TCONS_00062223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062223
Unique NameTCONS_00062223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062223 ID=TCONS_00062223|Name=TCONS_00062223|organism=Clytia hemisphaerica|type=transcript|length=1685bp
gagaaatatttgacgtcaaatattttttttgcaataagatatttcaaatt
tgtgaaaaataaattttcaatctCGAATCGAATTGGAACGTATAAGACGT
GTTAATTTTGGAGATTTTTAATTTAATAATATGAAGGATATAATGAATGC
ACAAGAGGTGATGGAGTTGGTCCAAAAAGCGAAGAATCAAATGAAAGAAT
GGGACGATGGTAAGGAGCAGAGACAGTTGTTGGTCGAAAAGTTgaaggaa
gaagaaaaattgagaataacAAGAGAAGAGGAGTTTTTGGCGAAAGaagc
taaaaaaataaaaatagtccAAGAAGCAGAGAAAGATTTAGATGGAGAAT
CTCAAAAAGAGTTGAAGGCTAGAACCGAGAGATTCAACTCGAAACTTGAT
AACCTGtgtggaaaatttttcaaacgaatTTACAACCTTGAGGATGAACG
TGATTTACTTAAGTCAACATTAAGAGATGCTTTGAAACAGAAGAATGACA
GTGATCAAAAGTTGACATGCGCCATTTTGCAAATTGGAAATATGTTGTTT
GAATGTGACCAAGCAAAGAAGATCAAAGAGGAAAATATCAAGTTGAAGGA
ACAGATCACTGAATGCACAAAAAAACCAAATCtagaatttcaaaatgaag
attCAATGGGCACAAGCTCATCACCAGAAAACAAACCAAGTGGAAATGAC
ATTGTCATGCAACAACAGTTGACAAAACCAGTAGACAAAAAAACTGAAGT
CAGATTAGAGAAACCACACATGGTACCTGTTGTGACCGAAGAGCGCAAAT
CACAACAATCTTTAGCAAAGAAACAGAGCGAGGTTGAGACGGTCGTTCCC
CAAAAAGCTCCTCAATCACCGCTGACGGAAAAATTTGCTGAACAGAAGAA
GCGTCGGgcgttgaaaaatgaaaaaccagCTGAAAAGATACATGTcccaa
aatttacaaaatcgaAACATAACAGCGCTTCGCCGGACAAACAAAAGAAT
CTAAACAAAGGTAACAATAAATCTACTAAAACAAGCCGCAGTACCCAAGC
ATTAGGAAAAAAGGCACCACGAGTTACCAAAGCAAACAACACAACCGTCA
AGAATGGTCACATGATCCAAGAACAAAAGAGGGTGCCACGAGTTACCAAA
GAAAATGACACAGCCGTCAAGAAAGGTTACATCGCCCAAGTATTAGACAA
GAAGGCGCCACGTGCTGCCAAAGACAAACCTATGGCTGGCTTGCAAAAGG
ATGTCAGAATGCAAAGCAACGATTCTCAAGATTGGCGCAATGGAAAGATT
GCAATGACTTCTGTTTTTATTAAAGAAGGGATACAACAGGTTAAAAGAAA
CGTCCCAACTGATAGCAAAAATCAAGCGAAACTCGAATCAAGCCAATCAG
TTGACGACATCAAGCCTAAAGAATCTACTCAAAAATCAAACGCATCACCA
TCAAGACGACAACGTTCACCTGGTTTCAAGAAACATCCTGGTTTCACACC
CAAACAATCTGCTCCCAAAGTGTTCTACCAAAATGGACATCACTTCCCAT
CTACAGAATGTTGGGAATAAATCCCAGCagcaaatttttaaattttctat
taATTATTTTACTACTTTTTAATATTCTTTCACTATTTTactaattttaa
tattttataataatttctaaactaatttttactat
Run BLAST on NCBI

protein sequence of TCONS_00062223-protein

>TCONS_00062223-protein ID=TCONS_00062223-protein|Name=TCONS_00062223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MKDIMNAQEVMELVQKAKNQMKEWDDGKEQRQLLVEKLKEEEKLRITREE
EFLAKEAKKIKIVQEAEKDLDGESQKELKARTERFNSKLDNLCGKFFKRI
YNLEDERDLLKSTLRDALKQKNDSDQKLTCAILQIGNMLFECDQAKKIKE
ENIKLKEQITECTKKPNLEFQNEDSMGTSSSPENKPSGNDIVMQQQLTKP
VDKKTEVRLEKPHMVPVVTEERKSQQSLAKKQSEVETVVPQKAPQSPLTE
KFAEQKKRRALKNEKPAEKIHVPKFTKSKHNSASPDKQKNLNKGNNKSTK
TSRSTQALGKKAPRVTKANNTTVKNGHMIQEQKRVPRVTKENDTAVKKGY
IAQVLDKKAPRAAKDKPMAGLQKDVRMQSNDSQDWRNGKIAMTSVFIKEG
IQQVKRNVPTDSKNQAKLESSQSVDDIKPKESTQKSNASPSRRQRSPGFK
KHPGFTPKQSAPKVFYQNGHHFPSTECWE
Run BLAST on NCBI

transcript from alignment at scaffold_362:26941..29047-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062223 ID=TCONS_00062223|Name=TCONS_00062223|organism=Clytia hemisphaerica|type=transcript|length=2107bp|location=Sequence derived from alignment at scaffold_362:26941..29047- (Clytia hemisphaerica)
GAGAAATATTTGACGTCAAATATTTTTTTTGCAATAAGATATTTCAAATT
TGTGAAAAATAAATTTTCAATCTCGAATCGAATTGGAACGTATAAGACGT
GTTAATTTTGGAGATTTTTAATTTAATAATATGAAGGATATAATGAATGC
ACAAGAGGTGATGGAGTTGGTCCAAAAAGCGAAGAATCAAATGAAAGAAT
GGGACGATGGTAAGGAGCAGAGACAGTTGTTGGTCGAAAAGTTGAAGGAA
GAAGAAAAATTGAGAATAACAAGAGAAGAGGAGTTTTTGGCGAAAGAAGC
TAAAAAAATAAAAATAGTCCAAGAAGCAGAGAAAGATTTAGATGGAGAAT
CTCAAAAAGAGTTGAAGGCTAGAACCGAGAGATTCAACTCGAAACTTGAT
AACCTGTGTGGAAAATTTTTCAAACGAATTTACAACCTTGAGGATGAACG
TGATTTACTTAAGTCAACATTAAGAGATGCTTTGAAACAGAAGAATGACA
GTGATCAAAAGTTGACATGCGCCATTTTGCAAATTGGAAATATGTTGTTT
GAATGTGACCAAGCAAAGAAGATCAAAGAGGAAAATATCAAGTTGAAGGA
ACAGATCACTGAATGCACAAAAAAACCAAATCTAGAATTTCAAAATGAAG
ATTCAATGGGCACAAGCTCATCACCAGAAAACAAACCAAGTGGAAATGAC
ATTGTCATGCAACAACAGTTGACAAAACCAGTAGACAAAAAAACTGAAGT
CAGATTAGAGAAACCACACATGGTACCTGTTGTGACCGAAGAGCGCAAAT
CACAACAATCTTTAGCAAAGAAACAGAGCGAGGTAATTAAATTTATAAAC
TTTTATTTGGTTGGTCTTCAAAAAGTTTCAAATAAATGCATTCTATTATT
AGATCATTGATTTAATCCATGATTAGTCTCCATAACTCAAACACACACAA
GGAACACAAATTTGTTAAAATTGGTTTATACTATAATGAAAGGTCCAGAA
ATCCTGTTCTAGTTGAGCGTATATTTTTTAGGATAGCTGGAATGGGGTGA
TTTTTGAGAAAAGCACTGTAAGGATGGAATTTTTTCAGCAAATCCAGAAA
AGATTCTGATTTTTCGCTGCACCGTAAGAGTGCGATCATAAAAGCCAATT
TTTTTCTGCACATACCGTCAGTTGGTAAACCCACTGAGCCTTGAGTTTAG
GAGACATTCGATAGGTTATCGAGTTATTAAACTTTCTATTTTCATAAACT
TTAGGTTGAGACGGTCGTTCCCCAAAAAGCTCCTCAATCACCGCTGACGG
AAAAATTTGCTGAACAGAAGAAGCGTCGGGCGTTGAAAAATGAAAAACCA
GCTGAAAAGATACATGTCCCAAAATTTACAAAATCGAAACATAACAGCGC
TTCGCCGGACAAACAAAAGAATCTAAACAAAGGTAACAATAAATCTACTA
AAACAAGCCGCAGTACCCAAGCATTAGGAAAAAAGGCACCACGAGTTACC
AAAGCAAACAACACAACCGTCAAGAATGGTCACATGATCCAAGAACAAAA
GAGGGTGCCACGAGTTACCAAAGAAAATGACACAGCCGTCAAGAAAGGTT
ACATCGCCCAAGTATTAGACAAGAAGGCGCCACGTGCTGCCAAAGACAAA
CCTATGGCTGGCTTGCAAAAGGATGTCAGAATGCAAAGCAACGATTCTCA
AGATTGGCGCAATGGAAAGATTGCAATGACTTCTGTTTTTATTAAAGAAG
GGATACAACAGGTTAAAAGAAACGTCCCAACTGATAGCAAAAATCAAGCG
AAACTCGAATCAAGCCAATCAGTTGACGACATCAAGCCTAAAGAATCTAC
TCAAAAATCAAACGCATCACCATCAAGACGACAACGTTCACCTGGTTTCA
AGAAACATCCTGGTTTCACACCCAAACAATCTGCTCCCAAAGTGTTCTAC
CAAAATGGACATCACTTCCCATCTACAGAATGTTGGGAATAAATCCCAGC
AGCAAATTTTTAAATTTTCTATTAATTATTTTACTACTTTTTAATATTCT
TTCACTATTTTACTAATTTTAATATTTTATAATAATTTCTAAACTAATTT
TTACTAT

Coding sequence (CDS) from alignment at scaffold_362:26941..29047-

>TCONS_00062223 ID=TCONS_00062223|Name=TCONS_00062223|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_362:26941..29047- (Clytia hemisphaerica)
GTTGAGACGGTCGTTCCCCAAAAAGCTCCTCAATCACCGCTGACGGAAAA
ATTTGCTGAACAGAAGAAGCGTCGGGCGTTGAAAAATGAAAAACCAGCTG
AAAAGATACATGTCCCAAAATTTACAAAATCGAAACATAACAGCGCTTCG
CCGGACAAACAAAAGAATCTAAACAAAGGTAACAATAAATCTACTAAAAC
AAGCCGCAGTACCCAAGCATTAGGAAAAAAGGCACCACGAGTTACCAAAG
CAAACAACACAACCGTCAAGAATGGTCACATGATCCAAGAACAAAAGAGG
GTGCCACGAGTTACCAAAGAAAATGACACAGCCGTCAAGAAAGGTTACAT
CGCCCAAGTATTAGACAAGAAGGCGCCACGTGCTGCCAAAGACAAACCTA
TGGCTGGCTTGCAAAAGGATGTCAGAATGCAAAGCAACGATTCTCAAGAT
TGGCGCAATGGAAAGATTGCAATGACTTCTGTTTTTATTAAAGAAGGGAT
ACAACAGGTTAAAAGAAACGTCCCAACTGATAGCAAAAATCAAGCGAAAC
TCGAATCAAGCCAATCAGTTGACGACATCAAGCCTAAAGAATCTACTCAA
AAATCAAACGCATCACCATCAAGACGACAACGTTCACCTGGTTTCAAGAA
ACATCCTGGTTTCACACCCAAACAATCTGCTCCCAAAGTGTTCTACCAAA
ATGGACATCACTTCCCATCTACAGAATGTTGGGAATAAATGAAGGATATA
ATGAATGCACAAGAGGTGATGGAGTTGGTCCAAAAAGCGAAGAATCAAAT
GAAAGAATGGGACGATGGTAAGGAGCAGAGACAGTTGTTGGTCGAAAAGT
TGAAGGAAGAAGAAAAATTGAGAATAACAAGAGAAGAGGAGTTTTTGGCG
AAAGAAGCTAAAAAAATAAAAATAGTCCAAGAAGCAGAGAAAGATTTAGA
TGGAGAATCTCAAAAAGAGTTGAAGGCTAGAACCGAGAGATTCAACTCGA
AACTTGATAACCTGTGTGGAAAATTTTTCAAACGAATTTACAACCTTGAG
GATGAACGTGATTTACTTAAGTCAACATTAAGAGATGCTTTGAAACAGAA
GAATGACAGTGATCAAAAGTTGACATGCGCCATTTTGCAAATTGGAAATA
TGTTGTTTGAATGTGACCAAGCAAAGAAGATCAAAGAGGAAAATATCAAG
TTGAAGGAACAGATCACTGAATGCACAAAAAAACCAAATCTAGAATTTCA
AAATGAAGATTCAATGGGCACAAGCTCATCACCAGAAAACAAACCAAGTG
GAAATGACATTGTCATGCAACAACAGTTGACAAAACCAGTAGACAAAAAA
ACTGAAGTCAGATTAGAGAAACCACACATGGTACCTGTTGTGACCGAAGA
GCGCAAATCACAACAATCTTTAGCAAAGAAACAGAGCGAGGTTGAGACGG
TCGTTCCCCAAAAAGCTCCTCAATCACCGCTGACGGAAAAATTTGCTGAA
CAGAAGAAGCGTCGGGCGTTGAAAAATGAAAAACCAGCTGAAAAGATACA
TGTCCCAAAATTTACAAAATCGAAACATAACAGCGCTTCGCCGGACAAAC
AAAAGAATCTAAACAAAGGTAACAATAAATCTACTAAAACAAGCCGCAGT
ACCCAAGCATTAGGAAAAAAGGCACCACGAGTTACCAAAGCAAACAACAC
AACCGTCAAGAATGGTCACATGATCCAAGAACAAAAGAGGGTGCCACGAG
TTACCAAAGAAAATGACACAGCCGTCAAGAAAGGTTACATCGCCCAAGTA
TTAGACAAGAAGGCGCCACGTGCTGCCAAAGACAAACCTATGGCTGGCTT
GCAAAAGGATGTCAGAATGCAAAGCAACGATTCTCAAGATTGGCGCAATG
GAAAGATTGCAATGACTTCTGTTTTTATTAAAGAAGGGATACAACAGGTT
AAAAGAAACGTCCCAACTGATAGCAAAAATCAAGCGAAACTCGAATCAAG
CCAATCAGTTGACGACATCAAGCCTAAAGAATCTACTCAAAAATCAAACG
CATCACCATCAAGACGACAACGTTCACCTGGTTTCAAGAAACATCCTGGT
TTCACACCCAAACAATCTGCTCCCAAAGTGTTCTACCAAAATGGACATCA
CTTCCCATCTACAGAATGTTGGGAATAAATGAAGGATATAATGAATGCAC
AAGAGGTGATGGAGTTGGTCCAAAAAGCGAAGAATCAAATGAAAGAATGG
GACGATGGTAAGGAGCAGAGACAGTTGTTGGTCGAAAAGTTGAAGGAAGA
AGAAAAATTGAGAATAACAAGAGAAGAGGAGTTTTTGGCGAAAGAAGCTA
AAAAAATAAAAATAGTCCAAGAAGCAGAGAAAGATTTAGATGGAGAATCT
CAAAAAGAGTTGAAGGCTAGAACCGAGAGATTCAACTCGAAACTTGATAA
CCTGTGTGGAAAATTTTTCAAACGAATTTACAACCTTGAGGATGAACGTG
ATTTACTTAAGTCAACATTAAGAGATGCTTTGAAACAGAAGAATGACAGT
GATCAAAAGTTGACATGCGCCATTTTGCAAATTGGAAATATGTTGTTTGA
ATGTGACCAAGCAAAGAAGATCAAAGAGGAAAATATCAAGTTGAAGGAAC
AGATCACTGAATGCACAAAAAAACCAAATCTAGAATTTCAAAATGAAGAT
TCAATGGGCACAAGCTCATCACCAGAAAACAAACCAAGTGGAAATGACAT
TGTCATGCAACAACAGTTGACAAAACCAGTAGACAAAAAAACTGAAGTCA
GATTAGAGAAACCACACATGGTACCTGTTGTGACCGAAGAGCGCAAATCA
CAACAATCTTTAGCAAAGAAACAGAGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039006XLOC_039006Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062223-proteinTCONS_00062223-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062223-exon-scaffold_362-1575043694:28216..29047TCONS_00062223-exon-scaffold_362-1575043694:28216..29047Clytia hemisphaericaexon
TCONS_00062223-exon-scaffold_362-1575043694:26941..27793TCONS_00062223-exon-scaffold_362-1575043694:26941..27793Clytia hemisphaericaexon
TCONS_00062223-exon-scaffold_362-1510915933:28216..29047TCONS_00062223-exon-scaffold_362-1510915933:28216..29047Clytia hemisphaericaexon
TCONS_00062223-exon-scaffold_362-1510915933:26941..27793TCONS_00062223-exon-scaffold_362-1510915933:26941..27793Clytia hemisphaericaexon
TCONS_00062223-exon-scaffold_362-1491911889:28216..29047TCONS_00062223-exon-scaffold_362-1491911889:28216..29047Clytia hemisphaericaexon
TCONS_00062223-exon-scaffold_362-1491911889:26941..27793TCONS_00062223-exon-scaffold_362-1491911889:26941..27793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:26941..29047 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.288437	0.234393	0.59157	0.546854	0	0	0	0	0.020255	0	0.0243521	0.0160081	0	0	0	0	0	0	0	0	0	0	0	0.0501115	0.129034	0.161224	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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