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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062271 ID=TCONS_00062271|Name=TCONS_00062271|organism=Clytia hemisphaerica|type=transcript|length=3916bpRun BLAST on NCBI protein sequence of TCONS_00062271-protein >TCONS_00062271-protein ID=TCONS_00062271-protein|Name=TCONS_00062271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1238bp MSSYVKAPSRLEGSKDEVGGLVSMKKKKDNDSGTKDSDGFARPPKLSSVLRun BLAST on NCBI transcript from alignment at scaffold_362:758149..904404- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062271 ID=TCONS_00062271|Name=TCONS_00062271|organism=Clytia hemisphaerica|type=transcript|length=146256bp|location=Sequence derived from alignment at scaffold_362:758149..904404- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:758149..904404- >TCONS_00062271 ID=TCONS_00062271|Name=TCONS_00062271|organism=Clytia hemisphaerica|type=CDS|length=74340bp|location=Sequence derived from alignment at scaffold_362:758149..904404- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062271 vs. Swiss-Prot (Human)
Match: PRP16 (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 1328.15 bits (3436), Expect = 0.000e+0 Identity = 696/1060 (65.66%), Postives = 827/1060 (78.02%), Query Frame = 2
Query: 659 SSRHTHDGSRTTPRVRYSEINTPSRTTWDDDDDTKHGGSKSSWDVPTPG---RDSYRAXXXXXXXXXXXXXXXXXXNDSAYGYGHGKSRRPDDTPRFTPTHKYNSWEGKGGRSRGHESTRSRRSPDNSPEGK-------ENEADRSRWEEEQKNLDRAWYDLDAGYDEYTNPFAQVSEDYVXXXXXXXXXXXXXXXXXXXXXXXXDNDAWENNRLLTSGVVTRTEVDDDFDESDEAKVYLLVHNIIPPFLDGRIMFTKQPEPVIPIKDPTSDMATVARKGCHSVRLHRXXXXXXXXXXXXXXXXGTKLGEIMGVXXXXX-XXXXXXXXXXXYKKGQQFSEHMKEKSEASSEFAKQKSIREQREYLPIFAARTELLXXXXXXXXXXXXGETGSGKTTQLTQYLHEDGYSKRGMIGCTQPRRVAAMSVAKRVSEEMGVELGEDVGYAIRFEDVTSETTTIKYMTDGILLRESIGTADLDNYSCIIMDEAHERSLNTDVLFGLLRDVVARRNDLKLIVTSATMDASKFAQFFGNVPIYQIPGRTFPVDVLYSKTCLDDYVDAAVKQSLQIHLMPQKGDILVFMPGQEDIEVTCDLISERLEEIEGVPPLAVLPIYSQLPSDLQAKIFEKAPDGVRKCVVATNIAETSLTVDGIRFVVDAGYCKLKVFNPKIGMDALQVYPISQANANQRSGRAGRTGPGSAFRLYTETQYRNEMLVGTVPEIQRTNLANVVLTLKSLNVDDLLEFHFMDPPPQDNILQSMYQLWTLGAIDNTGMLTKMGRKMVEFPLDPSLAKMLLVSAEMGCSDEVLTIVSMLSVPSIFSRPRGREEESDAAREKFQEPESDHLSYLHVYQQWKANNYSSTWCKEHFIHIKAMKKVREVRAQLKDIMTFLKLKIVSCSFDHDVVRKTICSAYFHQAARLKGVGEYVNCRNGMPCHLHPSSALYGMGFCPDYVVYHELVMTSREFMQCVTSVEGQWLAELGPMFFSVKESSHSRNEKRTEGVETKKMMEAEMQEASEIIKARK--EEKMSRLSTVSRALIATPGRKAIG---TPKRTPARFGL 3790
S R + +PR R + TPSR+TW+++D +S W+ P+P RDS R+ + RS + + DDTP TP++KYN W R H + R S + + E +R +WE++Q+ DR WY +D GYDE+ NP A SEDYV+++E+ L QKQKR SA+ RQ +DN+ WE NR+LTSGVV R EVD+DF+E + AKV+L+VHN++PPFLDGRI+FTKQPEPVIP+KD TSD+A +ARKG +VR HRE+KE KAQ K WELAGTKLG+IMGVKK+++ + D DY+ Q+F++HMK KSEASSEFAK+KSI EQR+YLPIFA + ELL I+RDN++V++VGETGSGKTTQLTQYLHEDGY+ GMIGCTQPRRVAAMSVAKRVSEEMG LGE+VGYAIRFED TSE T IKYMTDGILLRES+ ADLD+YS IIMDEAHERSLNTDVLFGLLR+VVARR+DLKLIVTSATMDA KFA FFGNVPI+ IPGRTFPVD+L+SKT +DYV+AAVKQSLQ+HL GDIL+FMPGQEDIEVT D I E LEE+E P LAVLPIYSQLPSDLQAKIF+KAPDGVRKC+VATNIAETSLTVDGI FV+D+GYCKLKVFNP+IGMDALQ+YPISQANANQRSGRAGRTGPG FRLYT++ Y+NE+L TVPEIQRTNLANVVL LKSL V DLL+FHFMDPPP+DN+L SMYQLW LGA+DNTG LT GR MVEFPLDP+L+KML+VS +MGCS E+L IVSMLSVP+IF RP+GREEESD REKF PESDHL+YL+VY QWK NNYS+ WC +HFIH KAM+KVREVRAQLKDIM ++ + SC D D+VRK IC+AYFHQAA+LKG+GEYVN R GMPCHLHP+S+L+GMG+ PDY+VYHELVMT++E+MQCVT+V+G+WLAELGPMF+SVK++ SR E R E ME EM A E ++AR+ +EK S L +V I TPGRK G TP+RTPARFGL
Sbjct: 188 SERSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSV----------------RGKYSDDTPLPTPSYKYNEW----ADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEEPDKAVTEDGKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQGEPMTPRRTPARFGL 1227 The following BLAST results are available for this feature:
BLAST of TCONS_00062271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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