TCONS_00062260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062260
Unique NameTCONS_00062260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062260 ID=TCONS_00062260|Name=TCONS_00062260|organism=Clytia hemisphaerica|type=transcript|length=1014bp
GATTTTTGCAAGGTCAGCATCTTTGCATAGTATAAATAGAGGAGTGGAAA
GCTTGGAGAATCATTCAAACTCAAACAGTCAACCAataatcaacaacaac
aacaacaacaaggatTTCAGCACAAAGAGTAGCAACAAAATGGAAGGCAC
ACTAAAGGTATTAATGTTGGTCATGGCCGTCGCCAATCTTTTCCATTGTT
CACCAGTCGTCGAGAAAGTCATCAAACAGAAAGAAACAGGCTCCGTCATG
CTCCCAAGTGAAGAAATCAAAGTCTTGTCCGACTTAACAAAATATTTCAG
TACTTTTACTGAAGATCTTCTCAGCTTCCGCAATGGTCACATGACGCAAA
CAGAATTGAAAGgcaaatatttgaagaaaaccAAACCTTTTCCAAAACGT
TTAATGGGTTTGGTAAATGCAATCCATTCTTATTATTTGAAGAATTTGGA
TGAAGTTGCACCACCAGTGATCACTGAAAACAAAACATCAAGCAACCAAA
CATCTGTCAGTGGCGAGAAGATGAAGTCATTATCTTGTTATGATCAATAC
TGTATTAGTGGCCTAGACTGTGTTTCTTTTACATTCAACAACTATGTATG
CCCACCCAACCCTAATGCTGTACTTTGTGAAACTGATTGGCAGTACAGAT
GCTGAGGTCCAAACATTGCAGCTTACCTACGGTAAATATGATGAGTATCa
ttctttataatttttgttGATCTGATGaacttttcttgtatttttagtAT
GTAAGGGTCAGAAGTGATTTTATTAACCATTATAATGAAACATCATACGA
CTGTAATATTCATTTATTGGATTCGTGCCACTTTTTACGGGCAATCGTAT
AATaatcgttcttataaaatttgatttttttttctttctaggaCAATTTT
GtgtacatttttttattcttgaTGTAGTTTTTTGTGTATTGTAAAATGTA
TAAACTCTCTTTTTTATATAGtaatcttgaaaaaatatatcattGCGGTG
CTAGTTTACCGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_362:530032..531347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062260 ID=TCONS_00062260|Name=TCONS_00062260|organism=Clytia hemisphaerica|type=transcript|length=1316bp|location=Sequence derived from alignment at scaffold_362:530032..531347- (Clytia hemisphaerica)
GATTTTTGCAAGGTCAGCATCTTTGCATAGTATAAATAGAGGAGTGGAAA
GCTTGGAGAATCATTCAAACTCAAACAGTCAACCAATAATCAACAACAAC
AACAACAACAAGGATTTCAGCACAAAGAGTAGCAACAAAATGGAAGGCAC
ACTAAAGGTGAGTAACATGGGGATAACTTACGACTTAGGTAGTAACCAGT
CCCGCCCATCCTCGTAACTATTCCCCAGACTTTTGGTTACATGGATTTCA
TAAGAACCAATTAAATCAAAGCCCTAAGTTCTTCTAAATTGCGTTTATAT
GTTCCAAATTCGAGTTTTGTTGTTTTTTTTGTTTTTAATTGTTTGGGTGA
TACCTTTGATAAATTAGTTATAAAAGGGTTTGCAAAGCATTTCAAAAATA
AGCATGCTGTTTATAAAGTTGATATAAAGTTAAAGTATAAAGTTTTCATC
AATTTCCAGGTATTAATGTTGGTCATGGCCGTCGCCAATCTTTTCCATTG
TTCACCAGTCGTCGAGAAAGTCATCAAACAGAAAGAAACAGGCTCCGTCA
TGCTCCCAAGTGAAGAAATCAAAGTCTTGTCCGACTTAACAAAATATTTC
AGTACTTTTACTGAAGATCTTCTCAGCTTCCGCAATGGTCACATGACGCA
AACAGAATTGAAAGGCAAATATTTGAAGAAAACCAAACCTTTTCCAAAAC
GTTTAATGGGTTTGGTAAATGCAATCCATTCTTATTATTTGAAGAATTTG
GATGAAGTTGCACCACCAGTGATCACTGAAAACAAAACATCAAGCAACCA
AACATCTGTCAGTGGCGAGAAGATGAAGTCATTATCTTGTTATGATCAAT
ACTGTATTAGTGGCCTAGACTGTGTTTCTTTTACATTCAACAACTATGTA
TGCCCACCCAACCCTAATGCTGTACTTTGTGAAACTGATTGGCAGTACAG
ATGCTGAGGTCCAAACATTGCAGCTTACCTACGGTAAATATGATGAGTAT
CATTCTTTATAATTTTTGTTGATCTGATGAACTTTTCTTGTATTTTTAGT
ATGTAAGGGTCAGAAGTGATTTTATTAACCATTATAATGAAACATCATAC
GACTGTAATATTCATTTATTGGATTCGTGCCACTTTTTACGGGCAATCGT
ATAATAATCGTTCTTATAAAATTTGATTTTTTTTTCTTTCTAGGACAATT
TTGTGTACATTTTTTTATTCTTGATGTAGTTTTTTGTGTATTGTAAAATG
TATAAACTCTCTTTTTTATATAGTAATCTTGAAAAAATATATCATTGCGG
TGCTAGTTTACCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039022XLOC_039022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062260-exon-scaffold_362-1575043694:531191..531347TCONS_00062260-exon-scaffold_362-1575043694:531191..531347Clytia hemisphaericaexon
TCONS_00062260-exon-scaffold_362-1575043694:530032..530888TCONS_00062260-exon-scaffold_362-1575043694:530032..530888Clytia hemisphaericaexon
TCONS_00062260-exon-scaffold_362-1510915933:531191..531347TCONS_00062260-exon-scaffold_362-1510915933:531191..531347Clytia hemisphaericaexon
TCONS_00062260-exon-scaffold_362-1510915933:530032..530888TCONS_00062260-exon-scaffold_362-1510915933:530032..530888Clytia hemisphaericaexon
TCONS_00062260-exon-scaffold_362-1491911889:531191..531347TCONS_00062260-exon-scaffold_362-1491911889:531191..531347Clytia hemisphaericaexon
TCONS_00062260-exon-scaffold_362-1491911889:530032..530888TCONS_00062260-exon-scaffold_362-1491911889:530032..530888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:530032..531347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.925506	0.902514	0.343331	0.503844	0.408921	0.807837	0	0.212182	0	0	0	0.0587031	10.4867	1.46604	239.85	319.618	1.93488	0.466632	0.161169	0.168652	0	0	0.173838	0	0	0.12669	0	0.128987	0.293497	0.149514
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top