|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062178 ID=TCONS_00062178|Name=TCONS_00062178|organism=Clytia hemisphaerica|type=transcript|length=2149bp
CTTTGATGGAATTTATGGATCGAACATCAAATAACAACATTTTCTATTCA
GAGACCACAAAACCTGTAAACTTTTAAACTGATTTCTTTAAGTGTATGGC
ATAGAATCATTTgtagaaaagtttgaaaataaatttcggAAGATGATCAT
TGAAAATGTCACTGAAGCAAAATGTGATTTCAAAAAGGAGATCTTCCATA
ATGTCAAACGGTTTCTGAGACAAGTTGGCTTTTTAGCGATCCTGATTTTC
ACATCGAcgacaattttcttttttgtggaagaatgttattttcatgttct
acaacCTCCAACAAGTTACACTCAAATGTGCAACCAGCTTTGCCAAAATA
CTAAAATAATTAACGAAACACAGTCAAATAACACTGAAATCGTTAATTTG
TTTGGTAACGTTACAAAGTTTTGCGTTCAAGTCAAATGTAATTCAACGGA
AAATGTTTCACAAAAGAATTGTAAGCTTggtccaaaaaatgttttcaaat
ggtGGGCATTTGTCACTACCACGATCTTTACGATAGGGTATGGGAGGATC
GTTCCGAAATCGACGCTTGGCAGAGCTTTAACGATAGTGATGGGAATTAT
CGGTATTCCGATGGCTTCTGccaatgttttgttttgtggtAAAGCTATCA
ACAACACAATCAAATATTTAATCGTATGTTTTGAAAACTCTTGCTTGAAA
CGCCAAAGGATTGTATGGTTTAAACGCAAGGTGGCAGCTGTGCAAGTTTA
TTTGACCATATCAACGGTCGTACTTCACGCTGTATATTACAAATACACGT
CGTTCCAGGAGAACGATTTCTTTGAGATAACTTACTTCGTTTGTGTCACC
ATGTTGACTTTGGGATTCGGTGATGTTTATCCAGACACAACTTTTTTATA
CCAGCTGTCAACTATCAAACTAGTGTTTGTCACGTCCCTTGATGTTGGAC
TTTTCTATTGGAATTTGGCATTATTGGGGTCAATAATTGATTTTATAAGA
TCTATAGGAACTGAGTTGGGAACAGTACCCATGAAGAAAGATCATATCCA
CGATGACGATTCGGTGGTGCAAAATGATAATTCTATAATCTCTTGACCCG
ATGAAAATAGAGTTCTGTTGGAGTAGAATGTAGAGATGTCAGAAGGAATG
GAATACTGCTTATTGAAGTTTTTTCCAAGTAGGGATGAGAGCCCAGTTTC
ATTTTctaaggcgaggccaattttatcagttgttttacgggcccgaccga
cccttcattgctttacagactgccagattttcaaaattttggtagttttt
ccatgattttgagaattttatattcaatttttcatttcattcataaattc
tttttttgtgtcttttattttctatttcgcattgttgtcaagatgtagta
gtttttgctggctttttctaggagattttataggtgaaattcaACCTTTA
AggcccactcagcattttatccTCGTCGAACAAGGTGCACATCTCGGACG
CTTTGGTCGCTGAACACTTTTCTTATTCCATTGATCCAAAATAAAGGGGA
GATATGCTgcacaatttttcttttttctattgttgatatatttttgcaca
cggtacaagagagttaaatgtctcttctgattggctatttaaaaaagaac
aatagggaaGCCACACagcctagcgaaaaaagttgaaaagtttcaactct
tgGTTCGCTCAAGGCGACAGACAGCCTTTGAAGGCTTGATTcatgtaatt
tatgcaataattaagcAGCGCGCCTTGTTCGACGACCATAAagtgctgag
tgggtagcgacctttattttttattttttcgccgaccaaccgaccctctt
ttttgggtagcttggcccttAAAATAACAAGTTAAATTGGTCTTGCCCAA
TGGATGAAATACAAATAATTTGAGTTTTCTCACCGATGAGCCCACTCTGG
TCTGTGATACGAGTTGGTTCAAAATAATATGTTATTAGACTGACACGCCA
GTTGAGCTTGAACGGTTCCATAACTCCCACCCATAACACCCTCGCGCCTT
GTGACAAGATAAATTACTAGACTGatttattaattattttaaaattaaaa
taatttttcgtcaaaacatagattttaaataatttaatcCAATAATGAT Run BLAST on NCBI protein sequence of TCONS_00062178-protein >TCONS_00062178-protein ID=TCONS_00062178-protein|Name=TCONS_00062178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MIIENVTEAKCDFKKEIFHNVKRFLRQVGFLAILIFTSTTIFFFVEECYF
HVLQPPTSYTQMCNQLCQNTKIINETQSNNTEIVNLFGNVTKFCVQVKCN
STENVSQKNCKLGPKNVFKWWAFVTTTIFTIGYGRIVPKSTLGRALTIVM
GIIGIPMASANVLFCGKAINNTIKYLIVCFENSCLKRQRIVWFKRKVAAV
QVYLTISTVVLHAVYYKYTSFQENDFFEITYFVCVTMLTLGFGDVYPDTT
FLYQLSTIKLVFVTSLDVGLFYWNLALLGSIIDFIRSIGTELGTVPMKKD
HIHDDDSVVQNDNSIIS Run BLAST on NCBI transcript from alignment at scaffold_362:341902..344557+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062178 ID=TCONS_00062178|Name=TCONS_00062178|organism=Clytia hemisphaerica|type=transcript|length=2656bp|location=Sequence derived from alignment at scaffold_362:341902..344557+ (Clytia hemisphaerica)
CTTTGATGGAATTTATGGATCGAACATCAAATAACAACATTTTCTATTCA
GAGACCACAAAACCTGTAAACTTTTAAACTGATTTCTTTAAGTGTATGGC
ATAGAATCATTTgtagaaaagtttgaaaataaatttcggAAGATGATCAT
TGAAAATGTCACTGAAGCAAAATGTGATTTCAAAAAGGAGATCTTCCATA
ATGTCAAACGGTTTCTGAGACAAGTTGGCTTTTTAGCGATCCTGATTTTC
ACATCGAcgacaattttcttttttgtggaagaatgttattttcatgttct
acaacCTCCAACAAGTTACACTCAAATGTGCAACCAGCTTTGCCAAAATA
CTAAAATAATTAACGAAACACAGTCAAATAACACTGAAATCGTTAATTTG
TTTGGTAACGTTACAAAGTTTTGCGTTCAAGTCAAATGTAATTCAACGGA
AAATGTTTCACAAAAGAATTGTAAGCTTggtccaaaaaatgttttcaaat
ggtGGGCATTTGTCACTACCACGATCTTTACGATAGGTATAAAGTCTTTT
TTGAATTCTTATGCAGTGTAGACAATGCGCTTACCCAATTTTCAGAACAT
TTGAcctttcatcaaaaattataaagttCCCACCTATTTTGGCCAAAACA
TTGAGAAATCGTGGCCCATTGAGAGAGCAATATTCAGATTGTCTTGGACA
ATAGATcggtcccgggggggggggggggaNCAGGTTTAAACcactctgga
attctgaattttagtaggatttaaaatcCTACCCCCAtagaattccagtt
attttagACAGATTTTTATATCTTCCTATGGagttccgccacatatcaaa
cctcacccccttggaacggaaattgacctcctcaacaggtggtatacggt
ttttttctggaaaagcccagtTTTTTCTGTAGATATCAACGTAACAaaaa
acgttttcatttttggatatacCTGTAGGTACCCGGCTAAAATTTTTCAG
TTCATCACATTTTCATTTAGCaatcaaaactttgtttttccaGGGTATGG
GAGGATCGTTCCGAAATCGACGCTTGGCAGAGCTTTAACGATAGTGATGG
GAATTATCGGTATTCCGATGGCTTCTGccaatgttttgttttgtggtAAA
GCTATCAACAACACAATCAAATATTTAATCGTATGTTTTGAAAACTCTTG
CTTGAAACGCCAAAGGATTGTATGGTTTAAACGCAAGGTGGCAGCTGTGC
AAGTTTATTTGACCATATCAACGGTCGTACTTCACGCTGTATATTACAAA
TACACGTCGTTCCAGGAGAACGATTTCTTTGAGATAACTTACTTCGTTTG
TGTCACCATGTTGACTTTGGGATTCGGTGATGTTTATCCAGACACAACTT
TTTTATACCAGCTGTCAACTATCAAACTAGTGTTTGTCACGTCCCTTGAT
GTTGGACTTTTCTATTGGAATTTGGCATTATTGGGGTCAATAATTGATTT
TATAAGATCTATAGGAACTGAGTTGGGAACAGTACCCATGAAGAAAGATC
ATATCCACGATGACGATTCGGTGGTGCAAAATGATAATTCTATAATCTCT
TGACCCGATGAAAATAGAGTTCTGTTGGAGTAGAATGTAGAGATGTCAGA
AGGAATGGAATACTGCTTATTGAAGTTTTTTCCAAGTAGGGATGAGAGCC
CAGTTTCATTTTctaaggcgaggccaattttatcagttgttttacgggcc
cgaccgacccttcattgctttacagactgccagattttcaaaattttggt
agtttttccatgattttgagaattttatattcaatttttcatttcattca
taaattctttttttgtgtcttttattttctatttcgcattgttgtcaaga
tgtagtagtttttgctggctttttctaggagattttataggtgaaattca
ACCTTTAAggcccactcagcattttatccTCGTCGAACAAGGTGCACATC
TCGGACGCTTTGGTCGCTGAACACTTTTCTTATTCCATTGATCCAAAATA
AAGGGGAGATATGCTgcacaatttttcttttttctattgttgatatattt
ttgcacacggtacaagagagttaaatgtctcttctgattggctatttaaa
aaagaacaatagggaaGCCACACagcctagcgaaaaaagttgaaaagttt
caactcttgGTTCGCTCAAGGCGACAGACAGCCTTTGAAGGCTTGATTca
tgtaatttatgcaataattaagcAGCGCGCCTTGTTCGACGACCATAAag
tgctgagtgggtagcgacctttattttttattttttcgccgaccaaccga
ccctcttttttgggtagcttggcccttAAAATAACAAGTTAAATTGGTCT
TGCCCAATGGATGAAATACAAATAATTTGAGTTTTCTCACCGATGAGCCC
ACTCTGGTCTGTGATACGAGTTGGTTCAAAATAATATGTTATTAGACTGA
CACGCCAGTTGAGCTTGAACGGTTCCATAACTCCCACCCATAACACCCTC
GCGCCTTGTGACAAGATAAATTACTAGACTGatttattaattattttaaa
attaaaataatttttcgtcaaaacatagattttaaataatttaatcCAAT
AATGAT Coding sequence (CDS) from alignment at scaffold_362:341902..344557+ >TCONS_00062178 ID=TCONS_00062178|Name=TCONS_00062178|organism=Clytia hemisphaerica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_362:341902..344557+ (Clytia hemisphaerica)
ATGATCATTGAAAATGTCACTGAAGCAAAATGTGATTTCAAAAAGGAGAT
CTTCCATAATGTCAAACGGTTTCTGAGACAAGTTGGCTTTTTAGCGATCC
TGATTTTCACATCGAcgacaattttcttttttgtggaagaatgttatttt
catgttctacaacCTCCAACAAGTTACACTCAAATGTGCAACCAGCTTTG
CCAAAATACTAAAATAATTAACGAAACACAGTCAAATAACACTGAAATCG
TTAATTTGTTTGGTAACGTTACAAAGTTTTGCGTTCAAGTCAAATGTAAT
TCAACGGAAAATGTTTCACAAAAGAATTGTAAGCTTggtccaaaaaatgt
tttcaaatggtGGGCATTTGTCACTACCACGATCTTTACGATAGGGTATG
GGAGGATCGTTCCGAAATCGACGCTTGGCAGAGCTTTAACGATAGTGATG
GGAATTATCGGTATTCCGATGGCTTCTGccaatgttttgttttgtggtAA
AGCTATCAACAACACAATCAAATATTTAATCGTATGTTTTGAAAACTCTT
GCTTGAAACGCCAAAGGATTGTATGGTTTAAACGCAAGGTGGCAGCTGTG
CAAGTTTATTTGACCATATCAACGGTCGTACTTCACGCTGTATATTACAA
ATACACGTCGTTCCAGGAGAACGATTTCTTTGAGATAACTTACTTCGTTT
GTGTCACCATGTTGACTTTGGGATTCGGTGATGTTTATCCAGACACAACT
TTTTTATACCAGCTGTCAACTATCAAACTAGTGTTTGTCACGTCCCTTGA
TGTTGGACTTTTCTATTGGAATTTGGCATTATTGGGGTCAATAATTGATT
TTATAAGATCTATAGGAACTGAGTTGGGAACAGTACCCATGAAGAAAGAT
CATATCCACGATGACGATTCGGTGGTGCAAAATGATAATTCTATAATCTC
TTGAATGATCATTGAAAATGTCACTGAAGCAAAATGTGATTTCAAAAAGG
AGATCTTCCATAATGTCAAACGGTTTCTGAGACAAGTTGGCTTTTTAGCG
ATCCTGATTTTCACATCGAcgacaattttcttttttgtggaagaatgtta
ttttcatgttctacaacCTCCAACAAGTTACACTCAAATGTGCAACCAGC
TTTGCCAAAATACTAAAATAATTAACGAAACACAGTCAAATAACACTGAA
ATCGTTAATTTGTTTGGTAACGTTACAAAGTTTTGCGTTCAAGTCAAATG
TAATTCAACGGAAAATGTTTCACAAAAGAATTGTAAGCTTggtccaaaaa
atgttttcaaatggtGGGCATTTGTCACTACCACGATCTTTACGATAGGG
TATGGGAGGATCGTTCCGAAATCGACGCTTGGCAGAGCTTTAACGATAGT
GATGGGAATTATCGGTATTCCGATGGCTTCTGccaatgttttgttttgtg
gtAAAGCTATCAACAACACAATCAAATATTTAATCGTATGTTTTGAAAAC
TCTTGCTTGAAACGCCAAAGGATTGTATGGTTTAAACGCAAGGTGGCAGC
TGTGCAAGTTTATTTGACCATATCAACGGTCGTACTTCACGCTGTATATT
ACAAATACACGTCGTTCCAGGAGAACGATTTCTTTGAGATAACTTACTTC
GTTTGTGTCACCATGTTGACTTTGGGATTCGGTGATGTTTATCCAGACAC
AACTTTTTTATACCAGCTGTCAACTATCAAACTAGTGTTTGTCACGTCCC
TTGATGTTGGACTTTTCTATTGGAATTTGGCATTATTGGGGTCAATAATT
GATTTTATAAGATCTATAGGAACTGAGTTGGGAACAGTACCCATGAAGAA
AGATCATATCCACGATGACGATTCGGTGGTGCAAAATGATAATTCTATAA
TCTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062178-exon-scaffold_362-1491911889:341902..342437 | TCONS_00062178-exon-scaffold_362-1491911889:341902..342437 | Clytia hemisphaerica | exon |
| TCONS_00062178-exon-scaffold_362-1510915933:341902..342437 | TCONS_00062178-exon-scaffold_362-1510915933:341902..342437 | Clytia hemisphaerica | exon |
| TCONS_00062178-exon-scaffold_362-1575043694:341902..342437 | TCONS_00062178-exon-scaffold_362-1575043694:341902..342437 | Clytia hemisphaerica | exon |
| TCONS_00062178-exon-scaffold_362-1491911889:342945..344557 | TCONS_00062178-exon-scaffold_362-1491911889:342945..344557 | Clytia hemisphaerica | exon |
| TCONS_00062178-exon-scaffold_362-1510915933:342945..344557 | TCONS_00062178-exon-scaffold_362-1510915933:342945..344557 | Clytia hemisphaerica | exon |
| TCONS_00062178-exon-scaffold_362-1575043694:342945..344557 | TCONS_00062178-exon-scaffold_362-1575043694:342945..344557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:341902..344557 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
|
