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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062215 ID=TCONS_00062215|Name=TCONS_00062215|organism=Clytia hemisphaerica|type=transcript|length=1405bp
ACAAGTTTGGATCGGATATGTACGCATCGAGTTCGTTTGATTGAAGTGCG
CTGTACGAGAAATTTATCTATTCGGTTACAGCACAGCTTATTTGAccttt
ggaactaatttttgagatAAAGATGACGCAAGTAGCCACACCAAGCGATT
ACCAACAACCTACAATCAACCCAAACAATGGTACTGAtaacacaacaaca
acaaacacaaAGGATTCAAAAATCTATATCCACACTGGCAATATTGCGAA
TTGGACCAATGTCAAATCACGACGATCCAATGAGATGCCAACAAATGAAC
TCTACCAATCGTTGTGTAGGACTATCACCAAACATGGGTCACAGCAATTA
GGAGGTTGGAATGAAGAGGAAATCCGTATTAATTGTACCAACACTGAGAA
GATCGATAGCGTGGAACGAGGTCTACTCAAAGTCActgctaaaatattct
tacaaaaacTGGACACAAAAAGCATGGTGAACTCTGTTAACTCAACATTG
AAACAACTCGGTTTACACTCCATTGATAGTCTATATCTAGCCTTACCACC
GTTCGCAGAAAACCAACCATTTGCTGAGACTATTTTACCACTTTGGGAAG
AGATGGAGCGGTTCCGCGACGCCGGTCTTGCGACGCAAATCTCAACTTGT
GATCTGGACCATGAGAAATTGAAAACGTTGGTTGAAATGGTCAAAATCAG
ACCGGAAGTGAATCAAGTCAACTTAACGTCTTGTTGTCACATGCCTGAAG
ATTTGGTACAATATGCTAAAGAAATCGGTATCGTTCTACACACGCATGGC
GATCAAGCTGTCATGTTACCAGATGAGAATGTCGAAGCACTCATCAACGT
CCTCAAGCCAGACGATGACCGGACTTTTTCGACCGATTGGATTGTCCGTT
ATGCGGTTGTTGTTAAATGCCGGGGAGTCATCAAGTCTAAAGGTTACATT
GCAGCTATCGATGCTCTCACAAATACAGAGTAACCTATGTCAAAATGACt
cgtattgtttttttttaaatccaccGAAAAGCGAAAATCAAATCTTTTGA
ACATTGTACTATTCATCAATATTGATATTTGCTGAATGCCGGAACGTGAA
AACCAAATAAGGCAGtaccatattcaatttttctacTATTGAGTTTAACC
AGAGGTAATATTTTCAGCATGGAAAGCAAAAGGCTAATCATTCGAATTTC
AGAAACCTTTTGCGAGTAGAGAGCTTTGAATTTCGTATAAATCTTTAGCG
ATCAGATGATCGATTTTTCGGCTGTTTCTACTCAAAGGATTATACCAAAT
AAATGGAGCGAGACTTCATTCAAACTCAAGTACTTTTttatattgggctc
ttccagaaaatacccgtgcatggggggggggggggggggtaggatatagt
gtccg Run BLAST on NCBI transcript from alignment at scaffold_362:771975..777881+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062215 ID=TCONS_00062215|Name=TCONS_00062215|organism=Clytia hemisphaerica|type=transcript|length=5907bp|location=Sequence derived from alignment at scaffold_362:771975..777881+ (Clytia hemisphaerica)
ACAAGTTTGGATCGGATATGTACGCATCGAGTTCGTTTGATTGAAGTGCG
CTGTACGAGAAATTTATCTATTCGGTTACAGCACAGCTTATTTGAccttt
ggaactaatttttgagGTAAAATAAGAGTTTGAgagttagttcatctaat
gtttccagctcacccaaatagagacttatacgcGTGCGTAATTTATCGTT
ATTTAAACCTCTAGTCGTTAAATAGTCACTGACCAGGTCGGGGTTTGGGA
CGGCAAAATATGTCTTTCTTTGATAGGTAGGGTTACTGTTAGGGTTTTTC
GTTCTTGTTGTCGCTTTTTAGAtagtctggaaacgttagatgaacagtct
ctgACATGTGTTTGAATTTAAACCAGGAATGGCTCAGCATATCCTAAATT
CTTCACAAATTGCATGATCAAACTTTCCCGAAAATGTTTCGAGTCAGAGT
AGAGGGCGTTAAAGGGGTGGTTAATTGTTTTGTCTGagaagtactcttag
gttccaaataaacgggggggttcgaataaacgggggggttggaaaatttt
gtagatttcaataaatggggggacctaattgccgggggggttggaaattg
tacttctgaaacccaaaaataaggtaaaaataggctaaaatcaggctata
tagagcaaaataaggggccttctcttcgacagctcaaaatattcttagag
attaataaacggggggtcctaataaggtccgggggggttggaaaattttc
gaaaaattaacaagcgggggggcccgtttatttggaacctaagagtaaag
aAAGAAGGAATATGTTTATTGCAAATCCGCCGGagatcattttgaagaat
ttcgtTTGTTTTCATAAACATGAAGTAATACTCAAAGTAAAGTGAAAAGT
TTATAACTACAATGTTACACAACTTTACTACGAATCtaaattaaaagttt
taatttgaaTTCACACATGGAAAATCTGCTTGGTACTCATCAAGCATTTT
AAGGTTGGTGACCTTTCCTGTTTTGTAGGAAGAAAAGTAAAACACACAAG
AATTTACTAAATTTGTTAtttaaaagttatgaaattTTAGGGTTAGGCTC
AAAGTATCCTTGAAATCTTCTACAATCCCCCAACAAATATCTTGAGACAG
AAGATTTCGAAACATTTTTGGAAGATAAAAATCCGTCCCCCGGACCCCAC
TGTCAGTGTTGAGTCCGGAAATGGCCGAGAACTCAACGCTGACAGTGGGG
GAAAGGGGGACCATGTGAAGTGTCTCAGATATAAATTGGGGGATTgtagt
taaaggttttattttcatttaagtgttctcgtttcataccagacacatat
ttcatatcagtacagtgtcttgctattggttatattatgctgatataagc
aaaaaaaaatgttttcttttcctctttttgacaaatcttgctccacatac
acgtttttttttataagaacgtcaaaaatttttgaagccttcggatgttc
ttagttttttggatttgaagcctaaaaatgttcttaaaatgttcttattt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNtaagtctccaaagccttagaattttcttagaatgttc
ttaaatttttgggcctcgaagccttatgttcttatatagtttgttcttat
aaaaaaaaaacgtgtacgtgtCAATCCATTGTTAAAAAGCTTgttaatta
aaattgatgagtaagcaaacgatatcactcttatttaaaaacaaaacctt
taaataccATTCATTAGCCACCATTTGTAGTGAAGTACGTAATGAAGAAT
TtggaaacaaaaacaaacaatgattgtttattttgttgaagtttATGTTT
GATGCTGGTCATGTGAGTGAGTAAGAAGGTAAACTGATTTCGAAAATGAG
AGATATAATCTTTACTAAATCTGTGCGGTCAAGAAATCAAGTGGCAAGTG
ACGATGGAAAAATCAAGGCAAAGGCACAAGGAGGCTGATCAAAAAACCTT
GTTGATTGTCAATTAGTTCAGGTACCAATCAAGCTAAATGTTTGTTGCCA
ATTTGGCAGCATGTACGGTGTAATACGGGAGGGCGTACAGTATGCTGGGC
AAGCAACGCTAGTTTTAAATGAAGTGGGAAATCAAATTAACATTAACAAC
CTAGAAGATTATCAGTCAAAAATGTTCCGACGAGTAGTTTTGTAGTAGTA
TAGGTTTGAATATTGATTGAAATATTCTGAGAAAAATTCGAAGAGTGTAC
CAGTAGAACAAAGATTTCAACAATGAGAAGAGATTTCGCAATCACGTGAG
CTATTCAGCATGATAGataagattttcttttgaatgagATTTCACGAGAT
TTCTCTCAATCGGGTACAAAGGTCGCTTAGAATACTATACTATACTGTAC
GCTGTACTATTGATATAATGTTTTTCTCTACGACTAGTAGCTTGTGGGTG
ATAGTAGGCTGAAAACTTTGATGAAGTTGTTCAGTGTTTGAATCTTTCAT
GTTTGACcttgaaagttttgaaagttgaCCTTTGGAATTGTTATGATCTG
ATGATATTCACTTTCCAACTTTCTGATTTGCGgaaaatttgttgttgttg
atgttaTGTAAACTGTTTACAAGTTAAATGTTGTTTTGTGTGCAACTACT
TAATACCGATAacgtaaagtgaaagagttgaAAATAATAACTTCAAGTTT
GACGAACAAGTTTGTTGACATTATGCAATCTCTTTGGCAAAGCTCATCCA
ACAATATAACGCTCTTTAGGCTTTATATCCCTCCATAATATAAAGGATAA
GAAAAGatcaaaaatttacattttggCATTAGCTTTTTAAAAGATATCCA
TTATTCGTTTAATACTTGTCCTCATACAATGACCAAattttgtaatgttt
gtaaATCATCAAAATTGGTTCATAAAAGACATCTTGATGTTTGATGAAAA
CAGCTTTTGGAAATTCTTTCTTATAGCAGGAGGTCTAATCGTCTAGAGGC
CAGGGAGAATTATGTAGCTGACATTGATTTGATGTGTTGTGCTACCCAAA
CTATGATGTAGTAGAATACACCTGACGACCCTTAAAAAAGAGATTTGAAG
AGCGTGGAGACTGGGTTGAAATGTACCAGGGAGGATTGACGTCAAATGTC
TATAGTCGCTGAATTGAATTGATAACACAGAATTTTGAAAGGATTCCTTC
CTGGTAGGTCAACTCAACTAAGCCCCTTTGTGGCgtttaagaccatgttc
agatgTTACGGCTTCGCATAGCGCCGGTATGGCTTTCGTTACGGATATAG
AGCGTTCCGTTTTGGAACGATGTTGAATCGCAACATCTGAACATGGTCAA
ATAAGTGTATTAAATCCAATATCTTATTCAggcattttttcttctttaga
tAAAGATGACGCAAGTAGCCACACCAAGCGATTACCAACAACCTACAATC
AACCCAAACAATGGTACTGAtaacacaacaacaacaaacacaaAGGATTC
AAAAATCTATATCCACACTGGCAATATTGCGAATTGGACCAATGTCAAAT
CACGACGATCCAATGAGATGCCAACAAATGAACTCTACCAATCGTTGTGT
AGGACTATCACCAAACATGGGTCACAGCAATTAGGAGGTAAGTCGCCTGG
aggttcatctaacgttatatggacgttagattcatgtgatattcatgacg
taatgttatctACGGAAATAATCTGGTTTTCGCCAGCAGTGGCAGATTGG
GGTgtttttccgtagaaaacattacgtaatgaatattATGAATTGAGGAT
TTCATAACTAGTCCTGAGCACATTTCTCTAACGGATCCAGACTTAAACTA
GACCTCTTGAAGGGGCTTGAACTTTCTTAAAGTCCGCTTGGTATTTAAAA
CGAACGGTTTGAGAGTTTCTGAAAAATCTGGATTCGACAAAAACACAGCC
TCGGAATAATATATTTCTCAAGGCTTAGTTGTCTTTTACAATGTTAATAA
TTGAATATAACATGGTAACTAAAATACTTCCCATAGGTTGGAATGAAGAG
GAAATCCGTATTAATTGTACCAACACTGAGAAGATCGATAGCGTGGAACG
AGGTCTACTCAAAGTCActgctaaaatattcttacaaaaacTGGACACAA
AAAGCATGGTGAACTCTGTTAACTCAACATTGAAACAACTCGGTTTACAC
TCCATTGATAGTCTATATCTAGCCTTACCACCGTTCGCAGAAAACCAACC
ATTTGCTGAGACTATTTTACCACTTTGGGAAGAGATGGAGCGGTTCCGCG
ACGCCGGTCTTGCGACGCAAATCTCAACTTGTGATCTGGACCATGAGAAA
TTGAAAACGTTGGTTGAAATGGTCAAAATCAGACCGGAAGTGAATCAAGT
CAACTTAACGTCTTGTTGTCACATGCCTGAAGATTTGGTACAATATGCTA
AAGGTAAAatacaaaattcaattttttaaatctacagttgatgctctcta
attcgatcttcaaggaatAAGAGaacttatcgaataagggagcgtcgttt
atgagagtttcttgttgacggggactttaaatctcatcgaataagggagc
ctatcaaatagtagaacgtcgaattagagagcatcaactgtatcTGCCAA
TCTCGTTTTCAAATATCATCGCATAGGTGTTCATGGTCTTCATTACTTAA
TGTTTTATATGGGAAAACCCCGGCTTTtatagccagtagtggcaaactTG
TCAGAAGTTTTCTCTAACTCTAGCTTACATTTTTAAATTTGCTAACAggc
aaaaaccggggttttTCCGCAGagaacattacgtaatgaatataATGAAT
CTCAACACCATTAGACACATACTCTCGGACACCTTATAATTTTTCCCCGT
ccgctttttaatttttgggaaaatgtttttgaaagttccctcttttgccc
taattctgttTTATTAGcctatttttcaaattgttgatttcaattgttct
ctttaatgacaacACGTGggtcgcgcaatgtttacatttcaatactttta
tgttcttttaatttctttcataGAAATCGGTATCGTTCTACACACGCATG
GCGATCAAGCTGTCATGTTACCAGATGAGAATGTCGAAGCACTCATCAAC
GTCCTCAAGCCAGACGATGACCGGACTTTTTCGACCGATTGGATTGTCCG
TTATGCGGTTGTTGTTAAATGCCGGGGAGTCATCAAGTCTAAAGGTTACA
TTGCAGCTATCGATGCTCTCACAAATACAGAGTAACCTATGTCAAAATGA
CtcgtattgtttttttttaaatccaccGAAAAGCGAAAATCAAATCTTTT
GAACATTGTACTATTCATCAATATTGATATTTGCTGAATGCCGGAACGTG
AAAACCAAATAAGGCAGtaccatattcaatttttctacTATTGAGTTTAA
CCAGAGGTAATATTTTCAGCATGGAAAGCAAAAGGCTAATCATTCGAATT
TCAGAAACCTTTTGCGAGTAGAGAGCTTTGAATTTCGTATAAATCTTTAG
CGATCAGATGATCGATTTTTCGGCTGTTTCTACTCAAAGGATTATACCAA
ATAAATGGAGCGAGACTTCATTCAAACTCAAGTACTTTTttatattgggc
tcttccagaaaatacccgtgcatggggggggggggggggggtaggatata
gtgtccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062215-exon-scaffold_362-1491911889:771975..772090 | TCONS_00062215-exon-scaffold_362-1491911889:771975..772090 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1510915933:771975..772090 | TCONS_00062215-exon-scaffold_362-1510915933:771975..772090 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1575043694:771975..772090 | TCONS_00062215-exon-scaffold_362-1575043694:771975..772090 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1491911889:775574..775811 | TCONS_00062215-exon-scaffold_362-1491911889:775574..775811 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1510915933:775574..775811 | TCONS_00062215-exon-scaffold_362-1510915933:775574..775811 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1575043694:775574..775811 | TCONS_00062215-exon-scaffold_362-1575043694:775574..775811 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1491911889:776211..776627 | TCONS_00062215-exon-scaffold_362-1491911889:776211..776627 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1510915933:776211..776627 | TCONS_00062215-exon-scaffold_362-1510915933:776211..776627 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1575043694:776211..776627 | TCONS_00062215-exon-scaffold_362-1575043694:776211..776627 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1491911889:777248..777881 | TCONS_00062215-exon-scaffold_362-1491911889:777248..777881 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1510915933:777248..777881 | TCONS_00062215-exon-scaffold_362-1510915933:777248..777881 | Clytia hemisphaerica | exon |
| TCONS_00062215-exon-scaffold_362-1575043694:777248..777881 | TCONS_00062215-exon-scaffold_362-1575043694:777248..777881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:771975..777881 + |
Blast
BLAST of TCONS_00062215 vs. Swiss-Prot (Human)
Match: GSH0 (Glutamate--cysteine ligase regulatory subunit OS=Homo sapiens GN=GCLM PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.930e-35 Identity = 84/254 (33.07%), Postives = 139/254 (54.72%), Query Frame = 3
Query: 222 IYIHTGNIANWTNVKSRRSNEMPTNELYQSLCRTITKHGSQQLGGWNEEEIR-----INCT---NTEKIDSVERGLLKVTAKIFL-QKLDTKSMVNSVNSTLKQLGLHSIDSLYLALPPFAENQPFA-ETILPLWEEMERFRDAGLATQISTCDLDHEKLKTLVEMVKIRPEVNQVNLTSCCHMPEDLVQYAKEIGIVLHTHGDQAVMLPDENVEALINVLKPD-DDRTFSTDWIVRYAVVVKCRGVIKSKGYI 950
+++ TGN+ NW ++ ++ + EL+ + +T+ + SQ N + +R + CT EKI+ ER +KV+AK+F+ + + S ++V+ LG+ +DS+ +A PP + + E + P WEE+E + I T DLD +L+ L + +++P NQVNL SCC MP DL +AK+ I L TH D +L + + + + PD + W++RY+V+VK RG+IKSKGYI
Sbjct: 18 LHLQTGNLLNWGRLR-KKCPSTHSEELHDCIQKTLNEWSSQI----NPDLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVAQLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQVKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAHEWVPLWLLRYSVIVKSRGIIKSKGYI 266
The following BLAST results are available for this feature:
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