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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062188 ID=TCONS_00062188|Name=TCONS_00062188|organism=Clytia hemisphaerica|type=transcript|length=1287bp CGATTCCAATGAATCAACATTTGAAGAACACTATTAAAATCAAAGAATAT GAAAATATCTCTTTGCTTCATCTGACCTAATATTTGACTTTACAGAATCG TTATAGTTTGACGGTGTGTAAAGTTCCATAGAACGTACCACAGGACATTC AGATGACGGCAAAAATTTTGGTACGACGAATCATTCTAACAATCACAATC TATTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAATTGAAAAC ACAAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagtttggtTAG TTTCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTACATACTGAG GACCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGAAGACAGAT AGGCACAATTTTAGATAGCAGTTTAGCCAAAGAAACAaacttcattattt tcccatacGGCTCAAAACGTTCAAAAcaaacgaaacaaaaacatGCTGTG AATCTAAATGAGGCTTTGAAGATCGTTTCGGAATTTATCCCCGATATCAC AACCCGATTGGATTCGAATGTGGATGGGACGAATTCACAATTACGTGcat tctttcaaaagatttttatgactcgaccaatcaaattcccTGTCATCTAC TTTACAGAAAACAAAGAACCACCCATTGAAATTCGAGCGTTAGCTTTGAA ATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAGACCAACCAAAAACG CTTTAAACGCCTACGCAATAAAATCACTACCACACTTCAGTGGATACATT ATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAATTACATTTACCAAGG CCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTGTACACTTCTTGTATT TGCTACATAAAAATCATTTCAAGGAATTACCAAAAGTAAGGAAGCCGAAA AGTAGTGATGACGTCAGAAATGCGGGAAAAGATGATGAGATTGAACTTGA TTTGGAGGAGACGTTTAGTGAAGATTTTGAATTATTTCATGAACTTTACA AAATGTTCCCCATGGAGTATGGGACCAAGGATGAATTATAGACCAACATG TTTGTAGATCACAGAAAAAAAGCGTTCAAGATTAATTAGATTTCTATACT CAGTGTATCTTTCATTGGAGCTTTTGTAAAATCAGGATTATTTTGGCTAA TTCCTTTTCTTTTCTTTGTTGTTTTAATTTTTCCTATGATTATTTTGAAA AAGATTAAAATGAATGATCAATATATTGACAAATGCT Run BLAST on NCBI protein sequence of TCONS_00062188-protein >TCONS_00062188-protein ID=TCONS_00062188-protein|Name=TCONS_00062188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTAKILVRRIILTITIYSTLSTITNCQILELKTQEDLEENILQNEKVWLV SIHQTENQQREIVHTEDLYRGIFNAAQIERRQIGTILDSSLAKETNFIIF PYGSKRSKQTKQKHAVNLNEALKIVSEFIPDITTRLDSNVDGTNSQLRAF FQKIFMTRPIKFPVIYFTENKEPPIEIRALALKYSSLFQFGVISRPTKNA LNAYAIKSLPHFSGYIIENVTSQPRLKNYIYQGQLNGPSEYPFLVHFLYL LHKNHFKELPKVRKPKSSDDVRNAGKDDEIELDLEETFSEDFELFHELYK MFPMEYGTKDEL Run BLAST on NCBI transcript from alignment at scaffold_362:520831..525175+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062188 ID=TCONS_00062188|Name=TCONS_00062188|organism=Clytia hemisphaerica|type=transcript|length=4345bp|location=Sequence derived from alignment at scaffold_362:520831..525175+ (Clytia hemisphaerica) CGATTCCAATGAATCAACATTTGAAGAACACTATTAAAATCAAAGAATAT
GAAAATATCTCTTTGCTTCATCTGACCTAATATTTGACTTTACAGAATCG
TTATAGTTTGACGGTGTGTAAAGTTCCATAGAACGTACCACAGGACATTC
AGATGACGGCAAAAATTTTGGTATGAGTTTTTCGCGGTAATGTTATTCGT
TGGTAATGAAATATTTTgtgaaatgattttttaagaAGATTCTTTATTAG
TAAAGTGAAACATATATCAACCCACGTAAATTTTTTTACGTGTTTGATTA
TCTCATCATGGCTTGCGTAAGTGATATTTTCGTGCTTGTTCAAAGTAACT
TTCGGATAATTCTTTTATTGCTATTAGGTTTTATGTGAATTTAAAAATCT
TAAATCTTTACTCGTTTTAATTATATTTCACCTTGTTAGTGTTTTTCCAC
AGTACAAAGCGAAAAGCATCACTTTCTCTAGACCCAATGAGGAACGTGTT
TAACCAGGGAGAATAAAATGAAGCGATAAAGTGATTTTCAGCCTAATTTC
CTAGTGGAAATAAGGGTGGGTAACAAAGCTGTTAAAATGTATTCGTCTAA
GGCACGGACCTTCACAGCCAGCAGAGGTAGGCCACCGTTACAGTTTGAAC
GGGCTCTTTCTAAATATCAATTTTTGGTAAAAAATAAGACCCTCATTAAA
AAGATTTTCACCATAATAGAAAACAATTAGGCCTGTCAAATGCAAAATCT
GAAATATTTCATCAAAAGTCAACTCTGGTAAATTTATAAGATTGTCAGAT
TTTATCAAAGTCTGAAAAGGAGGCAAACCAGCAGTGTCCCCGTACTTAAT
TTTACCTAATTAACCTTCTGGAGTTTAATTACCTAAACAGCATTTCACAG
TTTTCTTCATTATAAACATTAGGTACGACGAATCATTCTAACAATCACAA
TCTATTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAATTGAAA
ACACAAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagtttggtT
AGTTTCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTACATACTG
AGGACCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGAAGACAG
ATAGGCACAATTTTAGATGTAAgtgaccaaaattttaaaatatctttctc
cAAAGAATGTCGATGTTGACCTTTGTGTAAAGCTAAGCCTACACTGATGT
CTTTTTCCTAGCGTCTGCAAAATGCAAGGTTCGCCGGATTTCCCTTTCTC
TAATGAATGATATCATTATATATCCTATATTACTAAATcatgttggacgg
tgaaaaagaatgcggctattatattttcatttatattaCTGTATTATCAT
GATTataacgactccagtctagtctCGATGCCTTGATTACAGTTTGTTTT
TGTACTTGTTTGGTCATTGAAATGTAGGTCTTGTCACGTGACATAGTGTA
CTTAAATCTTATATgtaatttgtttttcaaaagtgAAATTTAAGATATAA
ATAAATTCATAAAGAGTGTTATAGATAAACTATAAAACGAATTATGAAGA
TTTTCCCTTTCATCTGATATTCTTTTTCCATACATACTGTATATCCCAAT
AAACAGAAAGGGTCCGAGCAATAAACCCTAATGGCGTGCGATAGCTAATG
AGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACCCCAGTGTCCAA
ACAATCAAAAGAACAAACTGTAATCAAGGCATTGACACAGATaagactac
cttaagggaacttattttggccggaactaattttggcgaatttgacgaaa
ttagttcccaccaaaattaaataatttgctcactcgccaaaataagttct
cgccaaaattaaattttttggtattttgcctaaataNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTGCGATAGCT
AATGAGCTTTAAGTAGACCATGTCACGTGACAAGACCCACACCCCAGTGT
CCAAACAATCAAAAGAACAAACTGTAACCAAGGCCTACACAGATaagact
accttaagggaacttattttggccggaactaattttggcgaatttggcga
aattagttcccaccaaaattaaataatttgctcactcgccaaaataagtt
ctcgccaaaattaaattttttggtattttgcctaaataacttcttgagtt
cACAAATAACGCCTCAAATAAGGCAAagtagaacagatttacgctgtctt
tcgccaaaattagttcccaccaaaattaaaaaaattcatcaatcgTCAaa
ttaagttctcgccaaaattaaaaattttcaggatttttgccgCTCTGACC
GATAACCTAACAAGCTGCTTTTCATTCTGTTTCAGAGCAGTTTAGCCAAA
GAAACAaacttcattattttcccatacGGCTCAAAACGTTCAAAAcaaac
gaaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATCGTTTCGG
AATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGATGGGACG
AATTCACAATTACGTGcattctttcaaaagatttttatgactcgaccaat
caaattcccTGTCATCTACTTTACAGGTAATCCATCTCTTTTTGGCCCAA
CCTCTCGCTCggttttaaagggacataaaagtagtaaacattgcgcgaac
cacgtgtcattaaagagaacaattaaaatcacatgtccaaaacaaacttg
tgaaacaatagaaacaatcaaaaatcagccatatttgttttgattttgac
acgtgacatttgttttgattttgtatcccacttcatacggtttgtttaca
aagttcgatagtacttttatgtccctttaaaggaCATAAtttagaacacc
cccttctcacagacccgctggtcccccatcccactggaaaaatagactaa
aatatCGTCTTCAGTGGAATAAGTTATACTTTAATTGTTGtacccgctga
aaataatcaaataagcaaatcctcattGAAAATTATTAATTCCATCCTCA
gtgaattttctggctagaaaacaagggaatttaaatccccagccataaaa
acatgggaatatcaaacTCTATCGAGTGTTAAAGCGTTATTTTTACTCCC
CCTGGCTAAAAAGATCCCACTGGGTCAGTCAGAAGGGGTTGTTATCTGCT
CCAAGTAATCTCCCATGGACACAAACCCTGGTTGAAACAATGGTTGAAAA
AATCCTAAGTCTGTGAGAAAGTAGCCTATACTAGACATCACGCGCGTTTT
ATTTTACGCAATTAACGTCTATTCCACTTTGCGACTTTTTCGAATGTTTT
GAGCCCGGGTTTTCGGGCTCTAAACATTCGAATTTTTGACGTCACTTTTA
ATTTTCGAAGCTCCTGTTGTAGCAAAAGAATCGAATTTGCGTCAAAACAC
TTGAAAGGCTTTCTATTTTTCGAAAATCGTCAAAGTGAAACTCACTAAGA
AACGAGATGAAAAATCCCGGGTTTTAGTGAGGTGCACGCTAGTGAGAAAG
GGGTATAACATGAAATTTAAATCTTTTCATAATTCCTCTAATCAAATGAT
ATTTTATCTTTATAGAAAACAAAGAACCACCCATTGAAATTCGAGCGTTA
GCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAGACCAAC
CAAAAACGCTTTAAACGCCTACGCAATAAAATCACTACCACACTTCAGTG
GATACATTATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAATTACATT
TACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTGTACACTT
CTTGTATTTGCTACATAAAAATCATTTCAAGGAATTACCAAAAGTAAGGA
AGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGATGATGAGATT
GAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTTGAATTATTTCATGA
ACTTTACAAAATGTTCCCCATGGAGTATGGGACCAAGGATGAATTATAGA
CCAACATGTTTGTAGATCACAGAAAAAAAGCGTTCAAGATTAATTAGATT
TCTATACTCAGTGTATCTTTCATTGGAGCTTTTGTAAAATCAGGATTATT
TTGGCTAATTCCTTTTCTTTTCTTTGTTGTTTTAATTTTTCCTATGATTA
TTTTGAAAAAGATTAAAATGAATGATCAATATATTGACAAATGCT Coding sequence (CDS) from alignment at scaffold_362:520831..525175+ >TCONS_00062188 ID=TCONS_00062188|Name=TCONS_00062188|organism=Clytia hemisphaerica|type=CDS|length=3756bp|location=Sequence derived from alignment at scaffold_362:520831..525175+ (Clytia hemisphaerica) ATGACGGCAAAAATTTTGGTACGACGAATCATTCTAACAATCACAATCTA TTCAACGTTATCAACAATAACAAATTGTCAAATCTTGGAATTGAAAACAC AAGAAGATCTTGAAgaaaacattttacaaaatgaaaaagtttggtTAGTT TCAATCCATCAGACAGAGAATCAACAAAGAGAAATTGTACATACTGAGGA CCTTTATAGAGGAATATTCAACGCTGCGCAGATTGAAAGAAGACAGATAG GCACAATTTTAGATAGCAGTTTAGCCAAAGAAACAaacttcattattttc ccatacGGCTCAAAACGTTCAAAAcaaacgaaacaaaaacatGCTGTGAA TCTAAATGAGGCTTTGAAGATCGTTTCGGAATTTATCCCCGATATCACAA CCCGATTGGATTCGAATGTGGATGGGACGAATTCACAATTACGTGcattc tttcaaaagatttttatgactcgaccaatcaaattcccTGTCATCTACTT TACAGAAAACAAAGAACCACCCATTGAAATTCGAGCGTTAGCTTTGAAAT ATTCAAGTCTTTTTCAATTTGGAGTGATTTCAAGACCAACCAAAAACGCT TTAAACGCCTACGCAATAAAATCACTACCACACTTCAGTGGATACATTAT AGAGAATGTGACGTCACAGCCTCGCTTGAAGAATTACATTTACCAAGGCC AGTTAAACGGTCCATCTGAGTATCCTTTCCTTGTACACTTCTTGTATTTG CTACATAAAAATCATTTCAAGGAATTACCAAAAGTAAGGAAGCCGAAAAG TAGTGATGACGTCAGAAATGCGGGAAAAGATGATGAGATTGAACTTGATT TGGAGGAGACGTTTAGTGAAGATTTTGAATTATTTCATGAACTTTACAAA ATGTTCCCCATGGAGTATGGGACCAAGGATGAATTATAGATGACGGCAAA AATTTTGGTACGACGAATCATTCTAACAATCACAATCTATTCAACGTTAT CAACAATAACAAATTGTCAAATCTTGGAATTGAAAACACAAGAAGATCTT GAAgaaaacattttacaaaatgaaaaagtttggtTAGTTTCAATCCATCA GACAGAGAATCAACAAAGAGAAATTGTACATACTGAGGACCTTTATAGAG GAATATTCAACGCTGCGCAGATTGAAAGAAGACAGATAGGCACAATTTTA GATAGCAGTTTAGCCAAAGAAACAaacttcattattttcccatacGGCTC AAAACGTTCAAAAcaaacgaaacaaaaacatGCTGTGAATCTAAATGAGG CTTTGAAGATCGTTTCGGAATTTATCCCCGATATCACAACCCGATTGGAT TCGAATGTGGATGGGACGAATTCACAATTACGTGcattctttcaaaagat ttttatgactcgaccaatcaaattcccTGTCATCTACTTTACAGAAAACA AAGAACCACCCATTGAAATTCGAGCGTTAGCTTTGAAATATTCAAGTCTT TTTCAATTTGGAGTGATTTCAAGACCAACCAAAAACGCTTTAAACGCCTA CGCAATAAAATCACTACCACACTTCAGTGGATACATTATAGAGAATGTGA CGTCACAGCCTCGCTTGAAGAATTACATTTACCAAGGCCAGTTAAACGGT CCATCTGAGTATCCTTTCCTTGTACACTTCTTGTATTTGCTACATAAAAA TCATTTCAAGGAATTACCAAAAGTAAGGAAGCCGAAAAGTAGTGATGACG TCAGAAATGCGGGAAAAGATGATGAGATTGAACTTGATTTGGAGGAGACG TTTAGTGAAGATTTTGAATTATTTCATGAACTTTACAAAATGTTCCCCAT GGAGTATGGGACCAAGGATGAATTATAGATGACGGCAAAAATTTTGGTAC GACGAATCATTCTAACAATCACAATCTATTCAACGTTATCAACAATAACA AATTGTCAAATCTTGGAATTGAAAACACAAGAAGATCTTGAAgaaaacat tttacaaaatgaaaaagtttggtTAGTTTCAATCCATCAGACAGAGAATC AACAAAGAGAAATTGTACATACTGAGGACCTTTATAGAGGAATATTCAAC GCTGCGCAGATTGAAAGAAGACAGATAGGCACAATTTTAGATAGCAGTTT AGCCAAAGAAACAaacttcattattttcccatacGGCTCAAAACGTTCAA AAcaaacgaaacaaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATC GTTTCGGAATTTATCCCCGATATCACAACCCGATTGGATTCGAATGTGGA TGGGACGAATTCACAATTACGTGcattctttcaaaagatttttatgactc gaccaatcaaattcccTGTCATCTACTTTACAGAAAACAAAGAACCACCC ATTGAAATTCGAGCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGG AGTGATTTCAAGACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAAT CACTACCACACTTCAGTGGATACATTATAGAGAATGTGACGTCACAGCCT CGCTTGAAGAATTACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTA TCCTTTCCTTGTACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGG AATTACCAAAAGTAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCG GGAAAAGATGATGAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGA TTTTGAATTATTTCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGA CCAAGGATGAATTATAGATGACGGCAAAAATTTTGGTACGACGAATCATT CTAACAATCACAATCTATTCAACGTTATCAACAATAACAAATTGTCAAAT CTTGGAATTGAAAACACAAGAAGATCTTGAAgaaaacattttacaaaatg aaaaagtttggtTAGTTTCAATCCATCAGACAGAGAATCAACAAAGAGAA ATTGTACATACTGAGGACCTTTATAGAGGAATATTCAACGCTGCGCAGAT TGAAAGAAGACAGATAGGCACAATTTTAGATAGCAGTTTAGCCAAAGAAA CAaacttcattattttcccatacGGCTCAAAACGTTCAAAAcaaacgaaa caaaaacatGCTGTGAATCTAAATGAGGCTTTGAAGATCGTTTCGGAATT TATCCCCGATATCACAACCCGATTGGATTCGAATGTGGATGGGACGAATT CACAATTACGTGcattctttcaaaagatttttatgactcgaccaatcaaa ttcccTGTCATCTACTTTACAGAAAACAAAGAACCACCCATTGAAATTCG AGCGTTAGCTTTGAAATATTCAAGTCTTTTTCAATTTGGAGTGATTTCAA GACCAACCAAAAACGCTTTAAACGCCTACGCAATAAAATCACTACCACAC TTCAGTGGATACATTATAGAGAATGTGACGTCACAGCCTCGCTTGAAGAA TTACATTTACCAAGGCCAGTTAAACGGTCCATCTGAGTATCCTTTCCTTG TACACTTCTTGTATTTGCTACATAAAAATCATTTCAAGGAATTACCAAAA GTAAGGAAGCCGAAAAGTAGTGATGACGTCAGAAATGCGGGAAAAGATGA TGAGATTGAACTTGATTTGGAGGAGACGTTTAGTGAAGATTTTGAATTAT TTCATGAACTTTACAAAATGTTCCCCATGGAGTATGGGACCAAGGATGAA TTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062188-exon-scaffold_362-1491911889:520831..521000 | TCONS_00062188-exon-scaffold_362-1491911889:520831..521000 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1510915933:520831..521000 | TCONS_00062188-exon-scaffold_362-1510915933:520831..521000 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1575043694:520831..521000 | TCONS_00062188-exon-scaffold_362-1575043694:520831..521000 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1491911889:521753..521998 | TCONS_00062188-exon-scaffold_362-1491911889:521753..521998 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1510915933:521753..521998 | TCONS_00062188-exon-scaffold_362-1510915933:521753..521998 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1575043694:521753..521998 | TCONS_00062188-exon-scaffold_362-1575043694:521753..521998 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1491911889:523316..523556 | TCONS_00062188-exon-scaffold_362-1491911889:523316..523556 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1510915933:523316..523556 | TCONS_00062188-exon-scaffold_362-1510915933:523316..523556 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1575043694:523316..523556 | TCONS_00062188-exon-scaffold_362-1575043694:523316..523556 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1491911889:524546..525175 | TCONS_00062188-exon-scaffold_362-1491911889:524546..525175 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1510915933:524546..525175 | TCONS_00062188-exon-scaffold_362-1510915933:524546..525175 | Clytia hemisphaerica | exon |
TCONS_00062188-exon-scaffold_362-1575043694:524546..525175 | TCONS_00062188-exon-scaffold_362-1575043694:524546..525175 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_362 | supercontig | scaffold_362:520831..525175 + |
Blast
The following BLAST results are available for this feature:
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