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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062176 ID=TCONS_00062176|Name=TCONS_00062176|organism=Clytia hemisphaerica|type=transcript|length=1537bp
GTCAAAGAATAAACTCACATGATAAGATGATTTTAACCAAAATCGAAGAA
TCAAAGCAACAGTTCAAAACTGAGATTATCAATAATTTGAAGAAATATGT
TGTATTCCTCGTTGCCCTCCTAGTAGGTCTTTGTATAACGACAATTATCT
TTTTCTACGTCGAAGAATGCTATTTTCATGTTCCCGAACAGTGTCCAGCC
AATAACCAACAAACTTTCGAACTTTGTCAAAATGTCGATACAAAGAACCA
GACGACAACCTTGAATTATACTGAAGCTTTTGAAATTTATAccaaaatta
ctaaattttgtAATCACATTGAATTGGTTGAATGCAATAAGGATGGATTT
ATAATAACTTCAAAGGAAAATTGTGATTTTACAACAACCAGTTTTATTAA
ATGGATGAGTTTTTTATGCTCAACTGTTTTTACAATTGGTTATGGACATG
TTGTAGCTAAATCTACCCTTGGCAGAGGATTGACAATATTGATAGCAATT
TTTGGTATTCCAATGGCTTCAGCGACTGTTCTGTTTTGTGGCAAAGCAAT
TAACAACACTATCAAATACCTCATTGTATGCTTTGAAAACACTTGCTTGA
AACGTGGCAAGATTGTATGGTTTAAACGCAAGGTGGCTACAATACAATTT
CTTATAACAATATTGACGTTTTGTTTGTATTCCTTGTACTATCATTTAAC
AATGTTCAACAATAGAAGTTTCTTTGAAGCTTTCTATTTCGTTTGTATAT
CAATGTTGACTATCGGCTTTGGTGATATATCGCCTGATTTCGACTATGTT
AGCAGTCTCACTACATTCCAAATCATTGGTTTATCAGCCGTTGAGGTAAC
TTCATTCTTCTGGACTTTCTCTCTGATGGCATCTATCATTGATTTTTTAA
CATCACTTGAAACTGACCTTGCTGGATAtccaaagaaagaaaagaaaact
attATGGATGAAAACTATGTTGCGAAAAATAATAACGCGATAGACCAGTA
GGATGAAGCGATTGTTGAAAATGACAGCTTCTCAAACCAGGGAAAATATT
TGAACTTTTGCTGTTCTCCAAAGCAGAAAGATAGTCGTACGTACACCCCG
TTAAATATTTTCCTAACTGTCCTTATCTACTGTGTGTATCCATGAAcgat
aagtaatagttatcagacagttgcgagtacaatacaAAAGATACTtcacg
agttccgagatttttttgcataatatTTATATGCTATGTAAAAAAATTCG
GAACgagttttttttgaagaaaagtaaaaaataccaAACGAGGAAGGAGC
ATTATTTAACACCAGAGGGTAAGAAGTCCAAATTGCTTTAAACATATTAA
CTTTGAGCGCACGCAGCAGTTGGCCTTGACGTCAACAAGTAATTTCGTTT
CTGAATACGAGCTTTAATCAAATTCATTGATTTtgtaaacttttgaaaat
ttgaatacacgcttttttttataagaataaattctttaagaatatcaggg
tgagatttaaGAGTTAGAACAATAGACCTATTGTTTA Run BLAST on NCBI protein sequence of TCONS_00062176-protein >TCONS_00062176-protein ID=TCONS_00062176-protein|Name=TCONS_00062176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
QRINSHDKMILTKIEESKQQFKTEIINNLKKYVVFLVALLVGLCITTIIF
FYVEECYFHVPEQCPANNQQTFELCQNVDTKNQTTTLNYTEAFEIYTKIT
KFCNHIELVECNKDGFIITSKENCDFTTTSFIKWMSFLCSTVFTIGYGHV
VAKSTLGRGLTILIAIFGIPMASATVLFCGKAINNTIKYLIVCFENTCLK
RGKIVWFKRKVATIQFLITILTFCLYSLYYHLTMFNNRSFFEAFYFVCIS
MLTIGFGDISPDFDYVSSLTTFQIIGLSAVEVTSFFWTFSLMASIIDFLT
SLETDLAGYPKKEKKTIMDENYVAKNNNAIDQ Run BLAST on NCBI transcript from alignment at scaffold_362:327391..329484+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062176 ID=TCONS_00062176|Name=TCONS_00062176|organism=Clytia hemisphaerica|type=transcript|length=2094bp|location=Sequence derived from alignment at scaffold_362:327391..329484+ (Clytia hemisphaerica)
GTCAAAGAATAAACTCACATGATAAGATGATTTTAACCAAAATCGAAGAA
TCAAAGCAACAGTTCAAAACTGAGATTATCAATAATTTGAAGAAATATGT
TGTATTCCTCGTTGCCCTCCTAGTAGGTCTTTGTATAACGACAATTATCT
TTTTCTACGTCGAAGAATGCTATTTTCATGTTCCCGAACAGTGTCCAGCC
AATAACCAACAAACTTTCGAACTTTGTCAAAATGTCGATACAAAGAACCA
GACGACAACCTTGAATTATACTGAAGCTTTTGAAATTTATAccaaaatta
ctaaattttgtAATCACATTGAATTGGTTGAATGCAATAAGGATGGATTT
ATAATAACTTCAAAGGAAAATTGTGATTTTACAACAACCAGTTTTATTAA
ATGGATGAGTTTTTTATGCTCAACTGTTTTTACAATTGGTAAGTATTTGA
AGTTTAAAATGAATTCATTTTGTAAATGTGACTTATCACAGAAATCTCTC
AATGCACTTCCTGCGCCTATCTAATATTgttatttcaatgcaattttgtA
GCCAGAGCCTTTACAATATCCCTTTCTCCCAGTCCCAGTGGAACTTCTTC
CCGCAGGGGGGgatgaatttctatcaaaatcccaatgggggaAAATGGTC
GAAAAAAATCtaatggggatggttttggagtacaattccattgaatttca
aatggggattaaaacaaagacaatttcCCAGTTGGGTTGAcattttaggg
tatttttccgatttttccaATGGGAAATACTTTGATACAGGGTTGTTTAA
CAACTTAAGGAAAATTTCAATGCAATGGtccaagtttaaaaaaatataat
cttCCTGTCCTAATTTCTGTACCCTAAATCTTCAAGACCTGGTAGATTAC
TTTACTAAATGTAATGATTTCTATATCTAATATCTCGATATCTGTGTGCG
CTCAATTCCTAAAATTGAATCTTGAATCTCTTGAATTTACCATAGGTTAT
GGACATGTTGTAGCTAAATCTACCCTTGGCAGAGGATTGACAATATTGAT
AGCAATTTTTGGTATTCCAATGGCTTCAGCGACTGTTCTGTTTTGTGGCA
AAGCAATTAACAACACTATCAAATACCTCATTGTATGCTTTGAAAACACT
TGCTTGAAACGTGGCAAGATTGTATGGTTTAAACGCAAGGTGGCTACAAT
ACAATTTCTTATAACAATATTGACGTTTTGTTTGTATTCCTTGTACTATC
ATTTAACAATGTTCAACAATAGAAGTTTCTTTGAAGCTTTCTATTTCGTT
TGTATATCAATGTTGACTATCGGCTTTGGTGATATATCGCCTGATTTCGA
CTATGTTAGCAGTCTCACTACATTCCAAATCATTGGTTTATCAGCCGTTG
AGGTAACTTCATTCTTCTGGACTTTCTCTCTGATGGCATCTATCATTGAT
TTTTTAACATCACTTGAAACTGACCTTGCTGGATAtccaaagaaagaaaa
gaaaactattATGGATGAAAACTATGTTGCGAAAAATAATAACGCGATAG
ACCAGTAGGATGAAGCGATTGTTGAAAATGACAGCTTCTCAAACCAGGGA
AAATATTTGAACTTTTGCTGTTCTCCAAAGCAGAAAGATAGTCGTACGTA
CACCCCGTTAAATATTTTCCTAACTGTCCTTATCTACTGTGTGTATCCAT
GAAcgataagtaatagttatcagacagttgcgagtacaatacaAAAGATA
CTtcacgagttccgagatttttttgcataatatTTATATGCTATGTAAAA
AAATTCGGAACgagttttttttgaagaaaagtaaaaaataccaAACGAGG
AAGGAGCATTATTTAACACCAGAGGGTAAGAAGTCCAAATTGCTTTAAAC
ATATTAACTTTGAGCGCACGCAGCAGTTGGCCTTGACGTCAACAAGTAAT
TTCGTTTCTGAATACGAGCTTTAATCAAATTCATTGATTTtgtaaacttt
tgaaaatttgaatacacgcttttttttataagaataaattctttaagaat
atcagggtgagatttaaGAGTTAGAACAATAGACCTATTGTTTA Coding sequence (CDS) from alignment at scaffold_362:327391..329484+ >TCONS_00062176 ID=TCONS_00062176|Name=TCONS_00062176|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_362:327391..329484+ (Clytia hemisphaerica)
CAAAGAATAAACTCACATGATAAGATGATTTTAACCAAAATCGAAGAATC
AAAGCAACAGTTCAAAACTGAGATTATCAATAATTTGAAGAAATATGTTG
TATTCCTCGTTGCCCTCCTAGTAGGTCTTTGTATAACGACAATTATCTTT
TTCTACGTCGAAGAATGCTATTTTCATGTTCCCGAACAGTGTCCAGCCAA
TAACCAACAAACTTTCGAACTTTGTCAAAATGTCGATACAAAGAACCAGA
CGACAACCTTGAATTATACTGAAGCTTTTGAAATTTATAccaaaattact
aaattttgtAATCACATTGAATTGGTTGAATGCAATAAGGATGGATTTAT
AATAACTTCAAAGGAAAATTGTGATTTTACAACAACCAGTTTTATTAAAT
GGATGAGTTTTTTATGCTCAACTGTTTTTACAATTGGTTATGGACATGTT
GTAGCTAAATCTACCCTTGGCAGAGGATTGACAATATTGATAGCAATTTT
TGGTATTCCAATGGCTTCAGCGACTGTTCTGTTTTGTGGCAAAGCAATTA
ACAACACTATCAAATACCTCATTGTATGCTTTGAAAACACTTGCTTGAAA
CGTGGCAAGATTGTATGGTTTAAACGCAAGGTGGCTACAATACAATTTCT
TATAACAATATTGACGTTTTGTTTGTATTCCTTGTACTATCATTTAACAA
TGTTCAACAATAGAAGTTTCTTTGAAGCTTTCTATTTCGTTTGTATATCA
ATGTTGACTATCGGCTTTGGTGATATATCGCCTGATTTCGACTATGTTAG
CAGTCTCACTACATTCCAAATCATTGGTTTATCAGCCGTTGAGGTAACTT
CATTCTTCTGGACTTTCTCTCTGATGGCATCTATCATTGATTTTTTAACA
TCACTTGAAACTGACCTTGCTGGATAtccaaagaaagaaaagaaaactat
tATGGATGAAAACTATGTTGCGAAAAATAATAACGCGATAGACCAGTAGC
AAAGAATAAACTCACATGATAAGATGATTTTAACCAAAATCGAAGAATCA
AAGCAACAGTTCAAAACTGAGATTATCAATAATTTGAAGAAATATGTTGT
ATTCCTCGTTGCCCTCCTAGTAGGTCTTTGTATAACGACAATTATCTTTT
TCTACGTCGAAGAATGCTATTTTCATGTTCCCGAACAGTGTCCAGCCAAT
AACCAACAAACTTTCGAACTTTGTCAAAATGTCGATACAAAGAACCAGAC
GACAACCTTGAATTATACTGAAGCTTTTGAAATTTATAccaaaattacta
aattttgtAATCACATTGAATTGGTTGAATGCAATAAGGATGGATTTATA
ATAACTTCAAAGGAAAATTGTGATTTTACAACAACCAGTTTTATTAAATG
GATGAGTTTTTTATGCTCAACTGTTTTTACAATTGGTTATGGACATGTTG
TAGCTAAATCTACCCTTGGCAGAGGATTGACAATATTGATAGCAATTTTT
GGTATTCCAATGGCTTCAGCGACTGTTCTGTTTTGTGGCAAAGCAATTAA
CAACACTATCAAATACCTCATTGTATGCTTTGAAAACACTTGCTTGAAAC
GTGGCAAGATTGTATGGTTTAAACGCAAGGTGGCTACAATACAATTTCTT
ATAACAATATTGACGTTTTGTTTGTATTCCTTGTACTATCATTTAACAAT
GTTCAACAATAGAAGTTTCTTTGAAGCTTTCTATTTCGTTTGTATATCAA
TGTTGACTATCGGCTTTGGTGATATATCGCCTGATTTCGACTATGTTAGC
AGTCTCACTACATTCCAAATCATTGGTTTATCAGCCGTTGAGGTAACTTC
ATTCTTCTGGACTTTCTCTCTGATGGCATCTATCATTGATTTTTTAACAT
CACTTGAAACTGACCTTGCTGGATAtccaaagaaagaaaagaaaactatt
ATGGATGAAAACTATGTTGCGAAAAATAATAACGCGATAGACCAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062176-exon-scaffold_362-1491911889:327391..327828 | TCONS_00062176-exon-scaffold_362-1491911889:327391..327828 | Clytia hemisphaerica | exon |
| TCONS_00062176-exon-scaffold_362-1510915933:327391..327828 | TCONS_00062176-exon-scaffold_362-1510915933:327391..327828 | Clytia hemisphaerica | exon |
| TCONS_00062176-exon-scaffold_362-1575043694:327391..327828 | TCONS_00062176-exon-scaffold_362-1575043694:327391..327828 | Clytia hemisphaerica | exon |
| TCONS_00062176-exon-scaffold_362-1491911889:328386..329484 | TCONS_00062176-exon-scaffold_362-1491911889:328386..329484 | Clytia hemisphaerica | exon |
| TCONS_00062176-exon-scaffold_362-1510915933:328386..329484 | TCONS_00062176-exon-scaffold_362-1510915933:328386..329484 | Clytia hemisphaerica | exon |
| TCONS_00062176-exon-scaffold_362-1575043694:328386..329484 | TCONS_00062176-exon-scaffold_362-1575043694:328386..329484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:327391..329484 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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