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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062203 ID=TCONS_00062203|Name=TCONS_00062203|organism=Clytia hemisphaerica|type=transcript|length=1816bp
NNATTAAACCTATTGATAGCCAGCAACCTTCTGCCCATGTCGTACCTTCT
AAAAGTCAAGCCGCCCCTCAGGTTAAGCGGCTAGCGCCCACCGTTCCTAA
AGTCAAACGACAGGCACCAGTACCGCAAACAAAACGCCAAGCTCCAACGC
CACAAAAGGCCGCCAGTCAGGCTGCGAAGggagataatccgtttttagaC
GATGAGGACGAAAATATCGGGGATAATAGTAATCCGTTTTTGGACGATGA
TGAGAATACGGAATCGGGGAATCCGTTTTTGGATGACGGAGATGATGAAG
AGAATTGAGCAAAGGTGATCGAGGCACTGATTGCAATTGAATGGAATAGA
CTCGTAGACTTTACTGAGGATTCTGTTTTTATGTTCTTAACCTCCATCAG
TTTTATTATGTCATTTTCTTCTAAAACAAGCAATTTTCTGTTTAATAAGA
CTTATAAGGGGGTCTTAAAAGTAAAGAATCATTTTTTAAGTAGTTAGAGA
GTCAACCCAAAAGCTGCAGAGTAAAGCGTTGGCATTTGTGCGCAGTCAGA
CAACTTTATTTTCCGTTATGTCCTATAAAACCTATAAAATATCCGGGGAA
TGCGCAAGAAACGCTTTCTTAGTCTCTTAAAGGTGATTTGCACGCGTCTT
TATATCCAGTAGAAGTTACAATTTTTAAAGCGAATTTGCAATGTAGCCNc
agtcaaaagatatcaaacaaagttataagctaattgacgtctaaaaacgc
tgttttctgctgttttttggggtcaatcacttatcaactttgtatcataa
ctttatattgaatgaatattttagtgaaatttcttcccagtgatgacctc
caaagatcaaagaatctctccagtgaaaatgatagttatagcacttttct
acaagatcttaatttctttcttcttcattttcatcttcatttttagaatt
cctttgaagatttttttatttcaaattgttccactcacaaatatctctcc
aatgataccaaatatataaagattgaagaattccttcaaaagttataggt
aaaagaaaaaagagtgcacacttatcgtgaatagactttagttaactaag
cccgtattcacaaggctaggacacacggctaatggcaatatagtgttttc
ggcgctttaaagattttttatatttacggattttaagtttcccttggaat
actgttattcagtcacaacttaccatcagatttatcctggtgactgaatc
aaactagcttagatttctaggctatttGCAATGTTGACTTTGTAAAAACT
TTTATCCGTCCAGCCAATGTCTTGTCTAAGTGGTTGTAGTATACTAGTAG
TCGAAAAGTCCAAAGTTCAAATCTACTCACTTATATGCGTCATTCTCGAT
GAAAATCCTTTGATTGTAAATAATTTGTTGTCAACTAAAGACTGTGTACG
TTTCGTTTGGCATGGGaatgactttgaagtttttcttaactttttaggcT
CAATATTTCTTTACTCCAGCCCTTATCGAAATACCTGTTACTATTTGATT
TCCAATTattgtaaaaattattttttatatattagattttttttttaatt
atacaAATTGGAATTTACTTGCATGAAAAAAAATGcaggaaatatttgaa
agatGTTTTACGTGCTTTACCTTCTCCAATCCGGTCCTCGGCCAACGGTG
ACTCTCGGCAAACCGAAGGAGGTTATTCTCCAGAATATTTATGATGTGTA
ATCCATTGAGTGTCAAGCcagaagggctagaggcgaaactttaatcactt
ctcaggcaagagaaat Run BLAST on NCBI protein sequence of TCONS_00062203-protein >TCONS_00062203-protein ID=TCONS_00062203-protein|Name=TCONS_00062203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
IKPIDSQQPSAHVVPSKSQAAPQVKRLAPTVPKVKRQAPVPQTKRQAPTP
QKAASQAAKGDNPFLDDEDENIGDNSNPFLDDDENTESGNPFLDDGDDEE
N Run BLAST on NCBI transcript from alignment at scaffold_362:688457..690448+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062203 ID=TCONS_00062203|Name=TCONS_00062203|organism=Clytia hemisphaerica|type=transcript|length=1992bp|location=Sequence derived from alignment at scaffold_362:688457..690448+ (Clytia hemisphaerica)
NNATTAAACCTATTGATAGCCAGCAACCTTCTGCCCATGTCGTACCTTCT
AAAAGTCAAGCCGCCCCTCAGGTTAAGCGGCTAGCGCCCACCGTTCCTAA
AGTCAAACGACAGGCACCAGTACCGCAAACAAAACGCCAAGCTCCAACGC
CACAAAAGGCCGCCAGTCAGGCTGCGAAGggagataatccgtttttagaC
GATGAGGACGAAAATATCGGGGATAATAGTAATCCGTTTTTGGACGATGA
TGAGAATACGGAATCGGGGAATCCGTTTTTGGATGACGGAGATGATGAAG
AGAGTAAGACATCGAATCCTTTCCTTGATGATTGAACAACTATAAATATT
GTTCATTGTTAAAACTTTTCCCACTGTATACGGGAATCCGCCCAGCTGGG
GTTTTCACTTTGGTTTGTTTCCGTAGGCCTTGAAAAAAGGAAATCTGttt
aactcttttttttttaactttctgtCCAGATTGAGCAAAGGTGATCGAGG
CACTGATTGCAATTGAATGGAATAGACTCGTAGACTTTACTGAGGATTCT
GTTTTTATGTTCTTAACCTCCATCAGTTTTATTATGTCATTTTCTTCTAA
AACAAGCAATTTTCTGTTTAATAAGACTTATAAGGGGGTCTTAAAAGTAA
AGAATCATTTTTTAAGTAGTTAGAGAGTCAACCCAAAAGCTGCAGAGTAA
AGCGTTGGCATTTGTGCGCAGTCAGACAACTTTATTTTCCGTTATGTCCT
ATAAAACCTATAAAATATCCGGGGAATGCGCAAGAAACGCTTTCTTAGTC
TCTTAAAGGTGATTTGCACGCGTCTTTATATCCAGTAGAAGTTACAATTT
TTAAAGCGAATTTGCAATGTAGCCNcagtcaaaagatatcaaacaaagtt
ataagctaattgacgtctaaaaacgctgttttctgctgttttttggggtc
aatcacttatcaactttgtatcataactttatattgaatgaatattttag
tgaaatttcttcccagtgatgacctccaaagatcaaagaatctctccagt
gaaaatgatagttatagcacttttctacaagatcttaatttctttcttct
tcattttcatcttcatttttagaattcctttgaagatttttttatttcaa
attgttccactcacaaatatctctccaatgataccaaatatataaagatt
gaagaattccttcaaaagttataggtaaaagaaaaaagagtgcacactta
tcgtgaatagactttagttaactaagcccgtattcacaaggctaggacac
acggctaatggcaatatagtgttttcggcgctttaaagattttttatatt
tacggattttaagtttcccttggaatactgttattcagtcacaacttacc
atcagatttatcctggtgactgaatcaaactagcttagatttctaggcta
tttGCAATGTTGACTTTGTAAAAACTTTTATCCGTCCAGCCAATGTCTTG
TCTAAGTGGTTGTAGTATACTAGTAGTCGAAAAGTCCAAAGTTCAAATCT
ACTCACTTATATGCGTCATTCTCGATGAAAATCCTTTGATTGTAAATAAT
TTGTTGTCAACTAAAGACTGTGTACGTTTCGTTTGGCATGGGaatgactt
tgaagtttttcttaactttttaggcTCAATATTTCTTTACTCCAGCCCTT
ATCGAAATACCTGTTACTATTTGATTTCCAATTattgtaaaaattatttt
ttatatattagattttttttttaattatacaAATTGGAATTTACTTGCAT
GAAAAAAAATGcaggaaatatttgaaagatGTTTTACGTGCTTTACCTTC
TCCAATCCGGTCCTCGGCCAACGGTGACTCTCGGCAAACCGAAGGAGGTT
ATTCTCCAGAATATTTATGATGTGTAATCCATTGAGTGTCAAGCcagaag
ggctagaggcgaaactttaatcacttctcaggcaagagaaat Coding sequence (CDS) from alignment at scaffold_362:688457..690448+ >TCONS_00062203 ID=TCONS_00062203|Name=TCONS_00062203|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_362:688457..690448+ (Clytia hemisphaerica)
ATTAAACCTATTGATAGCCAGCAACCTTCTGCCCATGTCGTACCTTCTAA
AAGTCAAGCCGCCCCTCAGGTTAAGCGGCTAGCGCCCACCGTTCCTAAAG
TCAAACGACAGGCACCAGTACCGCAAACAAAACGCCAAGCTCCAACGCCA
CAAAAGGCCGCCAGTCAGGCTGCGAAGggagataatccgtttttagaCGA
TGAGGACGAAAATATCGGGGATAATAGTAATCCGTTTTTGGACGATGATG
AGAATACGGAATCGGGGAATCCGTTTTTGGATGACGGAGATGATGAAGAG
AATTGAATTAAACCTATTGATAGCCAGCAACCTTCTGCCCATGTCGTACC
TTCTAAAAGTCAAGCCGCCCCTCAGGTTAAGCGGCTAGCGCCCACCGTTC
CTAAAGTCAAACGACAGGCACCAGTACCGCAAACAAAACGCCAAGCTCCA
ACGCCACAAAAGGCCGCCAGTCAGGCTGCGAAGggagataatccgttttt
agaCGATGAGGACGAAAATATCGGGGATAATAGTAATCCGTTTTTGGACG
ATGATGAGAATACGGAATCGGGGAATCCGTTTTTGGATGACGGAGATGAT
GAAGAGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062203-exon-scaffold_362-1491911889:688457..688759 | TCONS_00062203-exon-scaffold_362-1491911889:688457..688759 | Clytia hemisphaerica | exon |
| TCONS_00062203-exon-scaffold_362-1510915933:688457..688759 | TCONS_00062203-exon-scaffold_362-1510915933:688457..688759 | Clytia hemisphaerica | exon |
| TCONS_00062203-exon-scaffold_362-1575043694:688457..688759 | TCONS_00062203-exon-scaffold_362-1575043694:688457..688759 | Clytia hemisphaerica | exon |
| TCONS_00062203-exon-scaffold_362-1491911889:688936..690448 | TCONS_00062203-exon-scaffold_362-1491911889:688936..690448 | Clytia hemisphaerica | exon |
| TCONS_00062203-exon-scaffold_362-1510915933:688936..690448 | TCONS_00062203-exon-scaffold_362-1510915933:688936..690448 | Clytia hemisphaerica | exon |
| TCONS_00062203-exon-scaffold_362-1575043694:688936..690448 | TCONS_00062203-exon-scaffold_362-1575043694:688936..690448 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:688457..690448 + |
Blast
The following BLAST results are available for this feature:
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