TCONS_00062227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062227
Unique NameTCONS_00062227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062227 ID=TCONS_00062227|Name=TCONS_00062227|organism=Clytia hemisphaerica|type=transcript|length=1782bp
ATTTtacaccaaaaaaagttaaggctaaatttgaacaaaattggTGGTTT
TAGCCTTAattgaattttttgtaaatgGCCAATTTTTGAAGAATGGAACA
GGATGACTTAAAGTCGCATCACTGGTTGATCGATTGTTAAGAAAGAAGAG
TTATTCAAGTCTTTTACTGTTGACAGTAGAAGGATAATAAANTACCGACA
TCGAGAGAAAAAGATTTATAGTGacttattgttttttttgctattttgat
aAATGTTCCAAATAGAGGGCACAGCCTCTTAGGagatgggaacatataaa
tcaATGTTTTTATGGATATTGCCAATAGCCTTTATTATTGTAACCTTGCC
ATATAATACGCTGTCACTACCAGTTTCACCCGTCCCACCGCTATTGAACA
AATTGTTAAAAGATCAGAATGTAACACTTGGTTTCATCCTCAAAGGTCTT
CAAGGTCCACCTGGACATGATGGTAACCCAGGTATGGCTGGAAACCCTGG
TTCACCTGGTATGCCTGGTGAGCCAGGTCTTCAAGGTGCACCTGGTATCC
CAGGGGGTGCTGGATTCTTAGGACCTCCAGGTTCTCCTGGTTTACCTGGT
ATGGATGGTCTCCCTGGTCCTGGTGGTCTCCCTGGATCCCCTGGATGGCC
AGGAGGTAGTGGTGAACCTGGTATTCCTGGTCCACCTGGTCCCCCTGGTA
GAGATGGAAATGCTGGTGCAACACCTATCAGATATAACGGTACAGTCAAA
TGCGAAGAAGACACTGCATGGTTACGTTGCAACGAATATAAACATATTTC
CATCATCTCAGCTTTCTGGGGTCGACGAAACTTCGGTTTATGTACAGAAC
ACACAGGAAACTTGGTGGCCAACAAATACTGCCCAACAACTCCATTGTTT
TTGACCAAAGTCAAGGATGCTTGTGAAGGAACGACCATGTGTGAGATCAG
ATGCACCAAATTCTTTTTCCACGATCAAACGTGTTTGGATGTATACAAAT
ATCTAGAGGTGTATTATAAATGTATTGAAATTATCAATGGTCACGAGGTC
GTGAATGAGGACAATCTATTGAACGCCAATTTCCTTGGATAAATAAATAG
ACTATGGGGGATGTTTGTTTACCACTTACATAAACTTCCAATTCgaaaat
gttctttttattttctttaaaggagCATGGAGGGATATGGGGGTGGGCGA
TTCTCCCCTGAATTGTACAGTAACACACAGAAGTAAAAAGAAACTATTTT
TGACACTTGTTAGATGAGTGGTTTTTATTTTGCGAAAATATTACTATTTT
TAACAAAATGGGTTTATAATCGACTTGTATGAGATacaattatatattat
ttttgtaGACAATACCTTATTTTTATACACAACCGTCATCAAGTCCCACC
ATGAGACCTTTATATccaaacaagactagttttggGGCTAAAGCCAAAGG
AAGGATTCCCAAATTCGTTAACCAGAAAGGCTTTTGTATAGTAATACCAT
GAATTACAGTCATGGGTATAAAGGTCTGTTCCCACTATTCATATTGTATT
ATCAGCAATAAAATATTTGTAGTAAATGTAGTTATAGTTTTATCAAGCAA
AATTATATATAGTACCTTAACAGCCCATTGAAGCCCATTTTTCATCGTGG
ACCAGGTCAATAATGTCACCTAATGTCCTGTTGTCCGCCACCTATAAATT
Accaggaaaatttatttttcattgttatttttatattataatttttcctc
tttttgacgtCACTCTTCATCTAGAGAGTGTN
Run BLAST on NCBI

protein sequence of TCONS_00062227-protein

>TCONS_00062227-protein ID=TCONS_00062227-protein|Name=TCONS_00062227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MGTYKSMFLWILPIAFIIVTLPYNTLSLPVSPVPPLLNKLLKDQNVTLGF
ILKGLQGPPGHDGNPGMAGNPGSPGMPGEPGLQGAPGIPGGAGFLGPPGS
PGLPGMDGLPGPGGLPGSPGWPGGSGEPGIPGPPGPPGRDGNAGATPIRY
NGTVKCEEDTAWLRCNEYKHISIISAFWGRRNFGLCTEHTGNLVANKYCP
TTPLFLTKVKDACEGTTMCEIRCTKFFFHDQTCLDVYKYLEVYYKCIEII
NGHEVVNEDNLLNANFLG
Run BLAST on NCBI

transcript from alignment at scaffold_362:204304..206603-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062227 ID=TCONS_00062227|Name=TCONS_00062227|organism=Clytia hemisphaerica|type=transcript|length=2300bp|location=Sequence derived from alignment at scaffold_362:204304..206603- (Clytia hemisphaerica)
ATTTTACACCAAAAAAAGTTAAGGCTAAATTTGAACAAAATTGGTGGTTT
TAGCCTTAATTGAATTTTTTGTAAATGGCCAATTTTTGAAGAATGGAACA
GGATGACTTAAAGTCGCATCACTGGTTGATCGATTGTTAAGAAAGAAGAG
TTATTCAAGTCTTTTACTGTTGACAGTAGAAGGATAATAAAATATCGCCA
TCGAGAGAAAAAGATTTATAGTGACTTATTGTTTTTTGGCTATTTTGATA
AATGTTCCAAACNTACCGACATCGAGAGAAAAAGATTTATAGTGACTTAT
TGTTTTTTTTGCTATTTTGATAAATGTTCCAAATAGAGGGCACAGCCTCT
TAGGAGATGGGAACATATAAATCAATGTTTTTATGGATATTGCCAATAGC
CTTTATTATTGTAACCTTGCCATATAATACGGTACGTAAGGTTGGTTTGC
TAAATTAACGCCAATCATGTAGATTTGGAAGGATCTTTATCTTATACGAT
ACTGCGAAGCATGTATTTGAAGTAGCAATTTCCTTTCATTGACGAGAGCT
TTTCTTTAGAAAAATATTTATGTCCAAGTTAACACAAATTTGTTAATTAA
AAGTTCATTTTGAATGAATTAGTTGAAAAGAATCATGTTTGATATCCGTT
TCTGTTCTCCTATTTCAGCTGTCACTACCAGTTTCACCCGTCCCACCGCT
ATTGAACAAATTGTTAAAAGATCAGAATGTAACACTTGGTTTCATCCTCA
AAGGTCTTCAAGGTCCACCTGGACATGATGGTAACCCAGGTATGGCTGGA
AACCCTGGTTCACCTGGTATGCCTGGTGAGCCAGGTCTTCAAGGTGCACC
TGGTATCCCAGGGGGTGCTGGATTCTTAGGACCTCCAGGTTCTCCTGGTT
TACCTGGTATGGATGGTCTCCCTGGTCCTGGTGGTCTCCCTGGATCCCCT
GGATGGCCAGGAGGTAGTGGTGAACCTGGTATTCCTGGTCCACCTGGTCC
CCCTGGTAGAGATGGAAATGCTGGTGCAACACCTATCAGATATGTAAGTA
TATTTCACACTTCTTAAATCATCACATCATTATTGAATTTCCTTGATCAC
ATTGAATGAAGTCTAACAATGTGTCTTGCCATATGATCAAATATTATTTG
GTATAGATCTGTGCGCGTCTATAAAATAAAAAAATATTGTTCTAGACTTA
CATGGATCATCATAAGCAAATAATAACAAATTTCTTGATTTGTTTTTTTG
CAGAACGGTACAGTCAAATGCGAAGAAGACACTGCATGGTTACGTTGCAA
CGAATATAAACATATTTCCATCATCTCAGCTTTCTGGGGTCGACGAAACT
TCGGTTTATGTACAGAACACACAGGAAACTTGGTGGCCAACAAATACTGC
CCAACAACTCCATTGTTTTTGACCAAAGTCAAGGATGCTTGTGAAGGAAC
GACCATGTGTGAGATCAGATGCACCAAATTCTTTTTCCACGATCAAACGT
GTTTGGATGTATACAAATATCTAGAGGTGTATTATAAATGTATTGAAATT
ATCAATGGTCACGAGGTCGTGAATGAGGACAATCTATTGAACGCCAATTT
CCTTGGATAAATAAATAGACTATGGGGGATGTTTGTTTACCACTTACATA
AACTTCCAATTCGAAAATGTTCTTTTTATTTTCTTTAAAGGAGCATGGAG
GGATATGGGGGTGGGCGATTCTCCCCTGAATTGTACAGTAACACACAGAA
GTAAAAAGAAACTATTTTTGACACTTGTTAGATGAGTGGTTTTTATTTTG
CGAAAATATTACTATTTTTAACAAAATGGGTTTATAATCGACTTGTATGA
GATACAATTATATATTATTTTTGTAGACAATACCTTATTTTTATACACAA
CCGTCATCAAGTCCCACCATGAGACCTTTATATCCAAACAAGACTAGTTT
TGGGGCTAAAGCCAAAGGAAGGATTCCCAAATTCGTTAACCAGAAAGGCT
TTTGTATAGTAATACCATGAATTACAGTCATGGGTATAAAGGTCTGTTCC
CACTATTCATATTGTATTATCAGCAATAAAATATTTGTAGTAAATGTAGT
TATAGTTTTATCAAGCAAAATTATATATAGTACCTTAACAGCCCATTGAA
GCCCATTTTTCATCGTGGACCAGGTCAATAATGTCACCTAATGTCCTGTT
GTCCGCCACCTATAAATTACCAGGAAAATTTATTTTTCATTGTTATTTTT
ATATTATAATTTTTCCTCTTTTTGACGTCACTCTTCATCTAGAGAGTGTN

Coding sequence (CDS) from alignment at scaffold_362:204304..206603-

>TCONS_00062227 ID=TCONS_00062227|Name=TCONS_00062227|organism=Clytia hemisphaerica|type=CDS|length=2421bp|location=Sequence derived from alignment at scaffold_362:204304..206603- (Clytia hemisphaerica)
AACGGTACAGTCAAATGCGAAGAAGACACTGCATGGTTACGTTGCAACGA
ATATAAACATATTTCCATCATCTCAGCTTTCTGGGGTCGACGAAACTTCG
GTTTATGTACAGAACACACAGGAAACTTGGTGGCCAACAAATACTGCCCA
ACAACTCCATTGTTTTTGACCAAAGTCAAGGATGCTTGTGAAGGAACGAC
CATGTGTGAGATCAGATGCACCAAATTCTTTTTCCACGATCAAACGTGTT
TGGATGTATACAAATATCTAGAGGTGTATTATAAATGTATTGAAATTATC
AATGGTCACGAGGTCGTGAATGAGGACAATCTATTGAACGCCAATTTCCT
TGGATAACTGTCACTACCAGTTTCACCCGTCCCACCGCTATTGAACAAAT
TGTTAAAAGATCAGAATGTAACACTTGGTTTCATCCTCAAAGGTCTTCAA
GGTCCACCTGGACATGATGGTAACCCAGGTATGGCTGGAAACCCTGGTTC
ACCTGGTATGCCTGGTGAGCCAGGTCTTCAAGGTGCACCTGGTATCCCAG
GGGGTGCTGGATTCTTAGGACCTCCAGGTTCTCCTGGTTTACCTGGTATG
GATGGTCTCCCTGGTCCTGGTGGTCTCCCTGGATCCCCTGGATGGCCAGG
AGGTAGTGGTGAACCTGGTATTCCTGGTCCACCTGGTCCCCCTGGTAGAG
ATGGAAATGCTGGTGCAACACCTATCAGATATATGGGAACATATAAATCA
ATGTTTTTATGGATATTGCCAATAGCCTTTATTATTGTAACCTTGCCATA
TAATACGAACGGTACAGTCAAATGCGAAGAAGACACTGCATGGTTACGTT
GCAACGAATATAAACATATTTCCATCATCTCAGCTTTCTGGGGTCGACGA
AACTTCGGTTTATGTACAGAACACACAGGAAACTTGGTGGCCAACAAATA
CTGCCCAACAACTCCATTGTTTTTGACCAAAGTCAAGGATGCTTGTGAAG
GAACGACCATGTGTGAGATCAGATGCACCAAATTCTTTTTCCACGATCAA
ACGTGTTTGGATGTATACAAATATCTAGAGGTGTATTATAAATGTATTGA
AATTATCAATGGTCACGAGGTCGTGAATGAGGACAATCTATTGAACGCCA
ATTTCCTTGGATAACTGTCACTACCAGTTTCACCCGTCCCACCGCTATTG
AACAAATTGTTAAAAGATCAGAATGTAACACTTGGTTTCATCCTCAAAGG
TCTTCAAGGTCCACCTGGACATGATGGTAACCCAGGTATGGCTGGAAACC
CTGGTTCACCTGGTATGCCTGGTGAGCCAGGTCTTCAAGGTGCACCTGGT
ATCCCAGGGGGTGCTGGATTCTTAGGACCTCCAGGTTCTCCTGGTTTACC
TGGTATGGATGGTCTCCCTGGTCCTGGTGGTCTCCCTGGATCCCCTGGAT
GGCCAGGAGGTAGTGGTGAACCTGGTATTCCTGGTCCACCTGGTCCCCCT
GGTAGAGATGGAAATGCTGGTGCAACACCTATCAGATATATGGGAACATA
TAAATCAATGTTTTTATGGATATTGCCAATAGCCTTTATTATTGTAACCT
TGCCATATAATACGAACGGTACAGTCAAATGCGAAGAAGACACTGCATGG
TTACGTTGCAACGAATATAAACATATTTCCATCATCTCAGCTTTCTGGGG
TCGACGAAACTTCGGTTTATGTACAGAACACACAGGAAACTTGGTGGCCA
ACAAATACTGCCCAACAACTCCATTGTTTTTGACCAAAGTCAAGGATGCT
TGTGAAGGAACGACCATGTGTGAGATCAGATGCACCAAATTCTTTTTCCA
CGATCAAACGTGTTTGGATGTATACAAATATCTAGAGGTGTATTATAAAT
GTATTGAAATTATCAATGGTCACGAGGTCGTGAATGAGGACAATCTATTG
AACGCCAATTTCCTTGGATAACTGTCACTACCAGTTTCACCCGTCCCACC
GCTATTGAACAAATTGTTAAAAGATCAGAATGTAACACTTGGTTTCATCC
TCAAAGGTCTTCAAGGTCCACCTGGACATGATGGTAACCCAGGTATGGCT
GGAAACCCTGGTTCACCTGGTATGCCTGGTGAGCCAGGTCTTCAAGGTGC
ACCTGGTATCCCAGGGGGTGCTGGATTCTTAGGACCTCCAGGTTCTCCTG
GTTTACCTGGTATGGATGGTCTCCCTGGTCCTGGTGGTCTCCCTGGATCC
CCTGGATGGCCAGGAGGTAGTGGTGAACCTGGTATTCCTGGTCCACCTGG
TCCCCCTGGTAGAGATGGAAATGCTGGTGCAACACCTATCAGATATATGG
GAACATATAAATCAATGTTTTTATGGATATTGCCAATAGCCTTTATTATT
GTAACCTTGCCATATAATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039009XLOC_039009Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062227-proteinTCONS_00062227-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062227-exon-scaffold_362-1575043694:206413..206603TCONS_00062227-exon-scaffold_362-1575043694:206413..206603Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1575043694:206173..206341TCONS_00062227-exon-scaffold_362-1575043694:206173..206341Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1575043694:205561..205935TCONS_00062227-exon-scaffold_362-1575043694:205561..205935Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1575043694:204304..205350TCONS_00062227-exon-scaffold_362-1575043694:204304..205350Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1510915933:206413..206603TCONS_00062227-exon-scaffold_362-1510915933:206413..206603Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1510915933:206173..206341TCONS_00062227-exon-scaffold_362-1510915933:206173..206341Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1510915933:205561..205935TCONS_00062227-exon-scaffold_362-1510915933:205561..205935Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1510915933:204304..205350TCONS_00062227-exon-scaffold_362-1510915933:204304..205350Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1491911889:206413..206603TCONS_00062227-exon-scaffold_362-1491911889:206413..206603Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1491911889:206173..206341TCONS_00062227-exon-scaffold_362-1491911889:206173..206341Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1491911889:205561..205935TCONS_00062227-exon-scaffold_362-1491911889:205561..205935Clytia hemisphaericaexon
TCONS_00062227-exon-scaffold_362-1491911889:204304..205350TCONS_00062227-exon-scaffold_362-1491911889:204304..205350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:204304..206603 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0313237	0.0481884	0.416115	0.634398	2.52469	3.18747	170.694	175.674	51.112	32.7862	132.983	127.92	179.12	135.75	115.492	287.739	188.109	171.65	0	0.400983	127.745	122.234	82.095	88.9189	94.5463	108.225	18.3552	5.55282	0.308729	0.379429
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000922Lectin_gal-bd_dom
IPR008160Collagen
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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