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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062245 ID=TCONS_00062245|Name=TCONS_00062245|organism=Clytia hemisphaerica|type=transcript|length=319bp
AAGAATTCAAAAAAGACTTTATACCTATCGTAAAGATCGTGGTAGTGACA
AATGCCCaccatttgaaaacattttttggaccAAGCTTACAATTCTTTTG
TGAAACATTTTCCGTTGAATTACATTTGGCTTGAACGCAAAACTTTGTAA
CGTTACCAAACAAATTAACAATCTCAGTGTTATTTGACTGTGTTTCGTTA
ATTATTTTAGTATTTTGGCAAAGCTGGTTGCACATTTGATTGTAACTTGT
TGGAGGTTGTGGAACATGAAAATAACATTCTTccacaaaaaagaaaattg
tcgTCGATGTGAAAATCAG Run BLAST on NCBI transcript from alignment at scaffold_362:338183..342461- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062245 ID=TCONS_00062245|Name=TCONS_00062245|organism=Clytia hemisphaerica|type=transcript|length=4279bp|location=Sequence derived from alignment at scaffold_362:338183..342461- (Clytia hemisphaerica)
AAGAATTCAAAAAAGACTTTATACCTATCGTAAAGATCGTGGTAGTGACA
AATGCCCACCATTTGAAAACATTTTTTGGACCAAGCTTACAATTCTTTTG
TGAAACATTTTCCGTTGAATTACATTTGACTTGAACGCAAAACTTTGTAA
CGTTACCAAACAAATTAACGATTTCAGTGTTATTTGACTGTGTTTCGTTA
ATTATTTTAGTATTTTGGCAAAGCTGGTTGCACATTTGAGTGTAACTTGT
TGGAGGTTGTAGAACATGAAAATAACATTCTTCCACAAAAAAGAAAATTG
TCGTCGATGTGAAAATCAGGATCGCTAAAAAGCCAACTTGTCTCAGAAAC
CGTTTGACATTATGGAAGATCTCCTTTTTGAAATCACATTTTGCTTCAGT
GACATTTTCAATGATCATCTTCCGAAATTTATTTTCAAACTTTTCTACAA
ATGATTCTATGCCATACACTTAAAGAAATCAGTTTAAAAGTTTACAGGTT
TTGTGGTCTCTGAATAGAAAATGTTGTTATTTGATGTTCGATCCATAAAT
TCCATCAAAGTTAATACCGCTATCAATACTCATTCATTCCCGATGAATCG
AATAAATCATGATCGGGACAAAAATGATCAAAAGTTAGATTCAGTTGTTT
TCCTTTGAAATAGGATATAGGATTATTGATAAAAAGAAAAACGTTTTTTG
TTAAACGTTGATATCTACAGAAAGAATTGGGCTTTTCCAGAAAAAAACCG
TATACCCCCTGTTGAGGAGGTCAATTTCCGTTCCAATGGGGTAAGGTTTG
ATATGTGGCGGAATTCCATAGGGAGATATAAAAATCTGTCAAAAATAACT
GGAATTCTATGGGGGTAGGATTTTAAATCCTACTAAAATTCAGAATTCCA
GAGGGTTACATCATTTCCAGCCACATAGGGATGGACCTCCTCAACATAGG
GGGTATACGGTTTTTTTCTGGAAAAGCCCATTTCACAACCTAAAATTATT
TTTCAAACCCAGCAGTAACTTAAAAAAAGAAAGGACAAGAAAAAATAAAT
CATTCTTCTCAGATCAGATTCACTCAATAATTATCTGGAAAAAAACTTTT
TCTCAGACTTCACATACTGAAGAAAGAATCCAAAATATCTGAACTAACTT
TTTATACGTCGCACCATGGCTCAAAAATAATTAAATTGAAAATCAGGCTA
TTTTTCTTACAAATGATATTGTGTAAAGAAAATATATAAATAACCTTTAA
ACTAATTATTGATGAGATATTTAAACCTAATTTCCAGGAATTTTCAATTA
GTTATCATTTTATGGTCTAAGAATTTCAAATTAGTTTTAAACCTCCTCAG
TAAAAAAAAAAAAAAGGGAAAAAATCCCATCCTAAGTTTTAAAAATATCC
TTTAACGTTCAATTAAAGGGAGGGTCCAAAATAAAAAGGGGGCTGGAATT
CTTTGAGGTCTGTTTGATAAATAGTTTTGAAATTCTAAAATCTGTGAAAT
CAATTAAAGAGAGAAGAATGTCAAAAAAATTCCCACAAAGCTACTAAATA
CCCATACCTTTTGCAAAAACTTTCCGGTTTTATAGAAAATAATGAGACAA
CTTTGAGATCTTGAACACACAGCTTTCTCACAGACTCACTGGAAGCCCTT
CCCACTGGAAAAATTGACCAAAATATTGTCCCCAATGGAAAATTATACAC
TAATTTTTGTCCCCACTGAAAATAATCAAATAAACCAATCCTCACTGCAA
AATATTATGCTATTTTCACATTCCCACTGAATTTTCTGACAAAAGACTTT
TATATCCCCGGTCATAAAAAAATGGGAATCTCAATCCCCATTGAGTTTCA
GTCCGTTATTGTGAAAATAACGGCTGAAAAAATCCTACCGGGTCTGTGAG
AAGGGGGTGTTTGAACAGGTTAAATCTAAAAAAAGCGAAACAATGGTGCT
CACAGTAACATAAAGGCTAATCAAAGAATGGTCACCTCTGACTTTGAGGA
CAACAGGAAATACAAATAAGATGAAATAGGTATATCATAATTGTTGGATT
AAGATTAAAAGGATTAAAAGATGTGGTTAAAATCTGAAAAATAAGAAAAT
AATCATCTAAATTTGATTTCTGTTACGCTTCGTTTCTCCTTCAAAGAAGG
ATTAACGTAATCCAGCACCAATTCCACGATACGAAAAGACATGTACAGGA
CCCACGCCACCGGAGGGGGGGGCACAGGGCCATGGCCCCCACTTTTTTGC
AAAGTAAAAGATTTTGGTTGCGCCTCTTTAGACTCTATATTCATTGCCCC
CCACTTTCAAATTCATAGCGTGGGACCTGATGTACAAAAAAAGTGTTGCG
TCGCTCATCTCAATTAACAACTATATAATCACAGGTAATGTTTTGGAGTA
ATAATCAAACTCAGTCTGATATATTTCGACAGCACCTACGTCTTTGCGAT
TAAGAATTTTCAATGCCACCTAGGGTACCACCTATGACATAGCAATTACC
TTTCAAACATACCAATCTTTTTGCTTGTTTATTAAACGTTTGTACAACAA
AAAGGCGGTTTTCGTCTAACAGGCTTTTCTATTAAGCCGATAAAAGGCGA
TAAGAGGCTGCTAAAAATGATTGATATAGTGAAAATGAGGTTAAATATTA
GTTGTGGGCATATCAGATTTCGGCTAGTTGATGTTGATGTCATTCGAGCA
TGACAGACTTGAACCCAAAATCCTTTTTCATAAAGCTTTCAACAAAAGTC
AATAAAGTGTTGATGAGCAAATACAGTTAACCAACCAGTCAGATTTTTAT
GTTTGAATCAAATCAAACAAAAAGGTTAGTTCATTCTGAATCTATATCCA
TCTTACTGGTAAATTTATTTTCATCTCAAGGTCAAGAGATTATGGAGTTA
TCAATTTGTTCCACATAACTGTCATTTCCATCAATGTCCTTTTTGTTTTC
CTTCGTCCCCAAATCAGTTTCTAAAGATCGTATAAAATCAATAATTGATC
CCAACAATGAGAAAGTCCAATAGAAAAATGCTACGTCCAGTGAANATCGT
ATAAAATCAATAATTGATCCCAACAATGAGAAAGTCCAATAGAAAAATGC
AACGTCCAGTGAAGTAAAAATAACTAGTTGTACCATTGAGAGTTGGTATA
AATAAGTGGTGTCTGGATAAACATCGCCGAAGCCTATAGTCAACATCGTG
ACACAAACGTAATAGATTATCTCAAAGAAGCTGCTTTCCTGCAAAGTTGT
CATTTTGTAGAAAACAGAATGAAGCAATATAGTTGATATTGTCAAATAAA
TTTGAACAGCTGCCACCTTGCGTTTAAGCCATACAATTTTTTGGCGTTTC
AAGCAAGCGTTTTCAAAGCATACGATTAAATATTTGATTGTGTTGTTGAT
AGCTTTACCACAAAACAAAACATTGGCAGAAGCCATCGGAATACCGATAA
TTGCCATCACTATTGTTAAAGCTCTGCCAAGCGTAGATTTTGCCACGGTT
CTGCCATAACCTAGAATAGGAAAATTAATGCAATGGATTAGATTATATTT
TCAAAGATACCATAAAACAATAAACAGCGAATTTAAGGTTCAATCTAAGG
TGCATACGAAATAGCACTCCTTCGTTTCAGAGATGATGGGAGCCCCACCC
TACTTAAACTTTTGACCAAAATTTCGTCCCTGGTGGAAAAATACCCTACA
ATAATTTCAATCTCAATGAGATACTGACTATCTTTTCATCCTCATTGAAA
TTCGATGGACATAAGTGTTCCCGTTTCATATCAGACACATATTTCATATC
AGGGCAGTGTCTGCCAATTGTTATATTGTGCTCGATATAAGCAAAAATGG
CCAATCTTGCTCCACATACACGTCAATCCAACGTGAAAAAGTTTGTGAAT
TAAAATTGCATAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACC
TTTGAAGATGATAAAGTTATCTAGAACAACTTACCTATCGTAAAAATTGT
TGTCACGACAAATCCCCACCATTTGAAAACATTTTTTGGACCAAGCTTGC
AATTTCTTTGTGAAACATGTTCCTCTAAATTACATTTGGCTTGAACGCAA
AACTTTGTAACGTTACCAAACAAATTAACAATCTCAGTGTTATTTGACTG
TGTTTCGTTAATTATTTTAGTATTTTGGCAAAGCTGGTTGCACATTTGAT
TGTAACTTGTTGGAGGTTGTGGAACATGAAAATAACATTCTTCCACAAAA
AAGAAAATTGTCGTCGATGTGAAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062245-exon-scaffold_362-1575043694:342339..342461 | TCONS_00062245-exon-scaffold_362-1575043694:342339..342461 | Clytia hemisphaerica | exon |
| TCONS_00062245-exon-scaffold_362-1575043694:338183..338378 | TCONS_00062245-exon-scaffold_362-1575043694:338183..338378 | Clytia hemisphaerica | exon |
| TCONS_00062245-exon-scaffold_362-1510915933:342339..342461 | TCONS_00062245-exon-scaffold_362-1510915933:342339..342461 | Clytia hemisphaerica | exon |
| TCONS_00062245-exon-scaffold_362-1510915933:338183..338378 | TCONS_00062245-exon-scaffold_362-1510915933:338183..338378 | Clytia hemisphaerica | exon |
| TCONS_00062245-exon-scaffold_362-1491911889:342339..342461 | TCONS_00062245-exon-scaffold_362-1491911889:342339..342461 | Clytia hemisphaerica | exon |
| TCONS_00062245-exon-scaffold_362-1491911889:338183..338378 | TCONS_00062245-exon-scaffold_362-1491911889:338183..338378 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:338183..342461 - |
Blast
The following BLAST results are available for this feature:
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