TCONS_00062320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062320
Unique NameTCONS_00062320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062320 ID=TCONS_00062320|Name=TCONS_00062320|organism=Clytia hemisphaerica|type=transcript|length=837bp
NNattttgaccatagttttgaaatgtgatttagagggttttgggcataaa
tttgtttgataaaatgtttacagtatacccctggttgtcaaaacggaggt
ttggggcccccaaaacgtaggtgtagttaaaatcaaattattatgcccag
tggtaatagggggagaaaccatgaacatatttgtgttttccctcaAATTT
TCGACCCGATAGATGTaaaattattgatttttataaaatatttctagatT
TTCGTTATTGCAataagtccaaactgaaaatttagaaattttcaaaatga
caattttgatttaacaacaaGATAAGAATCAGCATTTCTTATGGAATGGT
AAGCATTATTTTTGAGGCACACAAGTTATGGATTTACGTCAAAATATATT
tatcttctacaagattacttTGTACgggaaagaaagaaacattCATCGTA
TGAATTGAGCTTTTCACTAGTAGCAGTACATCAAGTTTCAGATACTATTG
ACTTTGACCAAAATGTGCTTACTTATTTTCTTGATTAAGTTtgctatttt
ttttcttatagttATCACTTTACATGTTTAACTTAGATTCTTTGGGATCT
CTTGGATCAAGCGAATTTGTTAAGTTTTCAATACTTGAATTTACCTAGAA
TGAATTTATACATCATATTTTACAACTTTACAGTTGTTATAGGTGATTAT
ATATGAACAAGATGCATGTATTTTTGTAGATAAACTGAACTAAATATCTg
gaattctttatttttattatttatccTGTGATCAATTTAGCTTTCTTCTG
GTTCAAAATAGAATCAAGATGATTGAGATTCTACTAG
Run BLAST on NCBI

transcript from alignment at scaffold_362:927370..928206

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062320 ID=TCONS_00062320|Name=TCONS_00062320|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at scaffold_362:927370..928206 (Clytia hemisphaerica)
CTAGTAGAATCTCAATCATCTTGATTCTATTTTGAACCAGAAGAAAGCTA
AATTGATCACAggataaataataaaaataaagaattccAGATATTTAGTT
CAGTTTATCTACAAAAATACATGCATCTTGTTCATATATAATCACCTATA
ACAACTGTAAAGTTGTAAAATATGATGTATAAATTCATTCTAGGTAAATT
CAAGTATTGAAAACTTAACAAATTCGCTTGATCCAAGAGATCCCAAAGAA
TCTAAGTTAAACATGTAAAGTGATaactataagaaaaaaaatagcaAACT
TAATCAAGAAAATAAGTAAGCACATTTTGGTCAAAGTCAATAGTATCTGA
AACTTGATGTACTGCTACTAGTGAAAAGCTCAATTCATACGATGaatgtt
tctttctttcccGTACAaagtaatcttgtagaagataAATATATTTTGAC
GTAAATCCATAACTTGTGTGCCTCAAAAATAATGCTTACCATTCCATAAG
AAATGCTGATTCTTATCttgttgttaaatcaaaattgtcattttgaaaat
ttctaaattttcagtttggacttatTGCAATAACGAAAatctagaaatat
tttataaaaatcaataattttACATCTATCGGGTCGAAAATTtgagggaa
aacacaaatatgttcatggtttctccccctattaccactgggcataataa
tttgattttaactacacctacgttttgggggccccaaacctccgttttga
caaccaggggtatactgtaaacattttatcaaacaaatttatgcccaaaa
ccctctaaatcacatttcaaaactatggtcaaaatNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039058XLOC_039058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062320-exon-scaffold_362-1491911889:927370..928206TCONS_00062320-exon-scaffold_362-1491911889:927370..928206Clytia hemisphaericaexon
TCONS_00062320-exon-scaffold_362-1510915933:927370..928206TCONS_00062320-exon-scaffold_362-1510915933:927370..928206Clytia hemisphaericaexon
TCONS_00062320-exon-scaffold_362-1575043694:927370..928206TCONS_00062320-exon-scaffold_362-1575043694:927370..928206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:927370..928206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21591	0.645775	0.659184	0.434944	1.17831	0.766004	3.9054	3.31674	2.17665	1.94731	1.22683	1.13131	1.1226	1.15277	1.20761	0.606408	0.762534	1.07628	0.837206	0.856845	1.52335	2.63317	1.12322	1.12816	0.738307	0.967543	1.59383	1.79622	1.71255	1.99609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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