAGCTTTGAA
AGTTCTTTTTATACAGCTAGTCCACTTAATCAAAAACAATAGCTCTTTTT
TAAGACTTTTTTTTAATAAATCTTCGAATAAAATTTTGTAATAATTTTCA
ATACCCTAAAAACTGATCTTGATTTAGTGTAATCTGATCTAGTCTTTGTT
TGAAACTAGACTTTTTTTTAAATTGGTGCCGACACAAGCATTTATAGAGA
ACCCTTTTCTAATATTTGGATCAAACTTTTAGAGTAAATTTATACCTGGA
AATGCCTCGAAGTAGATCAAATTCTCGCTCGAGGAGTCGTAGTACATCAC
CCAAGAAAAGAAAAAGTAAGGTAAGAGCAGGATGGCATCGTTTTCAAACT
TTTTTTAAATACAGCAGTTTTGATTTGGCACTGTTTCCAATTGTGATAAT
TATATTTTGTTTATCTTGTCTTATTTCAACTGGGCTTTCTAGCCTTTCTA
TTGTAGCCGTCTATAGCTAATTGGTCTAAGTAAATCTCTCATTCTTTTTT
TGTGTAATTTCAGGATCGGGAAAGAGAGCGTGATAGAGACAGAGATCGGG
ATCGGCATAAGAGAAGCAGTCATCGCCATCGTAGTCGGTCACCTGCTCGA
TCTAAAAGAAGAAGTCGCAGCAGATCACCAAGTGTTGATCGGTTTGGACG
GTCCACCAAACGCAGGGATAAATTTGCTGATGAAGATGATGATACCAGAG
TGGAACCAGGAATGAAAAATGAAGAGATGGAAAGACAAAGAAAAATGTAA
GCCAAGTCTTAGCCGAAATTATCTTTTCAACAAGGTTCTGATTCCAGCTG
ATTCTGTTTTCCCATCAAGATCAAAAATATACTAAAATGTACAGACTATC
AATGTTTTTTTGGAATTTTGTTGTTCCCGTATACGCTGGTATACGTGTTA
TCACCCTCTCTGTTGTGTTTAAGATCTCTCATTAAATTTTATATGAAATT
GATGCGTTAGTGGTATTTCTTAGCCTTCTTTGAATGTGAACTGAATTATG
ATATGTTCCTGACAGGACAAAAATAAATCATCAATCACTGATTCTATATG
GCTGTAATTTTACAAGTATCTTGTAAATGTGTCCTGTTCGCCCTTTTGAT
GTTGTAACATAAAAAACTATTGATGAATTTGGTTATTGCTTTTTCAGTCG
AGCAACAGAGATGCAAGCGAAATTTATTGAAGAAGAAACGCAAAGGCGGA
TCGAAGATGTGGTCATGAAGAGAGTAGAAGAGGAGTTAGCCAAACGAAAA
ATCGATGTTGACGAAGAAGTGATGAGGAAAGTAGAAGAAGCCAAGAAACA
CGTTGAACATCATTTGGAAGGCGAATACGAACGAAGGACGAAAGAAATTG
CTGAACAGTTCAAATTAAAAGAGGTACGTTTTCACTTTATTTAGGATGTT
CGATTGGTTCTTTGAATTCATGATATGCACCACTGGAGAGTCTTCTGAGA
ACTTTTAAAATTTTCGATCCAATACATCACTTAAACAATAGAAAAGGTGA
CGTATTTGATGAAAAAACAAACAGAAAAGTTGCATAATTTCGTGAAGTCA
TTGCAGTGGTGTGTAAGAGAAAGATTCGAATTTCGGGGGGGGGGTCAAGT
TGATTGTTCAGCTTAAGGGATTAATGTTAAAGTTCGGACTACAAAAAAAG
ATTCAAATAATGGAGGTTCGACGAATAAAGAGAGAGTTGACATTAACACA
TTTCCAGCCAAGTCAAAGACTTCATTACTCAATTCCTAGAGAAATATGAG
AAACAAATAATGCAATTCCGTTTTTAAGCAATATTCTTTTTGGAGTCTTT
GTTCACACAGCAATAATATTTCTTCCTTTTGTAGGAGCAATTAAAGCAAG
AAATCGAAAGGCTGAAAAAAGAAATCGACCTCGCCTATTTGAAAGTCCAA
GATACAGAGAAAAAATTGGTAGGTTTCTGAACTATGAATGAAAGCACTTT
CGATGTTTATTAGCTCTGAATCCTTCCCTGTGTTATACATTTGAATTGCA
ATTCGCAACGTGATGCAGCCATTCAATATTGACAACTCCACAAATGGCGA
AAGTGGAAACGGAACTAGAAAGTTTGAGTGGAGTTAACTTAATAACGGGG
GAGGTTGCACCGTAATGCCTACGCCTTTTTTTATGAATCGCCGTCAATAC
TGACAGCAAAAAATCCTTATTACTGAATTACCCTCGATTCTTTTTTCAAC
ACTGAGACAGACATAAAAAGAGACTGATGCCGTAAATAGTTGTCCTTATT
TATTTCAACCCTATTTTTTGACTCAATTGATTGATTTTTTTTCGTACTAG
GCCGAAGAACGACTCACTATGCTCGAAAAACAGCGTGGCTTAGAGGACGA
AAAGCGACAAATCGAAGCGGACTTTAAGAAAAACGAAAGAAAAGCACAAG
AAGTGATATTAAATAAAAAGAACTCGAGACCAAAATTGTCTTTTGGATTG
AAAAGTCTACCCAAATAAAATGAATGTCCGGGTAAGATTATGTGTTAGAT
GGACACTGTAAATATGTTATCTGATAAATGGTCATAAGTTGAACGAACAT
TTCGTGTATTGTTGACACGATTTCACGTCTAATGGTCATAAATTGAACGA
ACATTTCGTGTATACGTTACATGTTTCTTGGAGAGGTACTACTGGGGGAT
TACGTCGTAAGTTTTAAAATCACATTTTTTCTTTAGAATTTATTATTTTA
TTTGAATATTATGTATATTTTTATTCTTTTTACAAAATATGTTAAAAGTA
ATAAAAAACG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039069	XLOC_039069	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_363	supercontig	scaffold_363:76051..81610 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.14379	5.88855	2.63376	1.33159	6.07283	4.44795	7.15967	8.50202	11.4312	7.86954	16.2676	14.6233	14.5934	15.5477	8.18073	6.63732	9.04614	10.5977	10.7753	8.41213	12.8159	12.4936	6.49475	8.34648	13.8465	12.7459	11.9162	12.1723	8.03007	7.92054

Blast

[Close]

BLAST of TCONS_00062354 vs. Swiss-Prot (Human)
Match: ARGL1 (Arginine and glutamate-rich protein 1 OS=Homo sapiens GN=ARGLU1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.540e-18
Identity = 81/191 (42.41%), Postives = 124/191 (64.92%), Query Frame = 1

Query: 3250 FGRSTKRRDKFADEDDDTRVEPGMKNEEMERQRKIRATEMQAKFIEEETQRRIEDVVMKRVEEELAKRKIDVDEEVMRKVEEAKKHVEHHLEGEYER-RTKEIAXXXXXXXXXXXXXXXXXXXXIDLAYLKVQDTEKKLAEERLTMLEKQRGLEDEKRQIEADFKKNERKAQEVILNKKNSRPKLSFGLKS 3819
            FGR+  +R      D+  + E   K  E ERQRKIR  E++ K IEEET RR+E++V KRVEEEL KRK +++ EV+R+VEEAK+ +E  L  E ER R  E+A Q   +EE+  +  E  +   +    K+ + + KLAEE+L ++E+QR + +E+ ++E + ++ +++ Q++IL K  SRPKLSF LK+
Sbjct:   85 FGRTVSKRSSL---DEKQKREEEEKKAEFERQRKIRQQEIEEKLIEEETARRVEELVAKRVEEELEKRKDEIEREVLRRVEEAKRIMEKQLLEELERQRQAELAAQKAREEEERAKREELERIL-EENNRKIAEAQAKLAEEQLRIVEEQRKIHEERMKLEQERQRQQKEEQKIILGKGKSRPKLSFSLKT 271

The following BLAST results are available for this feature:

BLAST of TCONS_00062354 vs. Swiss-Prot (Human)

BLAST of TCONS_00062354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARGL1	4.540e-18	42.41	Arginine and glutamate-rich protein 1 OS=Homo sapi...	[more]

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TCONS_00062354 (transcript) - C. hemisphaerica