TCONS_00062317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062317
Unique NameTCONS_00062317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062317 ID=TCONS_00062317|Name=TCONS_00062317|organism=Clytia hemisphaerica|type=transcript|length=854bp
AAGAAATCTTATGATGCTGAACACAatcttttatttattatttctaatgt
tatttttcttcaaataaatTCAGGAGCCTTTTTGAAGGCTATTCATTCTT
TTAAAGCATGTTAGTCTAAAAAAACTAAATAGAAGAATACATacaaaaat
ctattaatttgcttgaagcaaaaaaaacttaacaaaaattttgtccAAAA
ATAATACTCCAAACCAAAAAGAAACATCAATGAGGTTTTGGTACATGACC
ATCAACATAAAAATTACGCGTAATTTTGGGTAGCGTTAATTCAATACCGT
CCATTTCTTTGGTCAATATAATTTGACACCCAAGTCGTGAATTGTCCTGG
AGAAATGGGGCCATATCAAGCATGTCATCCTCCTCTTCTAACGGCTCTGA
TAACATATCAAAAAAGTCTTCATTCACGTAAACATGACATGTAGAACATG
CTAAAGACGCCTCACATGCTCCTTCCAAGTCAACATTATTTCTATGCGCC
AAGTATAAAACATTGTCACCAATTTTAGCCTTGACGTGTACTTTATTATC
ATTGCGATCAATATAAGTTACATTCACAgtttcttcttcactttgagGTC
CCGAATGATCACCACCATGCTTCAAAGTACAGGTTGCTTGAAATTCTCTA
CATGGGAAGGTTCTAATAGGCAGTGTTTTTATACATTTTGGCAGAGTTGA
CTTGCAAACAAAGCTTTTTGCCAGTGTCTTAAAAGGACAGGATCTCACAA
TATGTCCCAGTGAATTCATATTTTAAGTTGTCTTATCATTTAGTTTAGTT
CTTTTATTCCTAttagctgaaaaaaaaataaaaaggttgtTAGAAACTCT
TATA
Run BLAST on NCBI

protein sequence of TCONS_00062317-protein

>TCONS_00062317-protein ID=TCONS_00062317-protein|Name=TCONS_00062317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MNSLGHIVRSCPFKTLAKSFVCKSTLPKCIKTLPIRTFPCREFQATCTLK
HGGDHSGPQSEEETVNVTYIDRNDNKVHVKAKIGDNVLYLAHRNNVDLEG
ACEASLACSTCHVYVNEDFFDMLSEPLEEEDDMLDMAPFLQDNSRLGCQI
ILTKEMDGIELTLPKITRNFYVDGHVPKPH
Run BLAST on NCBI

transcript from alignment at scaffold_362:728094..728947

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062317 ID=TCONS_00062317|Name=TCONS_00062317|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at scaffold_362:728094..728947 (Clytia hemisphaerica)
TATAAGAGTTTCTAacaacctttttatttttttttcagctaaTAGGAATA
AAAGAACTAAACTAAATGATAAGACAACTTAAAATATGAATTCACTGGGA
CATATTGTGAGATCCTGTCCTTTTAAGACACTGGCAAAAAGCTTTGTTTG
CAAGTCAACTCTGCCAAAATGTATAAAAACACTGCCTATTAGAACCTTCC
CATGTAGAGAATTTCAAGCAACCTGTACTTTGAAGCATGGTGGTGATCAT
TCGGGACctcaaagtgaagaagaaacTGTGAATGTAACTTATATTGATCG
CAATGATAATAAAGTACACGTCAAGGCTAAAATTGGTGACAATGTTTTAT
ACTTGGCGCATAGAAATAATGTTGACTTGGAAGGAGCATGTGAGGCGTCT
TTAGCATGTTCTACATGTCATGTTTACGTGAATGAAGACTTTTTTGATAT
GTTATCAGAGCCGTTAGAAGAGGAGGATGACATGCTTGATATGGCCCCAT
TTCTCCAGGACAATTCACGACTTGGGTGTCAAATTATATTGACCAAAGAA
ATGGACGGTATTGAATTAACGCTACCCAAAATTACGCGTAATTTTTATGT
TGATGGTCATGTACCAAAACCTCATTGATGTTTCTTTTTGGTTTGGAGTA
TTATTTTTggacaaaatttttgttaagttttttttgcttcaagcaaatta
atagatttttgtATGTATTCTTCTATTTAGTTTTTTTAGACTAACATGCT
TTAAAAGAATGAATAGCCTTCAAAAAGGCTCCTGAatttatttgaagaaa
aataacattagaaataataaataaaagatTGTGTTCAGCATCATAAGATT
TCTT

Coding sequence (CDS) from alignment at scaffold_362:728094..728947

>TCONS_00062317 ID=TCONS_00062317|Name=TCONS_00062317|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_362:728094..728947 (Clytia hemisphaerica)
ATGAATTCACTGGGACATATTGTGAGATCCTGTCCTTTTAAGACACTGGC
AAAAAGCTTTGTTTGCAAGTCAACTCTGCCAAAATGTATAAAAACACTGC
CTATTAGAACCTTCCCATGTAGAGAATTTCAAGCAACCTGTACTTTGAAG
CATGGTGGTGATCATTCGGGACctcaaagtgaagaagaaacTGTGAATGT
AACTTATATTGATCGCAATGATAATAAAGTACACGTCAAGGCTAAAATTG
GTGACAATGTTTTATACTTGGCGCATAGAAATAATGTTGACTTGGAAGGA
GCATGTGAGGCGTCTTTAGCATGTTCTACATGTCATGTTTACGTGAATGA
AGACTTTTTTGATATGTTATCAGAGCCGTTAGAAGAGGAGGATGACATGC
TTGATATGGCCCCATTTCTCCAGGACAATTCACGACTTGGGTGTCAAATT
ATATTGACCAAAGAAATGGACGGTATTGAATTAACGCTACCCAAAATTAC
GCGTAATTTTTATGTTGATGGTCATGTACCAAAACCTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039055XLOC_039055Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062317-proteinTCONS_00062317-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062317-exon-scaffold_362-1491911889:728094..728947TCONS_00062317-exon-scaffold_362-1491911889:728094..728947Clytia hemisphaericaexon
TCONS_00062317-exon-scaffold_362-1510915933:728094..728947TCONS_00062317-exon-scaffold_362-1510915933:728094..728947Clytia hemisphaericaexon
TCONS_00062317-exon-scaffold_362-1575043694:728094..728947TCONS_00062317-exon-scaffold_362-1575043694:728094..728947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:728094..728947 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
92.5722	84.4259	45.7748	43.1384	15.4287	12.6609	12.234	14.0353	14.1371	11.942	12.3713	10.77	6.91392	5.09071	9.8697	9.82079	20.6457	19.5953	2.51424	5.81261	14.5717	14.6301	73.662	58.885	10.7481	14.1778	17.4224	13.2007	31.8073	35.019
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001055Adrenodoxin
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
IPR018298Adrenodoxin_Fe-S_BS
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0051536 iron-sulfur cluster binding
Blast
[Close]
BLAST of TCONS_00062317 vs. Swiss-Prot (Human)
Match: FDX2 (Ferredoxin-2, mitochondrial OS=Homo sapiens GN=FDX2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.461e-51
Identity = 92/141 (65.25%), Postives = 111/141 (78.72%), Query Frame = -2 
Query:  230 REFQATCTLKHGG-DHSGPQSEEETVNVTYIDRNDNKVHVKAKIGDNVLYLAHRNNVDLEGACEASLACSTCHVYVNEDFFXXXXXXXXXXXXXXXMAPFLQDNSRLGCQIILTKEMDGIELTLPKITRNFYVDGHVPKPH 649
            R+FQAT +   G  D  GP+   + VNV ++DR+  ++ V  ++GDNVL+LA R+ VDLEGACEASLACSTCHVYV+ED  D+L  P E EDDMLDMAP LQ+NSRLGCQI+LT E++G E TLPKITRNFYVDGHVPKPH
Sbjct:   43 RKFQATGSRPAGEEDAGGPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRNFYVDGHVPKPH 183
The following BLAST results are available for this feature:
BLAST of TCONS_00062317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FDX21.461e-5165.25Ferredoxin-2, mitochondrial OS=Homo sapiens GN=FDX... [more]
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