TCONS_00062205 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062205
Unique Name	TCONS_00062205
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	652

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_362:729376..732322+
coding sequence from alignment at scaffold_362:729376..732322+

transcript sequence

>TCONS_00062205 ID=TCONS_00062205|Name=TCONS_00062205|organism=Clytia hemisphaerica|type=transcript|length=652bp
TTAGAATctttagaaaattgaaaataaaagaaataataaatgttttcaag
tgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGTAGACGTAATCGGT
TTGATTATTTACAATCTTTGGTCACTGAATTTCAAGATACTGATAATGAA
GAATCAAAACTGCAAATACTGGCCAACCTTGGTAACTTTGCTTACGACCC
CATCAACTTCAATCATCTGCGGGAACTGAATGTTGTTGATTTATTCATCG
ATATGCTAtctgaaaacaatgaaaaattcgTAGAATTTGGAATGGCTGGT
TTGTGTAACCTCTGTGTTGAGTCAACAAATAGAGACCATATCATTAAGAA
TGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGCACTAATGAAGAAA
TAGTGTTGAATGCCATGACAACACTCATATATTTAGTCACACCAGCCACC
AGGAAAGACATCATAACAGAAGAAATTGTGGATTGCATGAAACAATTGAA
GACCTCAACAAATCCAAGATTGAAAAATCTTGCTACCATTTTCCTACAGC
TGATACCCGTCAAATCAACCTATCTAATCAACTCTAACTGACTACTTTAT
AAAGTTTGCGGCTTATGAACAGGAGTTAAAAGGGATACCATGAGCAGAAG
AN

Run BLAST on NCBI

protein sequence of TCONS_00062205-protein

>TCONS_00062205-protein ID=TCONS_00062205-protein|Name=TCONS_00062205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MFSSEKYIKDQREKSGRRNRFDYLQSLVTEFQDTDNEESKLQILANLGNF
AYDPINFNHLRELNVVDLFIDMLSENNEKFVEFGMAGLCNLCVESTNRDH
IIKNEGVDAIMQCFSSTNEEIVLNAMTTLIYLVTPATRKDIITEEIVDCM
KQLKTSTNPRLKNLATIFLQLIPVKSTYLINSN

Run BLAST on NCBI

transcript from alignment at scaffold_362:729376..732322+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062205 ID=TCONS_00062205|Name=TCONS_00062205|organism=Clytia hemisphaerica|type=transcript|length=2947bp|location=Sequence derived from alignment at scaffold_362:729376..732322+ (Clytia hemisphaerica)
TTAGAATctttagaaaattgaaaataaaagaaataataaatgttttcaag
tgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGTAGACGTAATCGGT
TTGATTATTTACAATCTTTGGTCACTGAATTTCAAGATACTGATAATGAA
GGTGAGAGTTGGATACAGGGGGATTTGTCTGCCTGATTTCTAATAGTTGA
ATGtaacaatgaaaatattataaagGTCTGGACGAGGTGTTAAATGTGCC
TGTTTTGTACTCGGAGATaacaacaaaaaaacgtaaattttatgtTTCTA
TATTAGTTTACGTAACCTTTTGGATACACTGAAATTAGAACTTGTGATTT
GACGAATCTTACAGCAGTTATTCGTATCATTCATGATTAGGAAACCTTTG
GCATTCATGATTAGGAAACCTTTGGCATTCAACTGTTTATTTGCAATATC
GCTTTTAACGGAGTAACTTAATTTCGAAATTTCTGTGGctgttatttttt
cttttggatGATAACCTTTAAGCTTTATGTAATGTTTGATGAAAAGTTGG
TGAtggaaaaaacaatttgaaaatttaagacACAAGGAGTTATGATTGTC
ATGTATAATCTCCTGAATTATCATAAACTTGACTCATCAAATGAAATTTT
GTTCTTTTAGAATCAAAACTGCAAATACTGGCCAACCTTGGTAACTTTGC
TTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAATGTTGTTGATT
TATTCATCGGTAAATTCTAAATTGTGTGATTTATttagtttaaaaaataa
tagaaCATAATGCTGTGAAATATATTTTAGATAGAGTTTCCATCTTTTCA
TTCTGAAGTGAAAGAATTCCAGATTTCATTTTGGAACAAATTTACTATAT
ACTGTATTATACACTGTAACACAGGATTGTTTCTGCCCTCACATTtcatt
ttaacttattttaacTCAGATTTTTTCTTACAGATATGCTAtctgaaaac
aatgaaaaattcgTAGAATTTGGAATGGCTGGTTTGTGTAACCTCTGTGT
TGGTTGGTAACTTATCTTGTATTCAATCATATTTGATTTATCTTATAATT
TAGTTTATCTTATAAACTGGATTCTATCCACCTACAATTGGGTGTGTTAT
ATCTCCCTAAGCTTGCCAAAAATGTGTCTGACATGCACTTTCAGATTTAA
TAAGATGTCACGGAACTCCAGGCTCGGCCCCCTACTGTGCTATACATTTT
AACTTCGTTTTCATTCTTTGTTTCAGAGTCAACAAATAGAGACCATATCA
TTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGGTTAGCC
GTAATGTTTTTTgaattgttaatttttttaccaaagatTACTTTAATCAT
TTCAAAATGTCCGTAtgtaataagaatttttttttctccaaaaactCTCC
AATCTAGAATTATTGTAATCATTCAAATCTTCACTCTTTCTTATAGCACT
AATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATATTTAGTCAC
ACCAGCCACCAGGAAAGGTAAAATAGCCATCACCTCCTCTACTAAATCTC
AGATGAGATGATAAGACGTGTAACTTCAGTCCAAGGTTATtcaaaggctc
ctctttcaatTGTTGTCCACCAGAAGAGAGGGGATGATCTCACTCTTTCT
CCTACAGTGTCTATTGTTGACCTTTCTCTGTAGTTTCCAAGCACAAAACT
ATTAAGTCATTAGTAAGGTCTTACTGACCCTTATAACCCCTGAACTCAAC
TAATTATATCCGCAATCCTTGTTTAGAGTTGTATTAAagttgtattcatg
atatgcaccgctgcaatgtcttctgacatcacggaaccaattcatgatat
gcaccactgcaatgacttcacgaaattatgcaatttttctgtatttgttc
cacccaatacgtctttttttctattgtttaagtgacgtatcgggttgaac
tttttgaaaattctcagaagactctccagtggtgcatatcatgaatagct
cattggttgtaagtgacgtaaaatcagtcaatacgtcacactatcaacca
atcagctattgggtggaatggaagacattgcaatggtgcatatcatgaat
actctAATGGTAGTACTTCGCAATGTACAATTAGGGTAACTCAGATCATA
GATTTTGTTTTGCTgcatattatattattttgaacCCTTAATTTGACTCA
TTGTCAccattgaaatttgatttttaatcaaatttacTTCATCTGTTTTA
AGACATCATAACAGAAGAAATTGTGGATTGCATGAAACAATTGAAGACCT
CAACAAATCCAAGATTGAAAAATCTTGCTACCATTTTCCTACAGGTATAG
CCTTTTTACCAAACCATTTATTATACAATTTGAAAGTGCCAAACCACTAA
AACGGCCTAGAGATGACTAAAAGAGCTACTTCACAGAGCTATGATTTTTT
ATGTAAGAAAATTATGGAGAATCTGAACACAGATTTGAAATCATTAAGtt
ttaaatattctaaaaaGTATGATGTCATTATTTTTGAACCAGTAGGTTCA
ATCATCTTCAATTTAGACTTTATAATGATCTTAAATCTATTAGATAATTC
TCCTCgagaatatctttttaacggtACATAACTTTCTAACATGGCGTAGA
GGAGTGCTGAGGTATTGTTAAAATTAAAGTGTCAACATATTTCAgacttt
atttttgaattcactttattttatcaaaattcctTCTGACTTCAGGATAA
TTGCCATGGTTGATGAAGATAACTCAGGAGGTTTAATTTTTCAGCTGATA
CCCGTCAAATCAACCTATCTAATCAACTCTAACTGACTACTTTATAAAGT
TTGCGGCTTATGAACAGGAGTTAAAAGGGATACCATGAGCAGAAGAN

Coding sequence (CDS) from alignment at scaffold_362:729376..732322+

>TCONS_00062205 ID=TCONS_00062205|Name=TCONS_00062205|organism=Clytia hemisphaerica|type=CDS|length=3864bp|location=Sequence derived from alignment at scaffold_362:729376..732322+ (Clytia hemisphaerica)
atgttttcaagtgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGTAG
ACGTAATCGGTTTGATTATTTACAATCTTTGGTCACTGAATTTCAAGATA
CTGATAATGAAGAATCAAAACTGCAAATACTGGCCAACCTTGGTAACTTT
GCTTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAATGTTGTTGA
TTTATTCATCGATATGCTAtctgaaaacaatgaaaaattcgTAGAATTTG
GAATGGCTGGTTTGTGTAACCTCTGTGTTGAGTCAACAAATAGAGACCAT
ATCATTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGCAC
TAATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATATTTAGTCA
CACCAGCCACCAGGAAAGACATCATAACAGAAGAAATTGTGGATTGCATG
AAACAATTGAAGACCTCAACAAATCCAAGATTGAAAAATCTTGCTACCAT
TTTCCTACAGCTGATACCCGTCAAATCAACCTATCTAATCAACTCTAACT
GAatgttttcaagtgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGT
AGACGTAATCGGTTTGATTATTTACAATCTTTGGTCACTGAATTTCAAGA
TACTGATAATGAAGAATCAAAACTGCAAATACTGGCCAACCTTGGTAACT
TTGCTTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAATGTTGTT
GATTTATTCATCGATATGCTAtctgaaaacaatgaaaaattcgTAGAATT
TGGAATGGCTGGTTTGTGTAACCTCTGTGTTGAGTCAACAAATAGAGACC
ATATCATTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGC
ACTAATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATATTTAGT
CACACCAGCCACCAGGAAAGACATCATAACAGAAGAAATTGTGGATTGCA
TGAAACAATTGAAGACCTCAACAAATCCAAGATTGAAAAATCTTGCTACC
ATTTTCCTACAGCTGATACCCGTCAAATCAACCTATCTAATCAACTCTAA
CTGAatgttttcaagtgaaaaatatatcaaagaTCAACGTGAGAAAAGTG
GTAGACGTAATCGGTTTGATTATTTACAATCTTTGGTCACTGAATTTCAA
GATACTGATAATGAAGAATCAAAACTGCAAATACTGGCCAACCTTGGTAA
CTTTGCTTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAATGTTG
TTGATTTATTCATCGATATGCTAtctgaaaacaatgaaaaattcgTAGAA
TTTGGAATGGCTGGTTTGTGTAACCTCTGTGTTGAGTCAACAAATAGAGA
CCATATCATTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTCTCAA
GCACTAATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATATTTA
GTCACACCAGCCACCAGGAAAGACATCATAACAGAAGAAATTGTGGATTG
CATGAAACAATTGAAGACCTCAACAAATCCAAGATTGAAAAATCTTGCTA
CCATTTTCCTACAGCTGATACCCGTCAAATCAACCTATCTAATCAACTCT
AACTGAatgttttcaagtgaaaaatatatcaaagaTCAACGTGAGAAAAG
TGGTAGACGTAATCGGTTTGATTATTTACAATCTTTGGTCACTGAATTTC
AAGATACTGATAATGAAGAATCAAAACTGCAAATACTGGCCAACCTTGGT
AACTTTGCTTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAATGT
TGTTGATTTATTCATCGATATGCTAtctgaaaacaatgaaaaattcgTAG
AATTTGGAATGGCTGGTTTGTGTAACCTCTGTGTTGAGTCAACAAATAGA
GACCATATCATTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTCTC
AAGCACTAATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATATT
TAGTCACACCAGCCACCAGGAAAGACATCATAACAGAAGAAATTGTGGAT
TGCATGAAACAATTGAAGACCTCAACAAATCCAAGATTGAAAAATCTTGC
TACCATTTTCCTACAGCTGATACCCGTCAAATCAACCTATCTAATCAACT
CTAACTGAatgttttcaagtgaaaaatatatcaaagaTCAACGTGAGAAA
AGTGGTAGACGTAATCGGTTTGATTATTTACAATCTTTGGTCACTGAATT
TCAAGATACTGATAATGAAGAATCAAAACTGCAAATACTGGCCAACCTTG
GTAACTTTGCTTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAAT
GTTGTTGATTTATTCATCGATATGCTAtctgaaaacaatgaaaaattcgT
AGAATTTGGAATGGCTGGTTTGTGTAACCTCTGTGTTGAGTCAACAAATA
GAGACCATATCATTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTC
TCAAGCACTAATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATA
TTTAGTCACACCAGCCACCAGGAAAGACATCATAACAGAAGAAATTGTGG
ATTGCATGAAACAATTGAAGACCTCAACAAATCCAAGATTGAAAAATCTT
GCTACCATTTTCCTACAGCTGATACCCGTCAAATCAACCTATCTAATCAA
CTCTAACTGAatgttttcaagtgaaaaatatatcaaagaTCAACGTGAGA
AAAGTGGTAGACGTAATCGGTTTGATTATTTACAATCTTTGGTCACTGAA
TTTCAAGATACTGATAATGAAGAATCAAAACTGCAAATACTGGCCAACCT
TGGTAACTTTGCTTACGACCCCATCAACTTCAATCATCTGCGGGAACTGA
ATGTTGTTGATTTATTCATCGATATGCTAtctgaaaacaatgaaaaattc
gTAGAATTTGGAATGGCTGGTTTGTGTAACCTCTGTGTTGAGTCAACAAA
TAGAGACCATATCATTAAGAATGAAGGTGTAGATGCCATTATGCAATGCT
TCTCAAGCACTAATGAAGAAATAGTGTTGAATGCCATGACAACACTCATA
TATTTAGTCACACCAGCCACCAGGAAAGACATCATAACAGAAGAAATTGT
GGATTGCATGAAACAATTGAAGACCTCAACAAATCCAAGATTGAAAAATC
TTGCTACCATTTTCCTACAGCTGATACCCGTCAAATCAACCTATCTAATC
AACTCTAACTGAatgttttcaagtgaaaaatatatcaaagaTCAACGTGA
GAAAAGTGGTAGACGTAATCGGTTTGATTATTTACAATCTTTGGTCACTG
AATTTCAAGATACTGATAATGAAGAATCAAAACTGCAAATACTGGCCAAC
CTTGGTAACTTTGCTTACGACCCCATCAACTTCAATCATCTGCGGGAACT
GAATGTTGTTGATTTATTCATCGATATGCTAtctgaaaacaatgaaaaat
tcgTAGAATTTGGAATGGCTGGTTTGTGTAACCTCTGTGTTGAGTCAACA
AATAGAGACCATATCATTAAGAATGAAGGTGTAGATGCCATTATGCAATG
CTTCTCAAGCACTAATGAAGAAATAGTGTTGAATGCCATGACAACACTCA
TATATTTAGTCACACCAGCCACCAGGAAAGACATCATAACAGAAGAAATT
GTGGATTGCATGAAACAATTGAAGACCTCAACAAATCCAAGATTGAAAAA
TCTTGCTACCATTTTCCTACAGCTGATACCCGTCAAATCAACCTATCTAA
TCAACTCTAACTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038999	XLOC_038999	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062205-protein	TCONS_00062205-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_362	supercontig	scaffold_362:729376..732322 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.91476	6.81929	4.88926	2.0362	14.377	8.33608	9.98758	7.26265	1.87619	2.90788	5.77561	2.25031	2.65437	1.63709	2.63033	3.2697	3.793	6.04008	1.02024	2.60009	3.87992	4.47008	4.52329	7.98553	8.18262	7.4682	4.52335	5.13075	2.33345	5.08109

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

Blast

[Close]

BLAST of TCONS_00062205 vs. Swiss-Prot (Human)
Match: ARMC7 (Armadillo repeat-containing protein 7 OS=Homo sapiens GN=ARMC7 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.223e-51
Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = 1

Query:   94 NRFDYLQSLVTEFQDTDNEESKLQILANLGNFAYDPINFNHLRELNVVDLFIDMLSENNEKFVEFGMAGLCNLCVESTNRDHIIKNEGVDAIMQCFSSTNEEIVLNAMTTLIYLVTPATR--KDIITEEIVDCMKQLKTSTNPRLKNLATIFLQ 549
             R  YLQ+LVTEFQ+T ++++K Q+LANL NFAYDP N+ +LR+L V+DLF+D LSE NE  VEF + GLCNLC +  N++HI+   GV  I+ C SS NEE VL+A+TTL++L  P      ++    +V CM +   S + RL+NLA IFL+
Sbjct:   12 GRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENETLVEFAIGGLCNLCPDRANKEHILHAGGVPLIINCLSSPNEETVLSAITTLMHLSPPGRSFLPELTATPVVQCMLRFSLSASARLRNLAQIFLE 165

The following BLAST results are available for this feature:

BLAST of TCONS_00062205 vs. Swiss-Prot (Human)

BLAST of TCONS_00062205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARMC7	1.223e-51	50.65	Armadillo repeat-containing protein 7 OS=Homo sapi...	[more]

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TCONS_00062205 (transcript) - C. hemisphaerica