|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062188 ID=TCONS_00062188|Name=TCONS_00062188|organism=Clytia hemisphaerica|type=transcript|length=1287bp
CGATTCCAATGAATCAACATTTGAAGAACACTATTAAAATCAAAGAATAT
GAAAATATCTCTTTGCTTCATCTGACCTAATATTTGACTTTACAGAATCG
TTATAGTTTGACGGTGTGTAAAGTTCCATAGAACGTACCACAGGACATTC
AGATGACGGCAAAAATTTTGGTACGACGAATCATTCTAACAATCACAATC
TATTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAATTGAAAAC
ACAAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagtttggtTAG
TTTCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTACATACTGAG
GACCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGAAGACAGAT
AGGCACAATTTTAGATAGCAGTTTAGCCAAAGAAACAaacttcattattt
tcccatacGGCTCAAAACGTTCAAAAcaaacgaaacaaaaacatGCTGTG
AATCTAAATGAGGCTTTGAAGATCGTTTCGGAATTTATCCCCGATATCAC
AACCCGATTGGATTCGAATGTGGATGGGACGAATTCACAATTACGTGcat
tctttcaaaagatttttatgactcgaccaatcaaattcccTGTCATCTAC
TTTACAGAAAACAAAGAACCACCCATTGAAATTCGAGCGTTAGCTTTGAA
ATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAGACCAACCAAAAACG
CTTTAAACGCCTACGCAATAAAATCACTACCACACTTCAGTGGATACATT
ATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAATTACATTTACCAAGG
CCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTGTACACTTCTTGTATT
TGCTACATAAAAATCATTTCAAGGAATTACCAAAAGTAAGGAAGCCGAAA
AGTAGTGATGACGTCAGAAATGCGGGAAAAGATGATGAGATTGAACTTGA
TTTGGAGGAGACGTTTAGTGAAGATTTTGAATTATTTCATGAACTTTACA
AAATGTTCCCCATGGAGTATGGGACCAAGGATGAATTATAGACCAACATG
TTTGTAGATCACAGAAAAAAAGCGTTCAAGATTAATTAGATTTCTATACT
CAGTGTATCTTTCATTGGAGCTTTTGTAAAATCAGGATTATTTTGGCTAA
TTCCTTTTCTTTTCTTTGTTGTTTTAATTTTTCCTATGATTATTTTGAAA
AAGATTAAAATGAATGATCAATATATTGACAAATGCT Run BLAST on NCBI protein sequence of TCONS_00062188-protein >TCONS_00062188-protein ID=TCONS_00062188-protein|Name=TCONS_00062188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTAKILVRRIILTITIYSTLSTITNCQILELKTQEDLEENILQNEKVWLV
SIHQTENQQREIVHTEDLYRGIFNAAQIERRQIGTILDSSLAKETNFIIF
PYGSKRSKQTKQKHAVNLNEALKIVSEFIPDITTRLDSNVDGTNSQLRAF
FQKIFMTRPIKFPVIYFTENKEPPIEIRALALKYSSLFQFGVISRPTKNA
LNAYAIKSLPHFSGYIIENVTSQPRLKNYIYQGQLNGPSEYPFLVHFLYL
LHKNHFKELPKVRKPKSSDDVRNAGKDDEIELDLEETFSEDFELFHELYK
MFPMEYGTKDEL Run BLAST on NCBI transcript from alignment at scaffold_362:520831..525175+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062188 ID=TCONS_00062188|Name=TCONS_00062188|organism=Clytia hemisphaerica|type=transcript|length=4345bp|location=Sequence derived from alignment at scaffold_362:520831..525175+ (Clytia hemisphaerica)
CGATTCCAATGAATCAACATTTGAAGAACACTATTAAAATCAAAGAATAT
GAAAATATCTCTTTGCTTCATCTGACCTAATATTTGACTTTACAGAATCG
TTATAGTTTGACGGTGTGTAAAGTTCCATAGAACGTACCACAGGACATTC
AGATGACGGCAAAAATTTTGGTATGAGTTTTTCGCGGTAATGTTATTCGT
TGGTAATGAAATATTTTgtgaaatgattttttaagaAGATTCTTTATTAG
TAAAGTGAAACATATATCAACCCACGTAAATTTTTTTACGTGTTTGATTA
TCTCATCATGGCTTGCGTAAGTGATATTTTCGTGCTTGTTCAAAGTAACT
TTCGGATAATTCTTTTATTGCTATTAGGTTTTATGTGAATTTAAAAATCT
TAAATCTTTACTCGTTTTAATTATATTTCACCTTGTTAGTGTTTTTCCAC
AGTACAAAGCGAAAAGCATCACTTTCTCTAGACCCAATGAGGAACGTGTT
TAACCAGGGAGAATAAAATGAAGCGATAAAGTGATTTTCAGCCTAATTTC
CTAGTGGAAATAAGGGTGGGTAACAAAGCTGTTAAAATGTATTCGTCTAA
GGCACGGACCTTCACAGCCAGCAGAGGTAGGCCACCGTTACAGTTTGAAC
GGGCTCTTTCTAAATATCAATTTTTGGTAAAAAATAAGACCCTCATTAAA
AAGATTTTCACCATAATAGAAAACAATTAGGCCTGTCAAATGCAAAATCT
GAAATATTTCATCAAAAGTCAACTCTGGTAAATTTATAAGATTGTCAGAT
TTTATCAAAGTCTGAAAAGGAGGCAAACCAGCAGTGTCCCCGTACTTAAT
TTTACCTAATTAACCTTCTGGAGTTTAATTACCTAAACAGCATTTCACAG
TTTTCTTCATTATAAACATTAGGTACGACGAATCATTCTAACAATCACAA
TCTATTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAATTGAAA
ACACAAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagtttggtT
AGTTTCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTACATACTG
AGGACCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGAAGACAG
ATAGGCACAATTTTAGATGTAAgtgaccaaaattttaaaatatctttctc
cAAAGAATGTCGATGTTGACCTTTGTGTAAAGCTAAGCCTACACTGATGT
CTTTTTCCTAGCGTCTGCAAAATGCAAGGTTCGCCGGATTTCCCTTTCTC
TAATGAATGATATCATTATATATCCTATATTACTAAATcatgttggacgg
tgaaaaagaatgcggctattatattttcatttatattaCTGTATTATCAT
GATTataacgactccagtctagtctCGATGCCTTGATTACAGTTTGTTTT
TGTACTTGTTTGGTCATTGAAATGTAGGTCTTGTCACGTGACATAGTGTA
CTTAAATCTTATATgtaatttgtttttcaaaagtgAAATTTAAGATATAA
ATAAATTCATAAAGAGTGTTATAGATAAACTATAAAACGAATTATGAAGA
TTTTCCCTTTCATCTGATATTCTTTTTCCATACATACTGTATATCCCAAT
AAACAGAAAGGGTCCGAGCAATAAACCCTAATGGCGTGCGATAGCTAATG
AGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACCCCAGTGTCCAA
ACAATCAAAAGAACAAACTGTAATCAAGGCATTGACACAGATaagactac
cttaagggaacttattttggccggaactaattttggcgaatttgacgaaa
ttagttcccaccaaaattaaataatttgctcactcgccaaaataagttct
cgccaaaattaaattttttggtattttgcctaaataNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTGCGATAGCT
AATGAGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACCCCAGTGT
CCAAACAATCAAAAGAACAAACTGTAACCAAGGCCTACACAGATaagact
accttaagggaacttattttggccggaactaattttggcgaatttggcga
aattagttcccaccaaaattaaataatttgctcactcgccaaaataagtt
ctcgccaaaattaaattttttggtattttgcctaaataacttcttgagtt
cACAAATAACGCCTCAAATAAGGCAAagtagaacagatttacgctgtctt
tcgccaaaattagttcccaccaaaattaaaaaaattcatcaatcgTCAaa
ttaagttctcgccaaaattaaaaattttcaggatttttgccgCTCTGACC
GATAACCTAACAAGCTGCTTTTCATTCTGTTTCAGAGCAGTTTAGCCAAA
GAAACAaacttcattattttcccatacGGCTCAAAACGTTCAAAAcaaac
gaaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATCGTTTCGG
AATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGATGGGACG
AATTCACAATTACGTGcattctttcaaaagatttttatgactcgaccaat
caaattcccTGTCATCTACTTTACAGGTAATCCATCTCTTTTTGGCCCAA
CCTCTCGCTCggttttaaagggacataaaagtagtaaacattgcgcgaac
cacgtgtcattaaagagaacaattaaaatcacatgtccaaaacaaacttg
tgaaacaatagaaacaatcaaaaatcagccatatttgttttgattttgac
acgtgacatttgttttgattttgtatcccacttcatacggtttgtttaca
aagttcgatagtacttttatgtccctttaaaggaCATAAtttagaacacc
cccttctcacagacccgctggtcccccatcccactggaaaaatagactaa
aatatCGTCTTCAGTGGAATAAGTTATACTTTAATTGTTGtacccgctga
aaataatcaaataagcaaatcctcattGAAAATTATTAATTCCATCCTCA
gtgaattttctggctagaaaacaagggaatttaaatccccagccataaaa
acatgggaatatcaaacTCTATCGAGTGTTAAAGCGTTATTTTTACTCCC
CCTGGCTAAAAAGATCCCACTGGGTCAGTCAGAAGGGGTTGTTATCTGCT
CCAAGTAATCTCCCATGGACACAAACCCTGGTTGAAACAATGGTTGAAAA
AATCCTAAGTCTGTGAGAAAGTAGCCTATACTAGACATCACGCGCGTTTT
ATTTTACGCAATTAACGTCTATTCCACTTTGCGACTTTTTCGAATGTTTT
GAGCCCGGGTTTTCGGGCTCTAAACATTCGAATTTTTGACGTCACTTTTA
ATTTTCGAAGCTCCTGTTGTAGCAAAAGAATCGAATTTGCGTCAAAACAC
TTGAAAGGCTTTCTATTTTTCGAAAATCGTCAAAGTGAAACTCACTAAGA
AACGAGATGAAAAATCCCGGGTTTTAGTGAGGTGCACGCTAGTGAGAAAG
GGGTATAACATGAAATTTAAATCTTTTCATAATTCCTCTAATCAAATGAT
ATTTTATCTTTATAGAAAACAAAGAACCACCCATTGAAATTCGAGCGTTA
GCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAGACCAAC
CAAAAACGCTTTAAACGCCTACGCAATAAAATCACTACCACACTTCAGTG
GATACATTATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAATTACATT
TACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTGTACACTT
CTTGTATTTGCTACATAAAAATCATTTCAAGGAATTACCAAAAGTAAGGA
AGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGATGATGAGATT
GAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTTGAATTATTTCATGA
ACTTTACAAAATGTTCCCCATGGAGTATGGGACCAAGGATGAATTATAGA
CCAACATGTTTGTAGATCACAGAAAAAAAGCGTTCAAGATTAATTAGATT
TCTATACTCAGTGTATCTTTCATTGGAGCTTTTGTAAAATCAGGATTATT
TTGGCTAATTCCTTTTCTTTTCTTTGTTGTTTTAATTTTTCCTATGATTA
TTTTGAAAAAGATTAAAATGAATGATCAATATATTGACAAATGCT Coding sequence (CDS) from alignment at scaffold_362:520831..525175+ >TCONS_00062188 ID=TCONS_00062188|Name=TCONS_00062188|organism=Clytia hemisphaerica|type=CDS|length=3756bp|location=Sequence derived from alignment at scaffold_362:520831..525175+ (Clytia hemisphaerica)
ATGACGGCAAAAATTTTGGTACGACGAATCATTCTAACAATCACAATCTA
TTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAATTGAAAACAC
AAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagtttggtTAGTT
TCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTACATACTGAGGA
CCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGAAGACAGATAG
GCACAATTTTAGATAGCAGTTTAGCCAAAGAAACAaacttcattattttc
ccatacGGCTCAAAACGTTCAAAAcaaacgaaacaaaaacatGCTGTGAA
TCTAAATGAGGCTTTGAAGATCGTTTCGGAATTTATCCCCGATATCACAA
CCCGATTGGATTCGAATGTGGATGGGACGAATTCACAATTACGTGcattc
tttcaaaagatttttatgactcgaccaatcaaattcccTGTCATCTACTT
TACAGAAAACAAAGAACCACCCATTGAAATTCGAGCGTTAGCTTTGAAAT
ATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAGACCAACCAAAAACGCT
TTAAACGCCTACGCAATAAAATCACTACCACACTTCAGTGGATACATTAT
AGAGAATGTGACGTCACAGCCTCGCTTGAAGAATTACATTTACCAAGGCC
AGTTAAACGGTCCATCTGAGTATCCTTTCCTTGTACACTTCTTGTATTTG
CTACATAAAAATCATTTCAAGGAATTACCAAAAGTAAGGAAGCCGAAAAG
TAGTGATGACGTCAGAAATGCGGGAAAAGATGATGAGATTGAACTTGATT
TGGAGGAGACGTTTAGTGAAGATTTTGAATTATTTCATGAACTTTACAAA
ATGTTCCCCATGGAGTATGGGACCAAGGATGAATTATAGATGACGGCAAA
AATTTTGGTACGACGAATCATTCTAACAATCACAATCTATTCAACGTTAT
CAACAATAACAAATTGTCAAATCTTGGAATTGAAAACACAAGAAGATCTT
GAAgaaaacattttacaaaatgaaaaagtttggtTAGTTTCAATCCATCA
GACAGAGAATCAACAAAGAGAAATTGTACATACTGAGGACCTTTATAGAG
GAATATTCAACGCTGCGCAGATTGAAAGAAGACAGATAGGCACAATTTTA
GATAGCAGTTTAGCCAAAGAAACAaacttcattattttcccatacGGCTC
AAAACGTTCAAAAcaaacgaaacaaaaacatGCTGTGAATCTAAATGAGG
CTTTGAAGATCGTTTCGGAATTTATCCCCGATATCACAACCCGATTGGAT
TCGAATGTGGATGGGACGAATTCACAATTACGTGcattctttcaaaagat
ttttatgactcgaccaatcaaattcccTGTCATCTACTTTACAGAAAACA
AAGAACCACCCATTGAAATTCGAGCGTTAGCTTTGAAATATTCAAGTCTT
TTTCAATTTGGAGTGATTTCAAGACCAACCAAAAACGCTTTAAACGCCTA
CGCAATAAAATCACTACCACACTTCAGTGGATACATTATAGAGAATGTGA
CGTCACAGCCTCGCTTGAAGAATTACATTTACCAAGGCCAGTTAAACGGT
CCATCTGAGTATCCTTTCCTTGTACACTTCTTGTATTTGCTACATAAAAA
TCATTTCAAGGAATTACCAAAAGTAAGGAAGCCGAAAAGTAGTGATGACG
TCAGAAATGCGGGAAAAGATGATGAGATTGAACTTGATTTGGAGGAGACG
TTTAGTGAAGATTTTGAATTATTTCATGAACTTTACAAAATGTTCCCCAT
GGAGTATGGGACCAAGGATGAATTATAGATGACGGCAAAAATTTTGGTAC
GACGAATCATTCTAACAATCACAATCTATTCAACGTTATCAACAATAACA
AATTGTCAAATCTTGGAATTGAAAACACAAGAAGATCTTGAAgaaaacat
tttacaaaatgaaaaagtttggtTAGTTTCAATCCATCAGACAGAGAATC
AACAAAGAGAAATTGTACATACTGAGGACCTTTATAGAGGAATATTCAAC
GCTGCGCAGATTGAAAGAAGACAGATAGGCACAATTTTAGATAGCAGTTT
AGCCAAAGAAACAaacttcattattttcccatacGGCTCAAAACGTTCAA
AAcaaacgaaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATC
GTTTCGGAATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGA
TGGGACGAATTCACAATTACGTGcattctttcaaaagatttttatgactc
gaccaatcaaattcccTGTCATCTACTTTACAGAAAACAAAGAACCACCC
ATTGAAATTCGAGCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGG
AGTGATTTCAAGACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAAT
CACTACCACACTTCAGTGGATACATTATAGAGAATGTGACGTCACAGCCT
CGCTTGAAGAATTACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTA
TCCTTTCCTTGTACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGG
AATTACCAAAAGTAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCG
GGAAAAGATGATGAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGA
TTTTGAATTATTTCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGA
CCAAGGATGAATTATAGATGACGGCAAAAATTTTGGTACGACGAATCATT
CTAACAATCACAATCTATTCAACGTTATCAACAATAACAAATTGTCAAAT
CTTGGAATTGAAAACACAAGAAGATCTTGAAgaaaacattttacaaaatg
aaaaagtttggtTAGTTTCAATCCATCAGACAGAGAATCAACAAAGAGAA
ATTGTACATACTGAGGACCTTTATAGAGGAATATTCAACGCTGCGCAGAT
TGAAAGAAGACAGATAGGCACAATTTTAGATAGCAGTTTAGCCAAAGAAA
CAaacttcattattttcccatacGGCTCAAAACGTTCAAAAcaaacgaaa
caaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATCGTTTCGGAATT
TATCCCCGATATCACAACCCGATTGGATTCGAATGTGGATGGGACGAATT
CACAATTACGTGcattctttcaaaagatttttatgactcgaccaatcaaa
ttcccTGTCATCTACTTTACAGAAAACAAAGAACCACCCATTGAAATTCG
AGCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAA
GACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAATCACTACCACAC
TTCAGTGGATACATTATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAA
TTACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTG
TACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGGAATTACCAAAA
GTAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGATGA
TGAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTTGAATTAT
TTCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGACCAAGGATGAA
TTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062188-exon-scaffold_362-1491911889:520831..521000 | TCONS_00062188-exon-scaffold_362-1491911889:520831..521000 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1510915933:520831..521000 | TCONS_00062188-exon-scaffold_362-1510915933:520831..521000 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1575043694:520831..521000 | TCONS_00062188-exon-scaffold_362-1575043694:520831..521000 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1491911889:521753..521998 | TCONS_00062188-exon-scaffold_362-1491911889:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1510915933:521753..521998 | TCONS_00062188-exon-scaffold_362-1510915933:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1575043694:521753..521998 | TCONS_00062188-exon-scaffold_362-1575043694:521753..521998 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1491911889:523316..523556 | TCONS_00062188-exon-scaffold_362-1491911889:523316..523556 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1510915933:523316..523556 | TCONS_00062188-exon-scaffold_362-1510915933:523316..523556 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1575043694:523316..523556 | TCONS_00062188-exon-scaffold_362-1575043694:523316..523556 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1491911889:524546..525175 | TCONS_00062188-exon-scaffold_362-1491911889:524546..525175 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1510915933:524546..525175 | TCONS_00062188-exon-scaffold_362-1510915933:524546..525175 | Clytia hemisphaerica | exon |
| TCONS_00062188-exon-scaffold_362-1575043694:524546..525175 | TCONS_00062188-exon-scaffold_362-1575043694:524546..525175 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:520831..525175 + |
Blast
The following BLAST results are available for this feature:
|
