TCONS_00062251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062251
Unique NameTCONS_00062251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062251 ID=TCONS_00062251|Name=TCONS_00062251|organism=Clytia hemisphaerica|type=transcript|length=881bp
caataataCAATGATATTATGTAATGATTATATATTATGAATCGGTAATT
CTTTTCGACATTTTCAAGAGTTTTTAATTTATATTCCATACGTCCCCTCT
AAATGTTTCTTCAGAAGTCTAATTGGTTAGAAGTGAATCAAGTCTTTCGC
GTTATTTCtactttcaatttcaacaattctgTTCCAACATTTTTGACGTC
ACTGTTACCGTAGCTAGAGTGGCGGCGTTGGTTGGGAACGCTCGCAGAAG
CGTTGCGTTCAGACCACGGAACAAGACACGATAGCCTTCCTCGTGTATGC
TTTTCAAGGTACAGTCAATGACACCTTTGTATTTGGTACGTCCCATGCCG
TCCATTTGTTGCCGTGTCTTGATCACATCTGTCGGGTAGGCAATCAGCCA
ACAAATACTACCAGCCGTGCCTCCACAGAGCAGGAGTTTCCAGACGTTAA
CACATTCTTCCGTGACCGCATCCGTCTTTTTACATAAGAAATCATAAGAT
GCGAAATAAATTCCGAACGAGTTTAAGCAACGTACTAAGGTTAAACTCAT
GCCACGGAAAAGTCCTTTAGCACCACCCTCGTGTTTATAAATCTTCTTAA
GACAGTCTGTAGGAGAGTCATAGAAATATTTATGGTCGGCTGCCGTCAGT
TTGTTGTGTTTAAGTACTCCTTCTCCTTGCATCTGGAAACGAATTTTAAC
GAGCTCCATTGGGGATGCTATAACGCTTTGCACTCCGCCTGCTACAGCAC
CAGCAAAAAATTGTGATTTAATGTCTCGATTACCAAGGCCTTTTAATACG
TTGCCATGGATACCAAATACAATAGCGTTGATGCCGATTTGTCCGTATAA
AGGAGATACCATGCCTTTGTACAAGCCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_362:404936..405873-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062251 ID=TCONS_00062251|Name=TCONS_00062251|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at scaffold_362:404936..405873- (Clytia hemisphaerica)
CAATAATACAATGATATTATGTAATGATTATATATTATGAATCGGTAATT
CTTTTCGACATTTTCAAGAGTTTTTAATTTATATTCCATACGTCCCCTCT
AAATGTTTCTTCAGAAGTCTAATTGGTTAGAAGTGAATCAAGTCTTTCGC
GTTATTTCTACTTTCAATTTCAACAATTCTGTTCCAACATTTTTGACGTC
ACTGTTACCGTAGCTAGAGTGGCGGCGTTGGTTGGGAACGCTCGCAGAAG
CGTTGCGTTCAGACCACGGAACAAGACACGATAGCCTTCCTCGTGTATGC
TTTTCAAGGTACAGTCAATGACACCTTTGTATTTGGTACGTCCCATGCCG
TCCATTTGTTGCCGTGTCTTGATCACATCTGTCGGGTAGGCAATCAGCCA
ACAAATACTACCAGCCGTGCCTCCACAGAGCAGGAGTTTCCAGACGTTAA
CACATTCTTCCGTGACCGCATCCGTCTTTTTACATAAGAAATCATAAGAT
GCGAAATAAATTCCGAAAGAGTTTAAGCNCGTCTTTTTACATAAGAAATC
ATAAGATGCGAAATAAATTCCGAACGAGTTTAAGCAACGTACTAAGGTTA
AACTCATGCCACGGAAAAGTCCTTTAGCACCACCCTCGTGTTTATAAATC
TTCTTAAGACAGTCTGTAGGAGAGTCATAGAAATATTTATGGTCGGCTGC
CGTCAGTTTGTTGTGTTTAAGTACTCCTTCTCCTTGCATCTGGAAACGAA
TTTTAACGAGCTCCATTGGGGATGCTATAACGCTTTGCACTCCGCCTGCT
ACAGCACCAGCAAAAAATTGTGATTTAATGTCTCGATTACCAAGGCCTTT
TAATACGTTGCCATGGATACCAAATACAATAGCGTTGATGCCGATTTGTC
CGTATAAAGGAGATACCATGCCTTTGTACAAGCCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039016XLOC_039016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062251-exon-scaffold_362-1575043694:405391..405873TCONS_00062251-exon-scaffold_362-1575043694:405391..405873Clytia hemisphaericaexon
TCONS_00062251-exon-scaffold_362-1575043694:404936..405333TCONS_00062251-exon-scaffold_362-1575043694:404936..405333Clytia hemisphaericaexon
TCONS_00062251-exon-scaffold_362-1510915933:405391..405873TCONS_00062251-exon-scaffold_362-1510915933:405391..405873Clytia hemisphaericaexon
TCONS_00062251-exon-scaffold_362-1510915933:404936..405333TCONS_00062251-exon-scaffold_362-1510915933:404936..405333Clytia hemisphaericaexon
TCONS_00062251-exon-scaffold_362-1491911889:405391..405873TCONS_00062251-exon-scaffold_362-1491911889:405391..405873Clytia hemisphaericaexon
TCONS_00062251-exon-scaffold_362-1491911889:404936..405333TCONS_00062251-exon-scaffold_362-1491911889:404936..405333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:404936..405873 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	3.09467	4.11097	18.1346	9.98895	9.95866	2.46839	0	0	27.021	18.7091	0	0	172.203	177.323	63.2415	64.9368	381.563	267.618	167.935	132.641	51.3345	46.7838
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
Blast
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BLAST of TCONS_00062251 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.656e-58
Identity = 103/217 (47.47%), Postives = 133/217 (61.29%), Query Frame = -2 
Query:  233 FGLYKGMVSPLYGQIGINAIVFGIHGNVLKGLGNRDIKSQFFAGAVAGGVQSVIASPMELVKIRFQMQGEGVLKHNKLTAADHKYFYDSPTDCLKKIYKHEGGAKGLFRGMSLTLVRCLNSFGIYFASYDFLCKKTDAVTEECVNVWKLLLCGGTAGSICWLIAYPTDVIKTRQQMDGM-GRTKYKGVIDCTLKSIHEEGYRVLFRGLNATLLRAFP 880
             GLYKG+ SPL G   INA+VFG+ GN L+ LG+    +QF AGA AG +Q VI  PMEL K R Q+Q  G  +            Y    DCL +IY HE G +G+ RGM  TL+R   SFG+YF +YD L +       + + V KLLL GGT+G + WL  YP DV+K+R Q DG+ G  +Y+G++DC  +S   EG+RV  RGL +TLLRAFP
Sbjct:   56 LGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGPART-----------YKGSLDCLAQIYGHE-GLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCEPGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFP 260
The following BLAST results are available for this feature:
BLAST of TCONS_00062251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL1.656e-5847.47Mitochondrial basic amino acids transporter OS=Hom... [more]
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