TCONS_00062212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062212
Unique NameTCONS_00062212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062212 ID=TCONS_00062212|Name=TCONS_00062212|organism=Clytia hemisphaerica|type=transcript|length=1517bp
CATAGTAAACAAAGGGTACAGGGAAGAGAAAGGAAAAGAAACTAGCTTGG
TCATTCATCAATAGAAGACATTGGAAGGAAGAGCTAAACGTCTCGTGATT
TATTATGTAGGCTTTTTTTGGCATGAAAATTAATGTGTGTGTAACGAAGA
GGAAGGACAAACGATTGAAAAAAAGTACCAGTAAAGATTTAGTATTGGAT
GGATACAGTTGTTATTAAAACGAAGCAGatAAAGATGACGCAAGTAGCCA
CACCAAGCGATTACCAACAACCTACAATCAACCCAAACAATGGTACTGAt
aacacaacaacaacaaacacaaAGGATTCAAAAATCTATATCCACACTGG
CAATATTGCGAATTGGACCAATGTCAAATCACGACGATCCAATGAGATGC
CAACAAATGAACTCTACCAATCGTTGTGTAGGACTATCACCAAACATGGG
TCACAGCAATTAGGAGGTTGGAATGAAGAGGAAATCCGTATTAATTGTAC
CAACACTGAGAAGATCGATAGCGTGGAACGAGGTCTACTCAAAGTCActg
ctaaaatattcttacaaaaacTGGACACAAAAAGCATGGTGAACTCTGTT
AACTCAACATTGAAACAACTCGGTTTACACTCCATTGATAGTCTATATCT
AGCCTTACCACCGTTCGCAGAAAACCAACCATTTGCTGAGACTATTTTAC
CACTTTGGGAAGAGATGGAGCGGTTCCGCGACGCCGGTCTTGCGACGCAA
ATCTCAACTTGTGATCTGGACCATGAGAAATTGAAAACGTTGGTTGAAAT
GGTCAAAATCAGACCGGAAGTGAATCAAGTCAACTTAACGTCTTGTTGTC
ACATGCCTGAAGATTTGGTACAATATGCTAAAGAAATCGGTATCGTTCTA
CACACGCATGGCGATCAAGCTGTCATGTTACCAGATGAGAATGTCGAAGC
ACTCATCAACGTCCTCAAGCCAGACGATGACCGGACTTTTTCGACCGATT
GGATTGTCCGTTATGCGGTTGTTGTTAAATGCCGGGGAGTCATCAAGTCT
AAAGGTTACATTGCAGCTATCGATGCTCTCACAAATACAGAGTAACCTAT
GTCAAAATGACtcgtattgtttttttttaaatccaccGAAAAGCGAAAAT
CAAATCTTTTGAACATTGTACTATTCATCAATATTGATATTTGCTGAATG
CCGGAACGTGAAAACCAAATAAGGCAGtaccatattcaatttttctacTA
TTGAGTTTAACCAGAGGTAATATTTTCAGCATGGAAAGCAAAAGGCTAAT
CATTCGAATTTCAGAAACCTTTTGCGAGTAGAGAGCTTTGAATTTCGTAT
AAATCTTTAGCGATCAGATGATCGATTTTTCGGCTGTTTCTACTCAAAGG
ATTATACCAAATAAATGGAGCGAGACTTCATTCAAACTCAAGTACTTTTt
tatattgggctcttccagaaaatacccgtgcatggggggggggggggggg
gtaggatatagtgtccg
Run BLAST on NCBI

transcript from alignment at scaffold_362:768172..777881+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062212 ID=TCONS_00062212|Name=TCONS_00062212|organism=Clytia hemisphaerica|type=transcript|length=9710bp|location=Sequence derived from alignment at scaffold_362:768172..777881+ (Clytia hemisphaerica)
CATAGTAAACAAAGGGTACAGGGAAGAGAAAGGAAAAGAAACTAGCTTGG TCATTCATCAATAGAAGACATTGGAAGGAAGAGCTAAACGTCTCGTGATT TATTATGTAGGCTTTTTTTGGCATGAAAATTAATGTGTGTGTAACGAAGA GGAAGGACAAACGATTGAAAAAAAGTACCAGTAAAGATTTAGTATTGGAT GGATACAGTTGTTATTAAAACGAAGCAGGTNGTACCAGTAAAGGATTTAG TATTGGATGGATACAGTTGTTATTAAAACGAAGAAGGTATTGATGAAggc tttcttgttgttttttttgtctacCAGTTTACCATAGAATGACAAGTGGT ATGGTATTGAGGGACTATAGATGTGGAAACCTGTCTaaaaccatagtcat tataaaaacactggtctggaacgCTTTTGTCTCATACCAATTTTCAAATG GGAAAACTACCCAATTGTGACGATTTAGTATCAAAAGGAAATGATATAGA CTTTCAGATCCATATGCATGGGCTTCAGTAACTAAACAGCTCTCATCTCA ATCTAACATAAAAAACTCTCGGAGTGCATCAAAATTTCTTATATTCGAGG TTATAGTGAGCAGAACTTTGTGGTCTAGTCACGAGTATAGAGAATAGAGG TCGAAAGATTAAGCAATGGTCAATGAAAAGGGTATAACTgtgaaaaagtt tcaaaatgtcACATTCAATCTGAATACAAGCTAAATTAATAAATGATCCA TTTCGAATAATTCAAAATATGAGTCATTCATTTCAGCTATTCATTTCTCA TAAAACAAAATGCTAATAATTTGCTTCACTCCATAAACCTTTTACCATAA GAACCGGAAAATCTTCGGTATGGAAAGCATGCTTACTTTAGAATGTAgag tttcacagaatttaatcatcaaaataattatttcatctttttaaataatt atgaTGGTGATTATATAATAACTTGATTTAGAGAGATCATCATCTCGAGG AACCCTAGACCAGCTTTCGTCAAGAAGGAATTTATGGAATTTGCTTATTc tataaaaaaatcaactttttataagaatttcaaAGCAATGAAAAGCTGGA CattcaaatttaatgaagaGACTCATTCAAAAACCACCTcctgcacgttt tttttataagaacaaactatataagaacataaggcttggatggtcaaaat ataaagaacactttaagaCTTTGAGGACTCTtaaaaaaccaattttctta agaaattgcacagAAAGACCCAAAGAAtagtaaaattaagaacattttaa gaacattctaaggcttaaaactgaaaaagttaagaacatccgaaggcttc aaaattttaatttttcttacaaaaaagcgtgtatcaaatgaatcaaaaat attcttctaGAGCAATcgagaaataaaaataaagttatTCAACTTAGCAC AAACTCTTcataaatgaattaaaaaataccaaatacAGTATACAAAAATC AAGAACTAGGGATTTAGCAAAGATACGTTCTGTTATTGAATTCAGTGGCA TTCTTATTGAGGTGGCATGAGAAATGTGTTTAGACTTTTATCAACGATTG CAACTAAAGAAGTGATTTTTACCAGGACGAATCTCACCAGACAAAACTTT CATCAATATCATCAAATACTGTTTTTAAACAACGTTCGACATTTAAGTGT AGCTGAACCAAGAAACTTAGCTAAGCCTATGGTTAGTATGGTATATATGT CTTTTGCGTTGAATGACCTTTAAATAATTGTTAATTTTTAACGAGTGAAA ATGCATGCTTTTCCTATAAGAATggaattttcccattttcttaTGGATAT TCTTGTAATACATGCCCCAAGCAAAAATAtcgtattttgtttttgttttg agcattgctggGGGATAATTAGCAATATTTGCTCgtaaaaatgcattaaa aatgacaATGATTGGTTCAGTGGCCGAATTCCATGAtgattttggccaat ttcaaaCAATCATTCGAAAATGCttatttttgaggatttttaagCATTTC ATTCAATACTCTTAATGTCCTGACCGAATAGTTTTCCAAATGTTTAAAGA GAGTGGATTTTTGATTAGCCTGGATGCTTCTTTAGATACTGAGTGGCGAA atgaatacacttttttatataagaaccagtaaaattttgttgaggctcgg ctgttcttattttttctcgGCACTTTGatcctcaaattgttcttaaattt cgttcttatttatagggtgtaattgaggtGTTTTAAGccttatacccaat ttttactactttgaccccttaATTGCTTTAAATtgagtaccttatcggcc ctttttacgccggcctaattttgggcttacgccaattaagGCCCAAATCC GGGGCCCaaataacgccaaaacttgtaaaaatcgctattcaggcttcaaa acagtaagtattagctaaaatttacattaaaatgtcatctttcagtatta aactgttgaaaattctattaaaaatcattgattttcgtGAAGTTTTGGAA ATGGAGTAAAAAATGGATAGCTTTCATCCTTTAATcatgcctaaaatcct ttaaattgagaaaaaatggtcaaaattaacgccgcttttaggtaaaattt gcaaaattttggcccttttacgccggcccttttaacaccggcccttatta cgccacgagcccaaaaacaACACCactaagggccggtgtaaaaagggccc aTAAGGTAATTTCAAGCTCaaagcgattttgagcctcattgttgttataa aattgttcttataaaaagagcaTGGTTTGGGCTATGCGTTTGAATTTCCC AACTCCAAATAACAGTTGATagcacagccaatcaaattttgctaTTCTTT CACTGGTCtcactttcttagaaaaaaatcgattaattttttataaCATTA AATTCGATAGAGAAATATAGAATATATAAATCGGAGTCAGAGATCGCACC CATCCTGCCTATCTAATTTATGATGGCATTTAAAGGTTTTACTTTTacgt aagtgttcccgtttcatatcaggcacatatttcatatcaatcagtgtctt gctattgttatattatgctgatataagtaattcctctttctgaccaatct tgctccacatccgtgtcaatccaatgtgaaaaagcttgtgaattaaaatt gacgagtaagcaaacggtatcactcttatttaaaaacaaaacctttaagt cttGACACTCACGTTTCTTTCAGGGCGGATGGTCTAAAATGTGTATAAAA GGTctcaattattttttgttatagCAATTTTTcctcttattattttttta tctttatttgaaattttgagtctcAGTGTATTTTTTAGCCAAAACCGAGC ATTGTTTTCTAATAGAAATAACGGCTTGAAAGTTTTAAACCCTGAGTCCA ATGAACTTGATTCcacaaaatcatatttcaacATGAAAATTTACACCACC CACCccctttttcaaaattcacataaaaaaacttgaaacgAAAACTTGTA AATGAAAAAGCTGTGTACACATAGAAGAAGAATGGGAAGGAAGGAACCCA CATGGTAACAAACTGCGAATAGCAACGAATTCTAGTTCAAAATTGCGAAA TTGTAAAATCAACAAATTTCGAAATCAAACTTGCTTTAAATGAATTATAT TTTGTTAATGAGTGGGTAGGGATAGGTAATGACACAACCTGGCACATAAA ATCTTTTGCGATTTTTCGTATTATAAATTGGCATTTTTCATTTCCATGTT CAGACAAGTTTGGATCGGATATGTACGCATCGAGTTCGTTTGATTGAAGT GCGCTGTACGAGAAATTTATCTATTCGGTTACAGCACAGCTTATTTGAcc tttggaactaatttttgagGTAAAATAAGAGTTTGAgagttagttcatct aatgtttccagctcacccaaatagagacttatacgcGTGCGTAATTTATC GTTATTTAAACCTCTAGTCGTTAAATAGTCACTGACCAGGTCGGGGTTTG GGACGGCAAAATATGTCTTTCTTTGATAGGTAGGGTTACTGTTAGGGTTT TTCGTTCTTGTTGTCGCTTTTTAGAtagtctggaaacgttagatgaacag tctctgACATGTGTTTGAATTTAAACCAGGAATGGCTCAGCATATCCTAA ATTCTTCACAAATTGCATGATCAAACTTTCCCGAAAATGTTTCGAGTCAG AGTAGAGGGCGTTAAAGGGGTGGTTAATTGTTTTGTCTGagaagtactct taggttccaaataaacgggggggttcgaataaacgggggggttggaaaat tttgtagatttcaataaatggggggacctaattgccgggggggttggaaa ttgtacttctgaaacccaaaaataaggtaaaaataggctaaaatcaggct atatagagcaaaataaggggccttctcttcgacagctcaaaatattctta gagattaataaacggggggtcctaataaggtccgggggggttggaaaatt ttcgaaaaattaacaagcgggggggcccgtttatttggaacctaagagta aagaAAGAAGGAATATGTTTATTGCAAATCCGCCGGagatcattttgaag aatttcgtTTGTTTTCATAAACATGAAGTAATACTCAAAGTAAAGTGAAA AGTTTATAACTACAATGTTACACAACTTTACTACGAATCtaaattaaaag ttttaatttgaaTTCACACATGGAAAATCTGCTTGGTACTCATCAAGCAT TTTAAGGTTGGTGACCTTTCCTGTTTTGTAGGAAGAAAAGTAAAACACAC AAGAATTTACTAAATTTGTTAtttaaaagttatgaaattTTAGGGTTAGG CTCAAAGTATCCTTGAAATCTTCTACAATCCCCCAACAAATATCTTGAGA CAGAAGATTTCGAAACATTTTTGGAAGATAAAAATCCGTCCCCCGGACCC CACTGTCAGTGTTGAGTCCGGAAATGGCCGAGAACTCAACGCTGACAGTG GGGGAAAGGGGGACCATGTGAAGTGTCTCAGATATAAATTGGGGGATTgt agttaaaggttttattttcatttaagtgttctcgtttcataccagacaca tatttcatatcagtacagtgtcttgctattggttatattatgctgatata agcaaaaaaaaatgttttcttttcctctttttgacaaatcttgctccaca tacacgtttttttttataagaacgtcaaaaatttttgaagccttcggatg ttcttagttttttggatttgaagcctaaaaatgttcttaaaatgttctta tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNtaagtctccaaagccttagaattttcttagaatg ttcttaaatttttgggcctcgaagccttatgttcttatatagtttgttct tataaaaaaaaaacgtgtacgtgtCAATCCATTGTTAAAAAGCTTgttaa ttaaaattgatgagtaagcaaacgatatcactcttatttaaaaacaaaac ctttaaataccATTCATTAGCCACCATTTGTAGTGAAGTACGTAATGAAG AATTtggaaacaaaaacaaacaatgattgtttattttgttgaagtttATG TTTGATGCTGGTCATGTGAGTGAGTAAGAAGGTAAACTGATTTCGAAAAT GAGAGATATAATCTTTACTAAATCTGTGCGGTCAAGAAATCAAGTGGCAA GTGACGATGGAAAAATCAAGGCAAAGGCACAAGGAGGCTGATCAAAAAAC CTTGTTGATTGTCAATTAGTTCAGGTACCAATCAAGCTAAATGTTTGTTG CCAATTTGGCAGCATGTACGGTGTAATACGGGAGGGCGTACAGTATGCTG GGCAAGCAACGCTAGTTTTAAATGAAGTGGGAAATCAAATTAACATTAAC AACCTAGAAGATTATCAGTCAAAAATGTTCCGACGAGTAGTTTTGTAGTA GTATAGGTTTGAATATTGATTGAAATATTCTGAGAAAAATTCGAAGAGTG TACCAGTAGAACAAAGATTTCAACAATGAGAAGAGATTTCGCAATCACGT GAGCTATTCAGCATGATAGataagattttcttttgaatgagATTTCACGA GATTTCTCTCAATCGGGTACAAAGGTCGCTTAGAATACTATACTATACTG TACGCTGTACTATTGATATAATGTTTTTCTCTACGACTAGTAGCTTGTGG GTGATAGTAGGCTGAAAACTTTGATGAAGTTGTTCAGTGTTTGAATCTTT CATGTTTGACcttgaaagttttgaaagttgaCCTTTGGAATTGTTATGAT CTGATGATATTCACTTTCCAACTTTCTGATTTGCGgaaaatttgttgttg ttgatgttaTGTAAACTGTTTACAAGTTAAATGTTGTTTTGTGTGCAACT ACTTAATACCGATAacgtaaagtgaaagagttgaAAATAATAACTTCAAG TTTGACGAACAAGTTTGTTGACATTATGCAATCTCTTTGGCAAAGCTCAT CCAACAATATAACGCTCTTTAGGCTTTATATCCCTCCATAATATAAAGGA TAAGAAAAGatcaaaaatttacattttggCATTAGCTTTTTAAAAGATAT CCATTATTCGTTTAATACTTGTCCTCATACAATGACCAAattttgtaatg tttgtaaATCATCAAAATTGGTTCATAAAAGACATCTTGATGTTTGATGA AAACAGCTTTTGGAAATTCTTTCTTATAGCAGGAGGTCTAATCGTCTAGA GGCCAGGGAGAATTATGTAGCTGACATTGATTTGATGTGTTGTGCTACCC AAACTATGATGTAGTAGAATACACCTGACGACCCTTAAAAAAGAGATTTG AAGAGCGTGGAGACTGGGTTGAAATGTACCAGGGAGGATTGACGTCAAAT GTCTATAGTCGCTGAATTGAATTGATAACACAGAATTTTGAAAGGATTCC TTCCTGGTAGGTCAACTCAACTAAGCCCCTTTGTGGCgtttaagaccatg ttcagatgTTACGGCTTCGCATAGCGCCGGTATGGCTTTCGTTACGGATA TAGAGCGTTCCGTTTTGGAACGATGTTGAATCGCAACATCTGAACATGGT CAAATAAGTGTATTAAATCCAATATCTTATTCAggcattttttcttcttt agatAAAGATGACGCAAGTAGCCACACCAAGCGATTACCAACAACCTACA ATCAACCCAAACAATGGTACTGAtaacacaacaacaacaaacacaaAGGA TTCAAAAATCTATATCCACACTGGCAATATTGCGAATTGGACCAATGTCA AATCACGACGATCCAATGAGATGCCAACAAATGAACTCTACCAATCGTTG TGTAGGACTATCACCAAACATGGGTCACAGCAATTAGGAGGTAAGTCGCC TGGaggttcatctaacgttatatggacgttagattcatgtgatattcatg acgtaatgttatctACGGAAATAATCTGGTTTTCGCCAGCAGTGGCAGAT TGGGGTgtttttccgtagaaaacattacgtaatgaatattATGAATTGAG GATTTCATAACTAGTCCTGAGCACATTTCTCTAACGGATCCAGACTTAAA CTAGACCTCTTGAAGGGGCTTGAACTTTCTTAAAGTCCGCTTGGTATTTA AAACGAACGGTTTGAGAGTTTCTGAAAAATCTGGATTCGACAAAAACACA GCCTCGGAATAATATATTTCTCAAGGCTTAGTTGTCTTTTACAATGTTAA TAATTGAATATAACATGGTAACTAAAATACTTCCCATAGGTTGGAATGAA GAGGAAATCCGTATTAATTGTACCAACACTGAGAAGATCGATAGCGTGGA ACGAGGTCTACTCAAAGTCActgctaaaatattcttacaaaaacTGGACA CAAAAAGCATGGTGAACTCTGTTAACTCAACATTGAAACAACTCGGTTTA CACTCCATTGATAGTCTATATCTAGCCTTACCACCGTTCGCAGAAAACCA ACCATTTGCTGAGACTATTTTACCACTTTGGGAAGAGATGGAGCGGTTCC GCGACGCCGGTCTTGCGACGCAAATCTCAACTTGTGATCTGGACCATGAG AAATTGAAAACGTTGGTTGAAATGGTCAAAATCAGACCGGAAGTGAATCA AGTCAACTTAACGTCTTGTTGTCACATGCCTGAAGATTTGGTACAATATG CTAAAGGTAAAatacaaaattcaattttttaaatctacagttgatgctct ctaattcgatcttcaaggaatAAGAGaacttatcgaataagggagcgtcg tttatgagagtttcttgttgacggggactttaaatctcatcgaataaggg agcctatcaaatagtagaacgtcgaattagagagcatcaactgtatcTGC CAATCTCGTTTTCAAATATCATCGCATAGGTGTTCATGGTCTTCATTACT TAATGTTTTATATGGGAAAACCCCGGCTTTtatagccagtagtggcaaac tTGTCAGAAGTTTTCTCTAACTCTAGCTTACATTTTTAAATTTGCTAACA ggcaaaaaccggggttttTCCGCAGagaacattacgtaatgaatataATG AATCTCAACACCATTAGACACATACTCTCGGACACCTTATAATTTTTCCC CGTccgctttttaatttttgggaaaatgtttttgaaagttccctcttttg ccctaattctgttTTATTAGcctatttttcaaattgttgatttcaattgt tctctttaatgacaacACGTGggtcgcgcaatgtttacatttcaatactt ttatgttcttttaatttctttcataGAAATCGGTATCGTTCTACACACGC ATGGCGATCAAGCTGTCATGTTACCAGATGAGAATGTCGAAGCACTCATC AACGTCCTCAAGCCAGACGATGACCGGACTTTTTCGACCGATTGGATTGT CCGTTATGCGGTTGTTGTTAAATGCCGGGGAGTCATCAAGTCTAAAGGTT ACATTGCAGCTATCGATGCTCTCACAAATACAGAGTAACCTATGTCAAAA TGACtcgtattgtttttttttaaatccaccGAAAAGCGAAAATCAAATCT TTTGAACATTGTACTATTCATCAATATTGATATTTGCTGAATGCCGGAAC GTGAAAACCAAATAAGGCAGtaccatattcaatttttctacTATTGAGTT TAACCAGAGGTAATATTTTCAGCATGGAAAGCAAAAGGCTAATCATTCGA ATTTCAGAAACCTTTTGCGAGTAGAGAGCTTTGAATTTCGTATAAATCTT TAGCGATCAGATGATCGATTTTTCGGCTGTTTCTACTCAAAGGATTATAC CAAATAAATGGAGCGAGACTTCATTCAAACTCAAGTACTTTTttatattg ggctcttccagaaaatacccgtgcatggggggggggggggggggtaggat atagtgtccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039002XLOC_039002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062212-exon-scaffold_362-1491911889:768172..768399TCONS_00062212-exon-scaffold_362-1491911889:768172..768399Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1510915933:768172..768399TCONS_00062212-exon-scaffold_362-1510915933:768172..768399Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1575043694:768172..768399TCONS_00062212-exon-scaffold_362-1575043694:768172..768399Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1491911889:775574..775811TCONS_00062212-exon-scaffold_362-1491911889:775574..775811Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1510915933:775574..775811TCONS_00062212-exon-scaffold_362-1510915933:775574..775811Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1575043694:775574..775811TCONS_00062212-exon-scaffold_362-1575043694:775574..775811Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1491911889:776211..776627TCONS_00062212-exon-scaffold_362-1491911889:776211..776627Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1510915933:776211..776627TCONS_00062212-exon-scaffold_362-1510915933:776211..776627Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1575043694:776211..776627TCONS_00062212-exon-scaffold_362-1575043694:776211..776627Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1491911889:777248..777881TCONS_00062212-exon-scaffold_362-1491911889:777248..777881Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1510915933:777248..777881TCONS_00062212-exon-scaffold_362-1510915933:777248..777881Clytia hemisphaericaexon
TCONS_00062212-exon-scaffold_362-1575043694:777248..777881TCONS_00062212-exon-scaffold_362-1575043694:777248..777881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:768172..777881 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0271237 0 0 0 53.819 43.513 5.25697 4.43914 1.26579 4.412 0.842168 1.21569 3.27454 1.35163 1.568 1.78006 1.32447 1.32591 3.98129 9.8907 2.11113 0 0.900166 2.22784 4.92129 4.18867 11.807 16.465 1.81668 1.62715
Blast
BLAST of TCONS_00062212 vs. Swiss-Prot (Human)
Match: GSH0 (Glutamate--cysteine ligase regulatory subunit OS=Homo sapiens GN=GCLM PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.700e-35
Identity = 84/254 (33.07%), Postives = 139/254 (54.72%), Query Frame = 1
Query:  334 IYIHTGNIANWTNVKSRRSNEMPTNELYQSLCRTITKHGSQQLGGWNEEEIR-----INCT---NTEKIDSVERGLLKVTAKIFL-QKLDTKSMVNSVNSTLKQLGLHSIDSLYLALPPFAENQPFA-ETILPLWEEMERFRDAGLATQISTCDLDHEKLKTLVEMVKIRPEVNQVNLTSCCHMPEDLVQYAKEIGIVLHTHGDQAVMLPDENVEALINVLKPD-DDRTFSTDWIVRYAVVVKCRGVIKSKGYI 1062
            +++ TGN+ NW  ++ ++     + EL+  + +T+ +  SQ     N + +R     + CT     EKI+  ER  +KV+AK+F+ +   + S  ++V+     LG+  +DS+ +A PP  +    + E + P WEE+E    +     I T DLD  +L+ L +  +++P  NQVNL SCC MP DL  +AK+  I L TH D   +L + + +  +    PD     +   W++RY+V+VK RG+IKSKGYI
Sbjct:   18 LHLQTGNLLNWGRLR-KKCPSTHSEELHDCIQKTLNEWSSQI----NPDLVREFPDVLECTVSHAVEKINPDEREEMKVSAKLFIVESNSSSSTRSAVDMACSVLGVAQLDSVIIASPPIEDGVNLSLEHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQVKPNSNQVNLASCCVMPPDLTAFAKQFDIQLLTHNDPKELLSEASFQEALQESIPDIQAHEWVPLWLLRYSVIVKSRGIIKSKGYI 266          
The following BLAST results are available for this feature:
BLAST of TCONS_00062212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSH02.700e-3533.07Glutamate--cysteine ligase regulatory subunit OS=H... [more]
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