TCONS_00062189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062189
Unique NameTCONS_00062189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062189 ID=TCONS_00062189|Name=TCONS_00062189|organism=Clytia hemisphaerica|type=transcript|length=1390bp
AGAATATGAAAATATCTCTTTGCTTCATCTGACCTAATATTTGACTTTAC
AGAATCGTTATAGTTTGACGGTGTGTAAAGTTCCATAGAACGTACCACAG
GACATTCAGATGACGGCAAAAATTTTGGTATGAGTTTTTCGCGGTAATGT
TATTCGTTGGTAATGAAATATTTTgtgaaatgattttttaagaAGATTCT
TTATTAGTAAAGTGAAACATATATCAACCCACGTAAATTTTTTTACGTGT
TTGATTATCTCATCATGGCTTGCGTACGACGAATCATTCTAACAATCACA
ATCTATTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAATTGAA
AACACAAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagtttggt
TAGTTTCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTACATACT
GAGGACCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGAAGACA
GATAGGCACAATTTTAGATAGCAGTTTAGCCAAAGAAACAaacttcatta
ttttcccatacGGCTCAAAACGTTCAAAAcaaacgaaacaaaaacatGCT
GTGAATCTAAATGAGGCTTTGAAGATCGTTTCGGAATTTATCCCCGATAT
CACAACCCGATTGGATTCGAATGTGGATGGGACGAATTCACAATTACGTG
cattctttcaaaagatttttatgactcgaccaatcaaattcccTGTCATC
TACTTTACAGAAAACAAAGAACCACCCATTGAAATTCGAGCGTTAGCTTT
GAAATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAGACCAACCAAAA
ACGCTTTAAACGCCTACGCAATAAAATCACTACCACACTTCAGTGGATAC
ATTATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAATTACATTTACCA
AGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTGTACACTTCTTGT
ATTTGCTACATAAAAATCATTTCAAGGAATTACCAAAAGTAAGGAAGCCG
AAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGATGATGAGATTGAACT
TGATTTGGAGGAGACGTTTAGTGAAGATTTTGAATTATTTCATGAACTTT
ACAAAATGTTCCCCATGGAGTATGGGACCAAGGATGAATTATAGACCAAC
ATGTTTGTAGATCACAGAAAAAAAGCGTTCAAGATTAATTAGATTTCTAT
ACTCAGTGTATCTTTCATTGGAGCTTTTGTAAAATCAGGATTATTTTGGC
TAATTCCTTTTCTTTTCTTTGTTGTTTTAATTTTTCCTATGATTATTTTG
AAAAAGATTAAAATGAATGATCAATATATTGACAAATGCT
Run BLAST on NCBI

transcript from alignment at scaffold_362:520874..525175+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062189 ID=TCONS_00062189|Name=TCONS_00062189|organism=Clytia hemisphaerica|type=transcript|length=4302bp|location=Sequence derived from alignment at scaffold_362:520874..525175+ (Clytia hemisphaerica)
AGAATATGAAAATATCTCTTTGCTTCATCTGACCTAATATTTGACTTTAC
AGAATCGTTATAGTTTGACGGTGTGTAAAGTTCCATAGAACGTACCACAG
GACATTCAGATGACGGCAAAAATTTTGGTATGAGTTTTTCGCGGTAATGT
TATTCGTTGGTAATGAAATATTTTgtgaaatgattttttaagaAGATTCT
TTATTAGTAAAGTGAAACATATATCAACCCACGTAAATTTTTTTACGTGT
TTGATTATCTCATCATGGCTTGCGTAAGTGATATTTTCGTGCTTGTTCAA
AGTAACTTTCGGATAATTCTTTTATTGCTATTAGGTTTTATGTGAATTTA
AAAATCTTAAATCTTTACTCGTTTTAATTATATTTCACCTTGTTAGTGTT
TTTCCACAGTACAAAGCGAAAAGCATCACTTTCTCTAGACCCAATGAGGA
ACGTGTTTAACCAGGGAGAATAAAATGAAGCGATAAAGTGATTTTCAGCC
TAATTTCCTAGTGGAAATAAGGGTGGGTAACAAAGCTGTTAAAATGTATT
CGTCTAAGGCACGGACCTTCACAGCCAGCAGAGGTAGGCCACCGTTACAG
TTTGAACGGGCTCTTTCTAAATATCAATTTTTGGTAAAAAATAAGACCCT
CATTAAAAAGATTTTCACCATAATAGAAAACAATTAGGCCTGTCAAATGC
AAAATCTGAAATATTTCATCAAAAGTCAACTCTGGTAAATTTATAAGATT
GTCAGATTTTATCAAAGTCTGAAAAGGAGGCAAACCAGCAGTGTCCCCGT
ACTTAATTTTACCTAATTAACCTTCTGGAGTTTAATTACCTAAACAGCAT
TTCACAGTTTTCTTCATTATAAACATTAGGTACGACGAATCATTCTAACA
ATCACAATCTATTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGA
ATTGAAAACACAAGAAGATCTTGAAgaaaacattttacaaaatgaaaaag
tttggtTAGTTTCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTA
CATACTGAGGACCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAG
AAGACAGATAGGCACAATTTTAGATGTAAgtgaccaaaattttaaaatat
ctttctccAAAGAATGTCGATGTTGACCTTTGTGTAAAGCTAAGCCTACA
CTGATGTCTTTTTCCTAGCGTCTGCAAAATGCAAGGTTCGCCGGATTTCC
CTTTCTCTAATGAATGATATCATTATATATCCTATATTACTAAATcatgt
tggacggtgaaaaagaatgcggctattatattttcatttatattaCTGTA
TTATCATGATTataacgactccagtctagtctCGATGCCTTGATTACAGT
TTGTTTTTGTACTTGTTTGGTCATTGAAATGTAGGTCTTGTCACGTGACA
TAGTGTACTTAAATCTTATATgtaatttgtttttcaaaagtgAAATTTAA
GATATAAATAAATTCATAAAGAGTGTTATAGATAAACTATAAAACGAATT
ATGAAGATTTTCCCTTTCATCTGATATTCTTTTTCCATACATACTGTATA
TCCCAATAAACAGAAAGGGTCCGAGCAATAAACCCTAATGGCGTGCGATA
GCTAATGAGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACCCCAG
TGTCCAAACAATCAAAAGAACAAACTGTAATCAAGGCATTGACACAGATa
agactaccttaagggaacttattttggccggaactaattttggcgaattt
gacgaaattagttcccaccaaaattaaataatttgctcactcgccaaaat
aagttctcgccaaaattaaattttttggtattttgcctaaataNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTGC
GATAGCTAATGAGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACC
CCAGTGTCCAAACAATCAAAAGAACAAACTGTAACCAAGGCCTACACAGA
Taagactaccttaagggaacttattttggccggaactaattttggcgaat
ttggcgaaattagttcccaccaaaattaaataatttgctcactcgccaaa
ataagttctcgccaaaattaaattttttggtattttgcctaaataacttc
ttgagttcACAAATAACGCCTCAAATAAGGCAAagtagaacagatttacg
ctgtctttcgccaaaattagttcccaccaaaattaaaaaaattcatcaat
cgTCAaattaagttctcgccaaaattaaaaattttcaggatttttgccgC
TCTGACCGATAACCTAACAAGCTGCTTTTCATTCTGTTTCAGAGCAGTTT
AGCCAAAGAAACAaacttcattattttcccatacGGCTCAAAACGTTCAA
AAcaaacgaaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATC
GTTTCGGAATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGA
TGGGACGAATTCACAATTACGTGcattctttcaaaagatttttatgactc
gaccaatcaaattcccTGTCATCTACTTTACAGGTAATCCATCTCTTTTT
GGCCCAACCTCTCGCTCggttttaaagggacataaaagtagtaaacattg
cgcgaaccacgtgtcattaaagagaacaattaaaatcacatgtccaaaac
aaacttgtgaaacaatagaaacaatcaaaaatcagccatatttgttttga
ttttgacacgtgacatttgttttgattttgtatcccacttcatacggttt
gtttacaaagttcgatagtacttttatgtccctttaaaggaCATAAttta
gaacacccccttctcacagacccgctggtcccccatcccactggaaaaat
agactaaaatatCGTCTTCAGTGGAATAAGTTATACTTTAATTGTTGtac
ccgctgaaaataatcaaataagcaaatcctcattGAAAATTATTAATTCC
ATCCTCAgtgaattttctggctagaaaacaagggaatttaaatccccagc
cataaaaacatgggaatatcaaacTCTATCGAGTGTTAAAGCGTTATTTT
TACTCCCCCTGGCTAAAAAGATCCCACTGGGTCAGTCAGAAGGGGTTGTT
ATCTGCTCCAAGTAATCTCCCATGGACACAAACCCTGGTTGAAACAATGG
TTGAAAAAATCCTAAGTCTGTGAGAAAGTAGCCTATACTAGACATCACGC
GCGTTTTATTTTACGCAATTAACGTCTATTCCACTTTGCGACTTTTTCGA
ATGTTTTGAGCCCGGGTTTTCGGGCTCTAAACATTCGAATTTTTGACGTC
ACTTTTAATTTTCGAAGCTCCTGTTGTAGCAAAAGAATCGAATTTGCGTC
AAAACACTTGAAAGGCTTTCTATTTTTCGAAAATCGTCAAAGTGAAACTC
ACTAAGAAACGAGATGAAAAATCCCGGGTTTTAGTGAGGTGCACGCTAGT
GAGAAAGGGGTATAACATGAAATTTAAATCTTTTCATAATTCCTCTAATC
AAATGATATTTTATCTTTATAGAAAACAAAGAACCACCCATTGAAATTCG
AGCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAA
GACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAATCACTACCACAC
TTCAGTGGATACATTATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAA
TTACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTG
TACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGGAATTACCAAAA
GTAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGATGA
TGAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTTGAATTAT
TTCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGACCAAGGATGAA
TTATAGACCAACATGTTTGTAGATCACAGAAAAAAAGCGTTCAAGATTAA
TTAGATTTCTATACTCAGTGTATCTTTCATTGGAGCTTTTGTAAAATCAG
GATTATTTTGGCTAATTCCTTTTCTTTTCTTTGTTGTTTTAATTTTTCCT
ATGATTATTTTGAAAAAGATTAAAATGAATGATCAATATATTGACAAATG
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038992XLOC_038992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062189-exon-scaffold_362-1491911889:520874..521146TCONS_00062189-exon-scaffold_362-1491911889:520874..521146Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1510915933:520874..521146TCONS_00062189-exon-scaffold_362-1510915933:520874..521146Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1575043694:520874..521146TCONS_00062189-exon-scaffold_362-1575043694:520874..521146Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1491911889:521753..521998TCONS_00062189-exon-scaffold_362-1491911889:521753..521998Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1510915933:521753..521998TCONS_00062189-exon-scaffold_362-1510915933:521753..521998Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1575043694:521753..521998TCONS_00062189-exon-scaffold_362-1575043694:521753..521998Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1491911889:523316..523556TCONS_00062189-exon-scaffold_362-1491911889:523316..523556Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1510915933:523316..523556TCONS_00062189-exon-scaffold_362-1510915933:523316..523556Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1575043694:523316..523556TCONS_00062189-exon-scaffold_362-1575043694:523316..523556Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1491911889:524546..525175TCONS_00062189-exon-scaffold_362-1491911889:524546..525175Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1510915933:524546..525175TCONS_00062189-exon-scaffold_362-1510915933:524546..525175Clytia hemisphaericaexon
TCONS_00062189-exon-scaffold_362-1575043694:524546..525175TCONS_00062189-exon-scaffold_362-1575043694:524546..525175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:520874..525175 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.2809	0.367056	0.442837	0	0	0.359529	0.390087	0	0.78186	0	1.53373	2.06234	0.549145	0.332576	1.46936	1.2544	3.71232	4.04805	0.789865	0	0.164896	0	0	0	0.511396	1.33709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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