TCONS_00062226 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062226
Unique Name	TCONS_00062226
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2547

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_362:186911..189526-

transcript sequence

>TCONS_00062226 ID=TCONS_00062226|Name=TCONS_00062226|organism=Clytia hemisphaerica|type=transcript|length=2547bp
AAAATGGACTTATATAATTAATTGAATTCTGACAGAAAGGTGATTGGTTA
TAAACCgtttatgaaaatgaaaatataaaatgaaaatatataaaaaaaaa
aaatctctacaTAAAATCTGTGTTAAATAGATATAAATCTGTTAAAAATT
ATTTACGTAAAAAGCTTCTAATATAAATCTAAGGTACGTCTTAAGCAGTG
CCAATGACTTTAAATGGGCTAGAGAAGAAACTCTTGGATGGCAACGGAGG
CACTTATTCCCCACCGAAAACACAGGAGTATTTTAAACATGCCAGAtgga
aactaaaatctatcgcaaGAATTCAAGAAATGTGCTGAGTGAAAAGAAAG
ACAacactagattcaatctgttATTCAAAGTGCAGCACGAATCTTAAGGC
TTTTTCTAGTTAGCAAGATTCAATTCTAGCCCTCAGAGATTTAAAACTCG
ATGGTCTTGTACATCTACTTTTCCAGACTTCCAGAGAAAAATTATCATAA
ATGTCCCTCAATCAATTAAGTGTAAATGTACATTAAAAGGTTTTACGATA
TCCTAAATCTTAAAGATAAGAGTGGAGGAATACCTGAAAGAGGATCTGAG
AAAGGGATTTTGATGGATGGATGAATTAAGGTAGGTTCTTAAGACAGGGG
AGGGGAGATTAAGTAATTGACTTCAAATCTTAAGTTTTTTACTTGAAACT
TCCTTAATTTCTTTGTCGCGTTCAGACATTGAACGCTTCAGCTCATCTTG
CATAGGAAGATCAGTTGTGTCTTTGTTAGAGtctttttccttcaattttt
tattttcagatttttctttttccaacaAACCATCAATCATTTGAATCAAA
TCATATTTGGTGATTCCTGTTTTCATTCTAAGTATGTCTTTCAAATCTTT
CATTATCAATATTATCCATCCATTATTTATCAAATTGATCAAAATAATGC
CTTGCCACTTCATTTGCTTCCTCCATCTATAGTATGATGTAGTGAATCAA
TTTCCTGAAATCGGCCGCCATTCCAGCACAGTTCAACACTCCATAATCCA
GTTTTCTCACAGGTCATAATTGTTgtcaattttttctgttttctattTTC
TGGATGACATTAAATAGGAATTCAAAGTAGAGAACAAATAATTCAGAGGC
TAGTAATTTATAGGATGGTCTTTAACAGAATTCTTAAATCTTAGAAATTA
CCCAGTTAACCAAAACTTCCTGAGAATCGTTTTCAAAAGGTAAATCTGAA
CTAGTAGAGTCTATACATCTATAATCAAATATTGGGTTAGTCGTAATTTA
AAATTTGTCAGGAATAGCATATGGGTTCAATAAAAGTTCATACAGTaaga
tcaaataaaattttacttaTGGAATAGTTCTACAGACAAAGAACTGTAAA
TCTAGAGTTTATTACAAATTTATTACAAATGAATGGCTACTCCAAGTCCA
GATTTTacatctttaaaaaattttaaaatttacacaATTATCATGCTTTA
TAGTTATGAGTATAACAACAAATCTTTTCAAATCTCTTTTTGCTTGCATC
AGTTGAAATGTCCTTAAAAAGGTCTACTACTTTAAACTCTTCGAAAGAAG
ACTCTTTTGCAATATTAACAAAGTGCATTTATCACCTTCCATTATCGATA
TCTTCCATCAAAAAATCATCTGGTTCTAGCACAGTTGGTTTGACCAAGTG
TGGGAAGTTGAGCTACATTAAGTCCGTTCAATAAAGGATGAGAAGGCAAC
ACATAATACCGTTCATGTATAACATAACCAGAATCAAAGCCATATTTATC
TGCACCTGGTACATTTCTTACGTGTACTACTTCCCTTCTTACACGGATGT
CTGGATCTGGTTTATTATCTTGTTGTTGCAACTGTTGACCTGCTTTTgtt
atttcatttaaaatgaggGGAGCTGCCCCTAGAATACCTCCAAGCTGTTG
TAGCTGTGGATCAATCATAGGTCCTTGGTTTCTCCTGTCATCATTTCGAT
TATAAGGTCCACTTCGTCTATTATTGGGACCACCATCTCTTCTATTATTT
CCGAtatctcttttattgttgttctcCCTGCCACCACCACCAGTTTTCTT
GGCTTTTGACATTTGAACTGATAATGTCTTTCCAAATAATTTTGTCTTAT
CCACACCTTTTATTGCATCTTGACATGCTTGGCTAGTTGGCAAAGTAACA
AAACCATAATTCTGAATAATGTTCACATCGGTAGGGCCCCCTCCATAGGA
TTTAAATAAGTCACGTAAAGTATCTTTTTCCAGGTTATCAGGAAGATTTC
CGATATGTAGTTTATTcatgtttctttattttgttactTTGTTTATCAAC
tgtaaagataagaaaaatgaaaaaaggttaGGTTAGATTTTTTGACTTAT
ACTCACGGAaataattaaaatgaaaaaaaactattgACAATTGGAAATAG
TTGGAGACAGTTCAGAATTGTTAGAAAAAATACAAGGTGATTCTGGGCCT
GAAATAACAATTCTTGGTTTATTGGTAAGAGAGATGATGATGTTTCT

Run BLAST on NCBI

transcript from alignment at scaffold_362:186911..189526-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062226 ID=TCONS_00062226|Name=TCONS_00062226|organism=Clytia hemisphaerica|type=transcript|length=2616bp|location=Sequence derived from alignment at scaffold_362:186911..189526- (Clytia hemisphaerica)
AAAATGGACTTATATAATTAATTGAATTCTGACAGAAAGGTGATTGGTTA
TAAACCGTTTATGAAAATGAAAATATAAAATGAAAATATATAAAAAAAAA
AAATCTCTACATAAAATCTGTGTTAAATAGATATAAATCTGTTAAAAATT
ATTTACGTAAAAAGCTTCTAATATAAATCTAAGGTACGTCTTAAGCAGTG
CCAATGACTTTAAATGGGCTAGAGAAGAAACTCTTGGATGGCAACGGAGG
CACTTATTCCCCACCGAAAACACAGGAGTATTTTAAACATGCCAGATGGA
AACTAAAATCTATCGCAAGAATTCAAGAAATGTGCTGAGTGAAAAGAAAG
ACAACACTAGATTCAATCTGTTATTCAAAGTGCAGCACGAATCTTAAGGC
TTTTTCTAGTTAGCAAGATTCAATTCTAGCCCTCAGAGATTTAAAACTCG
ATGGTCTTGTACATCTACTTTTCCAGACTTCCAGAGAAAAATTATCATAA
ATGTCCCTCAATCAATTAAGTGTAAATGTACATTAAAAGGTTTTACGATA
TCCTAAATCTTAAAGATAAGAGTGGAGGAATACCTGAAAGAGGATCTGAG
AAAGGGATTTTGATGGATGGATGAATTAAGGTAGGTTCTTAAGACAGGGG
AGGGGAGATTAAGTAATTGACTTCAAATCTTAAGTTTTTTACTTGAAACT
TCCTTAATTTCTTTGTCGCGTTCAGACATTGAACGCTTCAGCTCATCTTG
CATAGGAAGATCAGTTGTGTCTTTGTTAGAGTCTTTTTCCTTCAATTTTT
TATTTTCAGATTTTTCTTTTTCCAACAAACCATCAATCATTTGAATCAAA
TCATATTTGGTGATTCCTGTTTTCATTCTAAGTATGTCTTTCAAATCTTT
CATTATCAATATTATCCATCCATTATTTATCAAATTGATCAAAATAATGC
CTTGCCACTTCATTTGCTTCCTCCATCTATAGTATGATGTAGTGAATCAA
TTTCCTGAAATCGGCCGCCATTCCAGCACAGTTCAACACTCCATAATCCA
GTTTTCTCACAGGTCATAATTGTTGTCAATTTTTTCTGTTTTCTATTTTC
TGGATGACATTAAATAGGAATTCAAAGTAGAGAACAAATAATTCAGAGGC
TAGTAATTTATAGGATGGTCTTTAACAGAATTCTTAAATCTTAGAAATTA
CCCAGTTAACCAAAACTTCCTGAGAATCGTTTTCAAAAGGTAAATCTGAA
CTAGTAGAGTCTATACATCTATAATCAAATATTGGGTTAGTCGTAATTTA
AAATTTGTCAGGAATAGCATATGGGTTCAATAAAAGTTCATACAGTAAGA
TCAAATAAAATTTTACTTATGGAATAGTTCTACAGACAAAGAACTGTAAA
TCTAGAGTTTATTACAAATTTATTACAAATGAATGGCTACTCCAAGTCCA
GATTTTACATCTTTAAAAAATTTTAAAATTTACACAATTATCATGCTTTA
TAGTTATGAGTATAACAACAAATCTTTTCAAATCTCTTTTTGCTTGCATC
AGTTGAAATGTCCTTAAAAAGGTCTACTACTTTAAACTCTTCGAAAGAAG
ACTCTTTTGCAATATTAACAAAGTGCATTTATCACCTTCCATTATCGATA
TCTTCCATCAAAAAATCATCTGGTTCTAGCACAGTTGGTTTGACCAAGTG
TGGGAAGTTGAGCTACATTAAGTCCGTTCAATAAAGGATGAGAAGGCAAC
ACATAATACCGTTCATGTATAACATAACCAGNTACATTAAGCCCGTTCAA
TAAAGGATGAGAAGGCAACACATAATACCGTTCATGTATAACATAACCAG
AATCAAAGCCATATTTATCTGCACCTGGTACATTTCTTACGTGTACTACT
TCCCTTCTTACACGGATGTCTGGATCTGGTTTATTATCTTGTTGTTGCAA
CTGTTGACCTGCTTTTGTTATTTCATTTAAAATGAGGGGAGCTGCCCCTA
GAATACCTCCAAGCTGTTGTAGCTGTGGATCAATCATAGGTCCTTGGTTT
CTCCTGTCATCATTTCGATTATAAGGTCCACTTCGTCTATTATTGGGACC
ACCATCTCTTCTATTATTTCCGATATCTCTTTTATTGTTGTTCTCCCTGC
CACCACCACCAGTTTTCTTGGCTTTTGACATTTGAACTGATAATGTCTTT
CCAAATAATTTTGTCTTATCCACACCTTTTATTGCATCTTGACATGCTTG
GCTAGTTGGCAAAGTAACAAAACCATAATTCTGAATAATGTTCACATCGG
TAGGGCCCCCTCCATAGGATTTAAATAAGTCACGTAAAGTATCTTTTTCC
AGGTTATCAGGAAGATTTCCGATATGTAGTTTATTCATGTTTCTTTATTT
TGTTACTTTGTTTATCAACTGTAAAGATAAGAAAAATGAAAAAAGGTTAG
GTTAGATTTTTTGACTTATACTCACGGAAATAATTAAAATGAAAAAAAAC
TATTGACAATTGGAAATAGTTGGAGACAGTTCAGAATTGTTAGAAAAAAT
ACAAGGTGATTCTGGGCCTGAAATAACAATTCTTGGTTTATTGGTAAGAG
AGATGATGATGTTTCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039008	XLOC_039008	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062226-exon-scaffold_362-1575043694:187754..189526	TCONS_00062226-exon-scaffold_362-1575043694:187754..189526	Clytia hemisphaerica	exon
TCONS_00062226-exon-scaffold_362-1575043694:186911..187684	TCONS_00062226-exon-scaffold_362-1575043694:186911..187684	Clytia hemisphaerica	exon
TCONS_00062226-exon-scaffold_362-1510915933:187754..189526	TCONS_00062226-exon-scaffold_362-1510915933:187754..189526	Clytia hemisphaerica	exon
TCONS_00062226-exon-scaffold_362-1510915933:186911..187684	TCONS_00062226-exon-scaffold_362-1510915933:186911..187684	Clytia hemisphaerica	exon
TCONS_00062226-exon-scaffold_362-1491911889:187754..189526	TCONS_00062226-exon-scaffold_362-1491911889:187754..189526	Clytia hemisphaerica	exon
TCONS_00062226-exon-scaffold_362-1491911889:186911..187684	TCONS_00062226-exon-scaffold_362-1491911889:186911..187684	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_362	supercontig	scaffold_362:186911..189526 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.1149	46.338	86.5698	101.15	78.66	61.7026	33.5556	35.122	23.3471	22.6497	14.8202	12.8448	9.41661	9.70509	14.6739	13.7028	27.8177	21.4291	4.24238	6.21171	17.8746	16.9566	68.7075	57.7873	24.3404	29.415	11.9849	9.68178	34.1662	42.5914

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00062226 vs. Swiss-Prot (Human)

BLAST of TCONS_00062226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00062226 (transcript) - C. hemisphaerica