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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062211 ID=TCONS_00062211|Name=TCONS_00062211|organism=Clytia hemisphaerica|type=transcript|length=1690bp
tttGCGGTTACGGCATTTTGGTGTGAGTTTTTCAGGCGACATGATTGCAT
CAATCTTATTAGCTGTACCCGGTTTCTTTTTTATATGGATGTTAATCACT
TATGTGGAACATTTGATCAGTTTGAGAAAATATCCGAAAGGACCATTCCC
TTTACCGCTGGTTGGTAATCTTTTGATGTTGAGCAAAACACCGTATTTGG
ATTTCATTGAAATTGGAAAGCGATATGGAGATGTTTTTAGTTTGAGTCTA
GGAATGACTCGTATAGTCATTATCAACTCCTACACCAATATCAAAGAAGC
ATTGATCACGCGAGGAACTGATTTTGCCGGACGTCCGACAGATAGTATCG
TCAACCGTATTCCATCCAATAATTTCACCAGTGTCATATCCTTTGATTAC
tccaaatcttttgttttcgtTCGGAAACTTGCCTTCAAGAGTCTTCACTT
GTATGGAGCTGGTATGAAGAATATTGAAGACATTGTGATTGAAGAAGTCG
AAAAGATGTGCTCCATACTCACCAAAGAAGCTGGAAAGCCAGTCCCAATC
AGACATCATCTAGGAAATTCTCTGGTCAACACCATATGTCATCTTTGCTT
CAGTAAGAAATACGATTCACACGATCCTGAATTTCAACAGATTCTGGAAT
CCATGAGAATGATTATCCAGGGTCTAGCACCTGGTTAAGCCATCTCCATA
TTCCCCTGGCTAAAATACCTACCACATAccaagaaattcaaagaattacT
CAAAGGTTCTGAAATACGCGATTCAATCACTCGTAAATTCTTTGAAGAAC
ACATCCAAACTTTCAATCCAGAGAAATTACGAGATTTGACAGATAATTTG
TTGTACTTGTCACAAAACAAGGAGATGTGGCAGGATGCTGGTTTTGAAAA
AGTCACACAACTTCAATTGGAATCGATCATCAATTCAATCTTTGTTGCTG
GCATTGAAACCTCTTTATCCACTCTCCGCTGGATGTTGATCTATTTATTT
CACaatccaaaaattcaaaacaagatCTACAATGAATTATACACAAACCT
TGGACCTAAGCATCAAATCACTACTGAAGATATGAGATCATTACCCTACA
CTCAAGCTGTTCTCCATGAAACCAACCGGTATGCGTCTACGCTACCTCTT
AGCATACCACACAAGACGACTGTCGATACTTCAGTTGCCGGCTTCTCAGT
ACCCAAAGGAACACAAGTCCTTTTCAACTTATACAGCATGCATCACGACC
CAACCCATTGGGATGAACCAGAGAAGTTTAAACCAGAACGTTGGCTCAAT
CCCGATGGTAAtctcaagaaagaaaaagttagCCATTATCTACCCTTCTC
GACAGGTACGCGGGTATGCCTTGGAGAGAGGTTAGCTAAGATGCAAATGT
TTTTGATTGTCACCAAATTGTTTTTAACGTTCGAAGTGGAACTTGCTCCT
GGAGAAAAGGTGCCAGATATGAAAGAAGGCAACATTGGGATTACCCTGGA
ACCGAGAGATGACTTCAAAGTGATTCTCAAACCCCGAAAACATTGAAACC
GAACCCTAGCCTGAACCATAATGTCCAAAAAACGacataaaaaatatatt
agaaaaCAGTTATGTAATACTATTAGGTGGAATTCAGATTTTTTACTGCG
GCAAATGATTCGGAGATCTTCTTCACAAGTTGAATCGTAT Run BLAST on NCBI protein sequence of TCONS_00062211-protein >TCONS_00062211-protein ID=TCONS_00062211-protein|Name=TCONS_00062211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
LRLRHFGVSFSGDMIASILLAVPGFFFIWMLITYVEHLISLRKYPKGPFP
LPLVGNLLMLSKTPYLDFIEIGKRYGDVFSLSLGMTRIVIINSYTNIKEA
LITRGTDFAGRPTDSIVNRIPSNNFTSVISFDYSKSFVFVRKLAFKSLHL
YGAGMKNIEDIVIEEVEKMCSILTKEAGKPVPIRHHLGNSLVNTICHLCF
SKKYDSHDPEFQQILESMRMIIQGLAPG Run BLAST on NCBI transcript from alignment at scaffold_362:746709..750104+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062211 ID=TCONS_00062211|Name=TCONS_00062211|organism=Clytia hemisphaerica|type=transcript|length=3396bp|location=Sequence derived from alignment at scaffold_362:746709..750104+ (Clytia hemisphaerica)
tttGCGGTTACGGCATTTTGGTGTGAGTTTTTCAGGCGACATGATTGCAT
CAATCTTATTAGCTGTACCCGGTTTCTTTTTTATATGGATGTTAATCACT
TATGTGGAACATTTGATCAGTTTGAGAAAATATCCGAAAGGACCATTCCC
TTTACCGCTGGTTGGTAATCTTTTGATGTTGAGCAAAACACCGTATTTGG
ATTTCATTGAAATTGGAAAGCGATATGGAGATGTTTTTAGTTTGAGTCTA
GGTAAGTGTGTTTGCTTTCTCCTAGTACAGTGGAGTCTCACTAACTCAAG
ATAAATTTTTTCGAGCTAGAAGGAAATCTCGAGTAATGGAAATTGGTTTG
TAAGGCATCTTTGCCTGATGAGTTAAGGAGACAATTGAGTTATAAATAAG
TTCGAGTTGcaatttaaaattaattaacaaattaaaattttctcattcag
agaaaatttaccaagttcaattatttttgaacCCACTCAATTCATAAAGC
ATCATTAtttaaaagtatcaatttttgagaaaaatgaatattCTGTTCTA
AACTCTCGAGAAACATGGCCCCGAAAAGACAGAAAGAAATTTGTCTGGAA
AATACCAAAATTGGGTGGTCTCTGTGTCAAAATGTACCTAAAATTTTTAG
TACATaggtactaaaataccactttTCTAAAATGGGGTGGTGGTATGCAA
GAAAttctcgaaaatccttttaataCACATATTTGTCCAAGTTGTCCTAA
TACAACGAATTATTTAATTCtacatttttatccaacatgCTGCGAACAAT
ATTgcttctttttcagaaaaaattttttctgtctgtttgttaaatgaaaa
ttgaagtttGGCCAAAAGCTTTTGTACAAGAGAAGAtaatataccgggtg
acccacgaaaaagttcaaaagtgttttttacacttttcgaaaagtgaatt
ttgactttaaaagctcataagtagagaacaagttggtcaaatttgaaaag
tgatggctcaaattttaagttaggatatctactttctaaatatcaaaact
ccaagcactttaggacatttgttcggcctcaagacgtcgggaaacgtctg
aactttttcgtgggtcacccggtacataTAATCTCACTGTAAGTAATCTC
AATTTTGTAGGAATGACTCGTATAGTCATTATCAACTCCTACACCAATAT
CAAAGAAGCATTGATCACGCGAGGAACTGATTTTGCCGGACGTCCGACAG
ATAGTATCGTCAACCGTATTCCATCCAATAATTTCACCAGTGTCATATCC
TTTGATTACtccaaatcttttgttttcgtTCGGAAACTTGCCTTCAAGAG
TCTTCACTTGTATGGAGCTGGTATGAAGAATATTGAAGACATTGTGATTG
AAGAAGTCGAAAAGATGTGCTCCATACTCACCAAAGAAGCTGGAAAGCCA
GTCCCAATCAGACATCATCTAGGTTGGTTTCAATTTATTTTCCCTTTTAC
Ttctattttgaaagaaagtcgtttgtctttttcttaaagattttattttt
acataagttttCCTGTTTCAtttcagacacatatttcatattgtctgcct
attgttatattatgctgatataaacaaagaaatgtttttcttttcctctt
tttgaccaatcttgccccacatccgtgtcaattcaatttgaaaaagcttg
taaattaaaactgatgagtaagcaaacgatatcactcttatttaaaaaca
aagcctTTAAGCATATTTTTCGCTTTTGGAATAGGATAAGGTGGTTTTGG
TCAGGGGTTCAATATTTATAACGGATAGTTTCCTTGTACctcaaatgaaa
agaaagattcttagtttatatatattttttagcgCATCGCAAATCCGCCA
CTGCACGGACTGTAAAGCTGGGCGATGCATCCAACATTATTGTTGCATGA
AATGTGCAAGTCATAATATTgcaactttttaataaaaatggtggaaatca
tgttggatgaagtttgagcaccaaacatttcatccaacatttttatgaaa
ttaacGTCACCTTCATGTTGCTTCcaatgtttgacgtttttgtgcAAATG
ACTTTTCGTGCAACTTCGATTTTTTCCACGTGACTTTCATCCAACATTTC
GTCTAACAAAGAATTTGgaatgttggatcaaatgtcGGATGCATTTGCGC
CGCCTTAAGGTAGGAAGCTTCATTATTTTACCTGCTCAACATCATAGAAA
TACTTCTTTTCATTCCCAGGAAATTCTCTGGTCAACACCATATGTCATCT
TTGCTTCAGTAAGAAATACGATTCACACGATCCTGAATTTCAACAGATTC
TGGAATCCATGAGAATGATTATCCAGGGTCTAGCACCTGGTTAAGCCATC
TCCATATTCCCCTGGCTAAAATACCTACCACATAccaagaaattcaaaga
attacTCAAAGGTTCTGAAATACGCGATTCAATCACTCGTAAATTCTTTG
AAGAACACATCCAAACTTTCAATCCAGAGAAATTACGAGATTTGACAGAT
AATTTGTTGTACTTGTCACAAAACAAGGAGATGTGGCAGGATGCTGGTTT
TGAAAAAGTCACACAACTTCAATTGGAATCGATCATCAATTCAATCTTTG
TTGCTGGCATTGAAACCTCTTTATCCACTCTCCGCTGGATGTTGATCTAT
TTATTTCACaatccaaaaattcaaaacaagatCTACAATGAATTATACAC
AAACCTTGGACCTAAGCATCAAATCACTACTGAAGATATGAGATCATTAC
CCTACACTCAAGCTGTTCTCCATGAAACCAACCGGTATGCGTCTACGCTA
CCTCTTAGCATACCACACAAGACGACTGTCGATACTTCAGTTGCCGGCTT
CTCAGTACCCAAAGGAACACAAGTCCTTTTCAACTTATACAGCATGCATC
ACGACCCAACCCATTGGGATGAACCAGAGAAGTTTAAACCAGAACGTTGG
CTCAATCCCGATGGTAAtctcaagaaagaaaaagttagCCATTATCTACC
CTTCTCGACAGGTACGCGGGTATGCCTTGGAGAGAGGTTAGCTAAGATGC
AAATGTTTTTGATTGTCACCAAATTGTTTTTAACGTTCGAAGTGGAACTT
GCTCCTGGAGAAAAGGTGCCAGATATGAAAGAAGGCAACATTGGGATTAC
CCTGGAACCGAGAGATGACTTCAAAGTGATTCTCAAACCCCGAAAACATT
GAAACCGAACCCTAGCCTGAACCATAATGTCCAAAAAACGacataaaaaa
tatattagaaaaCAGTTATGTAATACTATTAGGTGGAATTCAGATTTTTT
ACTGCGGCAAATGATTCGGAGATCTTCTTCACAAGTTGAATCGTAT Coding sequence (CDS) from alignment at scaffold_362:746709..750104+ >TCONS_00062211 ID=TCONS_00062211|Name=TCONS_00062211|organism=Clytia hemisphaerica|type=CDS|length=2061bp|location=Sequence derived from alignment at scaffold_362:746709..750104+ (Clytia hemisphaerica)
ttGCGGTTACGGCATTTTGGTGTGAGTTTTTCAGGCGACATGATTGCATC
AATCTTATTAGCTGTACCCGGTTTCTTTTTTATATGGATGTTAATCACTT
ATGTGGAACATTTGATCAGTTTGAGAAAATATCCGAAAGGACCATTCCCT
TTACCGCTGGTTGGTAATCTTTTGATGTTGAGCAAAACACCGTATTTGGA
TTTCATTGAAATTGGAAAGCGATATGGAGATGTTTTTAGTTTGAGTCTAG
GAATGACTCGTATAGTCATTATCAACTCCTACACCAATATCAAAGAAGCA
TTGATCACGCGAGGAACTGATTTTGCCGGACGTCCGACAGATAGTATCGT
CAACCGTATTCCATCCAATAATTTCACCAGTGTCATATCCTTTGATTACt
ccaaatcttttgttttcgtTCGGAAACTTGCCTTCAAGAGTCTTCACTTG
TATGGAGCTGGTATGAAGAATATTGAAGACATTGTGATTGAAGAAGTCGA
AAAGATGTGCTCCATACTCACCAAAGAAGCTGGAAAGCCAGTCCCAATCA
GACATCATCTAGGAAATTCTCTGGTCAACACCATATGTCATCTTTGCTTC
AGTAAGAAATACGATTCACACGATCCTGAATTTCAACAGATTCTGGAATC
CATGAGAATGATTATCCAGGGTCTAGCACCTGGTTAAttGCGGTTACGGC
ATTTTGGTGTGAGTTTTTCAGGCGACATGATTGCATCAATCTTATTAGCT
GTACCCGGTTTCTTTTTTATATGGATGTTAATCACTTATGTGGAACATTT
GATCAGTTTGAGAAAATATCCGAAAGGACCATTCCCTTTACCGCTGGTTG
GTAATCTTTTGATGTTGAGCAAAACACCGTATTTGGATTTCATTGAAATT
GGAAAGCGATATGGAGATGTTTTTAGTTTGAGTCTAGGAATGACTCGTAT
AGTCATTATCAACTCCTACACCAATATCAAAGAAGCATTGATCACGCGAG
GAACTGATTTTGCCGGACGTCCGACAGATAGTATCGTCAACCGTATTCCA
TCCAATAATTTCACCAGTGTCATATCCTTTGATTACtccaaatcttttgt
tttcgtTCGGAAACTTGCCTTCAAGAGTCTTCACTTGTATGGAGCTGGTA
TGAAGAATATTGAAGACATTGTGATTGAAGAAGTCGAAAAGATGTGCTCC
ATACTCACCAAAGAAGCTGGAAAGCCAGTCCCAATCAGACATCATCTAGG
AAATTCTCTGGTCAACACCATATGTCATCTTTGCTTCAGTAAGAAATACG
ATTCACACGATCCTGAATTTCAACAGATTCTGGAATCCATGAGAATGATT
ATCCAGGGTCTAGCACCTGGTTAAttGCGGTTACGGCATTTTGGTGTGAG
TTTTTCAGGCGACATGATTGCATCAATCTTATTAGCTGTACCCGGTTTCT
TTTTTATATGGATGTTAATCACTTATGTGGAACATTTGATCAGTTTGAGA
AAATATCCGAAAGGACCATTCCCTTTACCGCTGGTTGGTAATCTTTTGAT
GTTGAGCAAAACACCGTATTTGGATTTCATTGAAATTGGAAAGCGATATG
GAGATGTTTTTAGTTTGAGTCTAGGAATGACTCGTATAGTCATTATCAAC
TCCTACACCAATATCAAAGAAGCATTGATCACGCGAGGAACTGATTTTGC
CGGACGTCCGACAGATAGTATCGTCAACCGTATTCCATCCAATAATTTCA
CCAGTGTCATATCCTTTGATTACtccaaatcttttgttttcgtTCGGAAA
CTTGCCTTCAAGAGTCTTCACTTGTATGGAGCTGGTATGAAGAATATTGA
AGACATTGTGATTGAAGAAGTCGAAAAGATGTGCTCCATACTCACCAAAG
AAGCTGGAAAGCCAGTCCCAATCAGACATCATCTAGGAAATTCTCTGGTC
AACACCATATGTCATCTTTGCTTCAGTAAGAAATACGATTCACACGATCC
TGAATTTCAACAGATTCTGGAATCCATGAGAATGATTATCCAGGGTCTAG
CACCTGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062211-exon-scaffold_362-1491911889:746709..746959 | TCONS_00062211-exon-scaffold_362-1491911889:746709..746959 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1510915933:746709..746959 | TCONS_00062211-exon-scaffold_362-1510915933:746709..746959 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1575043694:746709..746959 | TCONS_00062211-exon-scaffold_362-1575043694:746709..746959 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1491911889:747869..748180 | TCONS_00062211-exon-scaffold_362-1491911889:747869..748180 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1510915933:747869..748180 | TCONS_00062211-exon-scaffold_362-1510915933:747869..748180 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1575043694:747869..748180 | TCONS_00062211-exon-scaffold_362-1575043694:747869..748180 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1491911889:748978..750104 | TCONS_00062211-exon-scaffold_362-1491911889:748978..750104 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1510915933:748978..750104 | TCONS_00062211-exon-scaffold_362-1510915933:748978..750104 | Clytia hemisphaerica | exon |
| TCONS_00062211-exon-scaffold_362-1575043694:748978..750104 | TCONS_00062211-exon-scaffold_362-1575043694:748978..750104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:746709..750104 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00062211 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 1.323e-85 Identity = 156/476 (32.77%), Postives = 256/476 (53.78%), Query Frame = 2
Query: 128 KYPKGPFPLPLVGNLLMLSKTPYL--DFIEIGKRYGDVFSLSLGMTRIVIINSYTNIKEALITRGTDFAGRPTDSIVNRIPSNNFTSVISFDYSKSFVFVRKLAFKSLHLYGAGMKNIEDIVIEEVEKMCSILTKEAGKPVPIRHHLGNSLVNTICHLCFSKKYDSHDPEFQQILESMRMIIQGLAPG*AISIFPWLKYLPHTKKFKELLKGSEIRDSITRKFFEEHIQTFNPEKLRDLTDNLLYL---SQNKEMWQDAGFEKVTQLQLESIINSIFVAGIETSLSTLRWMLIYLFHNPKIQNKIYNELYTNLGPKHQITTEDMRSLPYTQAVLHETNRYASTLPLSIPHKTTVDTSVAGFSVPKGTQVLFNLYSMHHDPTHWDEPEKFKPERWLNPDGNLKKEKVSHYLPFSTGTRVCLGERLAKMQMFLIVTKLFLTFEVELAPGEKVPDMKEGNIGITLEPRDDFKVILKPRK 1540
KYPK LPLVG+L L + ++ +F ++ K+YG ++S+ +G VI+ + KE LI +G DF+GRP + ++ I SNN + D + R+LA + L+ G + +E I+ +E+ +C +L G+ + I + ++ N I +CF+ Y + DPE I II L+ + + PWLK P+ K ++L +IR+ + K E + + F + + ++ D L+ S N D E ++ + + I IF AG+ET+ S ++W L +L HNP+++ K+Y E+ N+G T D L +A + E R P+ IPHK VD+S+ F+V KGT+V+ NL+++HH+ W +P++F PER+LNP G YLPF G R C+GE LA+ ++FLI+ L F++E+ ++P + EG I + D FKV +K R+
Sbjct: 26 KYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLD-IASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSL-EG-IPKVVFLIDSFKVKIKVRQ 497
The following BLAST results are available for this feature:
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