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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062258 ID=TCONS_00062258|Name=TCONS_00062258|organism=Clytia hemisphaerica|type=transcript|length=1529bp
TTCGagagaaaagattttttgttcacACTTTCAAAACGGGAAAAAAAGAT
GGCAAACTTCAACAAGACTTATACTTTCATCCTCCTCGTTGCTGTTTTCG
CATGTTGCTATGGTGACAATAAATGTGTCATTTTGAATGATGTTAATGGC
TGTAGTACACCAATCAAATCTGATCAAATACCATACAGAGTTCGATTTAC
GCCTGCTTGTAACTCACATGATGCTTGCTACAGATGCGGACAAATGTACA
ACTGGACTCAAAGTGATTGTGATAATGGTTTCTTGAACAAAATGAAAGCT
GTTTGTGTCAACCAACCCGATCAAACAGCATTCAGTGTATACGCTAGCAC
CAAAGgaaaaatgaTGTCCTATCTCGAATTCTTCAAACGCATTTACGACG
GATACAAAAAAGCCACTCAAAACGGAACCAAAGCTGAAGCGCAAAGAGTC
TGGGACGAGTGTCAAAAACTCTTATCAGTATTTAGACAATGGATCAAAGC
TTCTCCAGGAGTTCCGAAATGTCTATTGGGGGCACAAGGATATTATCATG
CAGTCCGTNCCCAGGAGTTCCAAAATGTCTATTGGGGGCACAAGGATATT
ATCATGCAGTCCGTGCTTTTGGTATCTACGCTTATCGGCATAGTAATCTT
AAAGTTTTTTGTAAAGACAAATGTGCAAAGGATTTAGCTAACCCATTCTA
AAGAGAATTTATTATACTgtgtttacttgatttttacTTTAACCGTCTAA
GTGCCACGGTCCTGTGCGTCACCCTACTATATATAGCCAATGTCCgatat
accttaaaggaagaaattttggcgggaatttaatttggcggattgccaaa
aaagttttttcagagggaatttaatttggcggatggacgaaaaaactaaa
tttggcggcaatttaatttggcggtcgcttaaaaatttaaccttaagatg
gcgtcgaaacagcgaaaaaatagcaaaaacaccttaaaagagatcatatt
ttcaaaatgtttaatttggcgggaatataatttggcggatggcggaaaaa
agaaattttggcgggaacttaatttggcggattttagtcaaatccgccaa
atccgccaaattttctttccgccaaaatttcttcctttaaggtacccGAC
ATtgacacttaaagggttaacatATTTCACTACACATAACCAACTGTAAC
ATATTGTAGCATGTACCGAACTCTGCTACTTGAGAAAATTATTTCAGTGA
GGCAGCAATTTTATAACCTTTTAATTTAACGAGAATTAACTTTGTCGAAC
GGCACCGTATGTTGATTTTTTGCCTATCGATGATTGTTTCAGAGAAAAAT
CAGGGtttatttaaaaatcattaaaataattaaatttggcgtggaatttc
ttttattttttcatgaactttttttcgagagctactttaggcgtacaaac
tttcgcgagcagaaactttcgcgattttcgcgaattttggcccttttcgc
gaaagtaaatgtatttgaaaattcttaat Run BLAST on NCBI protein sequence of TCONS_00062258-protein >TCONS_00062258-protein ID=TCONS_00062258-protein|Name=TCONS_00062258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
FERKDFLFTLSKREKKMANFNKTYTFILLVAVFACCYGDNKCVILNDVNG
CSTPIKSDQIPYRVRFTPACNSHDACYRCGQMYNWTQSDCDNGFLNKMKA
VCVNQPDQTAFSVYASTKGKMMSYLEFFKRIYDGYKKATQNGTKAEAQRV
WDECQKLLSVFRQWIKASPGVPKCLLGAQGYYHAVRXQEFQNVYWGHKDI
IMQSVLLVSTLIGIVILKFFVKTNVQRI Run BLAST on NCBI transcript from alignment at scaffold_362:516474..519937- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062258 ID=TCONS_00062258|Name=TCONS_00062258|organism=Clytia hemisphaerica|type=transcript|length=3464bp|location=Sequence derived from alignment at scaffold_362:516474..519937- (Clytia hemisphaerica)
TTCGAGAGAAAAGATTTTTTGTTCACACTTTCAAAACGGGAAAAAAAGAT
GGCAAACTTCAACAAGACTTATACTTTCATCCTCCTCGTTGCTGTTTTCG
CATGTTGCTATGGTGACAATAAATGTGTCATTTTGAATGATGTTAATGGC
TGTAGTACACCAATCAAATCTGATCAAATACCATACAGAGTTCGATTTAC
GCCTGCTTGTAACTCACATGATGCTTGCTACAGATGCGTAAGTAGAAACA
TTTCGAAATCACAATTGACTCCCCCTTATTCGACTCAAAGGACCGATTAT
TATGAATACGATAATGAGAGGGTTCAAAAAGGTTTTTGTAAAATATTTAA
TTTTGATACACACTAACCTTTAAAAAACCCTGCATAAGTTTTACTTGCCA
TTTTTGATCGTTGTTTTACCTAAAACATACTACCCTAATGTTAACTTAAC
TCGAGATTTGGGTCAAGGACTCTGACCATAAGCAGAAAATTGAAGATAAA
ACATTTGCTTTAGGTTCTTTGACATTTTAACAAAAACTGACTTTCACAAG
TTGTTTTGCAAAGAATTGATTTATTTTAAATTTTTCGGAAAATTTTTCTA
AATCGATGTATCAAAGATTATGACTGTTAATGANATAAATTTTTTGGAAA
ATTTTTCTAAATCGATGTATCAAAGATTATGACTGTTAATGAGAATTAAA
AATAGGGATGAAGAATTGGGCAAAAGCCAATATTTTCAAAATTTTGAGAC
GAAGAAGCTTTTTCAAAAATTCTCTGAAAATCCATTTTTAGTTCGGGTAA
AGATACACCATCTACCGCAAAATAATTTTCAAAATGTTTATTCTGATCGC
CAAAAATAAGGTCTCAAAGCCGAAGTACTCTTCTTCAATTTATATTTTGT
ACATGTCTATAACATGCCGCAATTAGGAAACTTACTATGGTCAGAGCCCT
TAATGTATAATAAAATGCCGTTTTCCGTCGAAAAAGTGTTGACCTACTTC
GAGTATAGAACTGCAATAAATTCTTATCACCGATTTTGATTTGCTGGAAT
TTAGAAACTGTATCCAAACTGTTAAGACTAAATTCACAGAACGCTATAGC
GGAGTAACCATTGATAGAAAAAGAAACTTTTTCTATATCTTTAGGGACAA
ATGTACAACTGGACTCAAAGTGATTGTGATAATGGTTTCTTGAACAAAAT
GAAAGCTGTTTGTGTCAACCAACCCGATCAAACAGCATTCAGTGTATACG
CTAGCACCAAAGGTAAAGATTTTCAACCTTCTTGTATACCTGCTATACGT
TTAATTATTAAATCAGTCGACGCTCTCTAATTCGACATCCTACTATTCGA
TAATACCATTATTCGATAATATTGAAAGTCACCGTTTACAAGAAATGCCA
TAAACGACGCTCTCTTATTCAATGATCGAATCAAATCGAATAATAGAGCA
TCCACTGTACTTGCAACACGTAAAATCGAAACTTTAAGGCCGAGGCACGA
CCCTGTGTTTGGCTAAGATTTACATTTTTGTATGAATTATTGGATATACT
CTGTCTCAGTGACCCTGAGAGCTTTTCTATTGACTGGGAACAGATTGAAG
GAGCTAATAGGCAAATGAGGATTGAGAAATATGTTTAAATGTTATTGATT
TATGGCTAGCTCTCAAATTCTTAGTGCTTTTTACCAAACGCAAAACAACG
TTCATGTGACATTCATAACGTCTAAATAACGTTATTTGAATGTTAAAACA
ACGTTGTGTGCCAGCTGGGTCACCAATAATGAATGAGGTCTGTGTTTAGT
TTTTTCAATGGTGATTACAGGATATTTTTTTCTCAACACACCGAGGTAAG
TTTTTGGCCGATTTTTGCACTGGGTAGGGGCTCCAACGCCCACCCAGTCT
ACCTTAAGGGAACATATTTTGGAGAGCGGCGAAAATCTTAAAATATTTTA
ATTTTGGCGGGAACTTATTTTGGCGAATAGTGAATTTTTTTAATTTTGGC
GGGAACTAATTTTGGCGGATGACAGCGTAAATCTGTTCTATTTTGCCTTA
TGTTGAGCAATTTTGATGAATTTCAGGGGTTATTTAGGCAAGGGAACAAA
AAATTTAATTTGTTGGGAACTTATTTTGGCGAGTGAGCAAAATATTTAAT
TTTAGCGGGAACTAATTTTGGCGAATTTTGCCTAAATTCGCCAAATTCCC
CAAAATTAGTTCCCGCCAAAATAAGTTCCCTAAGGTATAATCTGAAAACA
CTTCAACATTTATTGCAATATGTTTTCTTTTCTTTTTCAGGAAAAATGAT
GTCCTATCTCGAATTCTTCAAACGCATTTACGACGGATACAAAAAAGCCA
CTCAAAACGGAACCAAAGCTGAAGCGCAAAGAGTCTGGGACGAGTGTCAA
AAACTCTTATCAGTATTTAGACAATGGATCAAAGCTTCTCCAGGAGTTCC
GAAATGTCTATTGGGGGCACAAGGATATTATCATGCAGTCCGTNCCCAGG
AGTTCCAAAATGTCTATTGGGGGCACAAGGATATTATCATGCAGTCCGTG
CTTTTGGTATCTACGCTTATCGGCATAGTAATCTTAAAGTTTTTTGTAAA
GACAAATGTGCAAAGGATTTAGCTAACCCATTCTAAAGAGAATTTATTAT
ACTGTGTTTACTTGATTTTTACTTTAACCGTCTAAGTGCCACGGTCCTGT
GCGTCACCCTACTATATATAGCCAATGTCCGATATACCTTAAAGGAAGAA
ATTTTGGCGGGAATTTAATTTGGCGGATTGCCAAAAAAGTTTTTTCAGAG
GGAATTTAATTTGGCGGATGGACGAAAAAACTAAATTTGGCGGCAATTTA
ATTTGGCGGTCGCTTAAAAATTTAACCTTAAGATGGCGTCGAAACAGCGA
AAAAATAGCAAAAACACCTTAAAAGAGATCATATTTTCAAAATGTTTAAT
TTGGCGGGAATATAATTTGGCGGATGGCGGAAAAAAGAAATTTTGGCGGG
AACTTAATTTGGCGGATTTTAGTCAAATCCGCCAAATCCGCCAAATTTTC
TTTCCGCCAAAATTTCTTCCTTTAAGGTACCCGACATTGACACTTAAAGG
GTTAACATATTTCACTACACATAACCAACTGTAACATATTGTAGCATGTA
CCGAACTCTGCTACTTGAGAAAATTATTTCAGTGAGGCAGCAATTTTATA
ACCTTTTAATTTAACGAGAATTAACTTTGTCGAACGGCACCGTATGTTGA
TTTTTTGCCTATCGATGATTGTTTCAGAGAAAAATCAGGGTTTATTTAAA
AATCATTAAAATAATTAAATTTGGCGTGGAATTTCTTTTATTTTTTCATG
AACTTTTTTTCGAGAGCTACTTTAGGCGTACAAACTTTCGCGAGCAGAAA
CTTTCGCGATTTTCGCGAATTTTGGCCCTTTTCGCGAAAGTAAATGTATT
TGAAAATTCTTAAT Coding sequence (CDS) from alignment at scaffold_362:516474..519937- >TCONS_00062258 ID=TCONS_00062258|Name=TCONS_00062258|organism=Clytia hemisphaerica|type=CDS|length=2061bp|location=Sequence derived from alignment at scaffold_362:516474..519937- (Clytia hemisphaerica)
GAAAAATGATGTCCTATCTCGAATTCTTCAAACGCATTTACGACGGATAC
AAAAAAGCCACTCAAAACGGAACCAAAGCTGAAGCGCAAAGAGTCTGGGA
CGAGTGTCAAAAACTCTTATCAGTATTTAGACAATGGATCAAAGCTTCTC
CAGGAGTTCCGAAATGTCTATTGGGGGCACAAGGATATTATCATGCAGTC
CGTNCCCAGGAGTTCCAAAATGTCTATTGGGGGCACAAGGATATTATCAT
GCAGTCCGTGCTTTTGGTATCTACGCTTATCGGCATAGTAATCTTAAAGT
TTTTTGTAAAGACAAATGTGCAAAGGATTTAGGGACAAATGTACAACTGG
ACTCAAAGTGATTGTGATAATGGTTTCTTGAACAAAATGAAAGCTGTTTG
TGTCAACCAACCCGATCAAACAGCATTCAGTGTATACGCTAGCACCAAAG
TTCGAGAGAAAAGATTTTTTGTTCACACTTTCAAAACGGGAAAAAAAGAT
GGCAAACTTCAACAAGACTTATACTTTCATCCTCCTCGTTGCTGTTTTCG
CATGTTGCTATGGTGACAATAAATGTGTCATTTTGAATGATGTTAATGGC
TGTAGTACACCAATCAAATCTGATCAAATACCATACAGAGTTCGATTTAC
GCCTGCTTGTAACTCACATGATGCTTGCTACAGATGCGAAAAATGATGTC
CTATCTCGAATTCTTCAAACGCATTTACGACGGATACAAAAAAGCCACTC
AAAACGGAACCAAAGCTGAAGCGCAAAGAGTCTGGGACGAGTGTCAAAAA
CTCTTATCAGTATTTAGACAATGGATCAAAGCTTCTCCAGGAGTTCCGAA
ATGTCTATTGGGGGCACAAGGATATTATCATGCAGTCCGTNCCCAGGAGT
TCCAAAATGTCTATTGGGGGCACAAGGATATTATCATGCAGTCCGTGCTT
TTGGTATCTACGCTTATCGGCATAGTAATCTTAAAGTTTTTTGTAAAGAC
AAATGTGCAAAGGATTTAGGGACAAATGTACAACTGGACTCAAAGTGATT
GTGATAATGGTTTCTTGAACAAAATGAAAGCTGTTTGTGTCAACCAACCC
GATCAAACAGCATTCAGTGTATACGCTAGCACCAAAGTTCGAGAGAAAAG
ATTTTTTGTTCACACTTTCAAAACGGGAAAAAAAGATGGCAAACTTCAAC
AAGACTTATACTTTCATCCTCCTCGTTGCTGTTTTCGCATGTTGCTATGG
TGACAATAAATGTGTCATTTTGAATGATGTTAATGGCTGTAGTACACCAA
TCAAATCTGATCAAATACCATACAGAGTTCGATTTACGCCTGCTTGTAAC
TCACATGATGCTTGCTACAGATGCGAAAAATGATGTCCTATCTCGAATTC
TTCAAACGCATTTACGACGGATACAAAAAAGCCACTCAAAACGGAACCAA
AGCTGAAGCGCAAAGAGTCTGGGACGAGTGTCAAAAACTCTTATCAGTAT
TTAGACAATGGATCAAAGCTTCTCCAGGAGTTCCGAAATGTCTATTGGGG
GCACAAGGATATTATCATGCAGTCCGTNCCCAGGAGTTCCAAAATGTCTA
TTGGGGGCACAAGGATATTATCATGCAGTCCGTGCTTTTGGTATCTACGC
TTATCGGCATAGTAATCTTAAAGTTTTTTGTAAAGACAAATGTGCAAAGG
ATTTAGGGACAAATGTACAACTGGACTCAAAGTGATTGTGATAATGGTTT
CTTGAACAAAATGAAAGCTGTTTGTGTCAACCAACCCGATCAAACAGCAT
TCAGTGTATACGCTAGCACCAAAGTTCGAGAGAAAAGATTTTTTGTTCAC
ACTTTCAAAACGGGAAAAAAAGATGGCAAACTTCAACAAGACTTATACTT
TCATCCTCCTCGTTGCTGTTTTCGCATGTTGCTATGGTGACAATAAATGT
GTCATTTTGAATGATGTTAATGGCTGTAGTACACCAATCAAATCTGATCA
AATACCATACAGAGTTCGATTTACGCCTGCTTGTAACTCACATGATGCTT
GCTACAGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062258-exon-scaffold_362-1575043694:519701..519937 | TCONS_00062258-exon-scaffold_362-1575043694:519701..519937 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1575043694:518676..518793 | TCONS_00062258-exon-scaffold_362-1575043694:518676..518793 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1575043694:516474..517647 | TCONS_00062258-exon-scaffold_362-1575043694:516474..517647 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1510915933:519701..519937 | TCONS_00062258-exon-scaffold_362-1510915933:519701..519937 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1510915933:518676..518793 | TCONS_00062258-exon-scaffold_362-1510915933:518676..518793 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1510915933:516474..517647 | TCONS_00062258-exon-scaffold_362-1510915933:516474..517647 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1491911889:519701..519937 | TCONS_00062258-exon-scaffold_362-1491911889:519701..519937 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1491911889:518676..518793 | TCONS_00062258-exon-scaffold_362-1491911889:518676..518793 | Clytia hemisphaerica | exon |
| TCONS_00062258-exon-scaffold_362-1491911889:516474..517647 | TCONS_00062258-exon-scaffold_362-1491911889:516474..517647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:516474..519937 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016090 | PLipase_A2_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0050482 | arachidonic acid secretion |
| GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0050482 |
arachidonic acid secretion |
| biological_process |
GO:0006644 |
phospholipid metabolic process |
| molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
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