TCONS_00062133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062133
Unique NameTCONS_00062133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062133 ID=TCONS_00062133|Name=TCONS_00062133|organism=Clytia hemisphaerica|type=transcript|length=551bp
CAACAACAATCTAACTCAACCATACAACAGCTTGTACGTTTTTCTATGTT
ACAAAAGGGAATATGTTTGCTTGAACCACCAAGAATAAGCTTCATCTATT
TTGCCTTGCCAAGCGTTTGTTGAATCTTGGAACATTAGGCAGTGGAAAGC
GAGACACGCGTTTAGCACGGATCAATAATATGAAACGGTCGCACGTTTCC
GTAGCGATTTGTATCATTTGTGGTGTGGCTATTGTTTGCTTGTTGTACTT
TCGATCTGGAAATGAAGACTTGTGTGAATCAAACACTTCCACAAGATCCT
CCTTGAATGGAACATTGTCGTCAGCTCCTCAAAAAGACACTCTTTTAGTG
AACAATGTCAGGCTGATGCGAACCTCTAACTTGACGAGAGTGCGCTAGAT
TTTTTGATATCTAATCTACTAAAGAATCGAAAAACTGAGGACAGTCAGAC
AAAAGGATCTTGGGtatttgaaaaatggaaaagttgTAAATTTTTCTAAT
ACGTTCTTtatttataataaaaaataaattattttcaagataAAATATTA
c
Run BLAST on NCBI

transcript from alignment at scaffold_361:1471597..1472147

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062133 ID=TCONS_00062133|Name=TCONS_00062133|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at scaffold_361:1471597..1472147 (Clytia hemisphaerica)
gTAATATTTtatcttgaaaataatttattttttattataaataAAGAACG
TATTAGAAAAATTTAcaacttttccatttttcaaataCCCAAGATCCTTT
TGTCTGACTGTCCTCAGTTTTTCGATTCTTTAGTAGATTAGATATCAAAA
AATCTAGCGCACTCTCGTCAAGTTAGAGGTTCGCATCAGCCTGACATTGT
TCACTAAAAGAGTGTCTTTTTGAGGAGCTGACGACAATGTTCCATTCAAG
GAGGATCTTGTGGAAGTGTTTGATTCACACAAGTCTTCATTTCCAGATCG
AAAGTACAACAAGCAAACAATAGCCACACCACAAATGATACAAATCGCTA
CGGAAACGTGCGACCGTTTCATATTATTGATCCGTGCTAAACGCGTGTCT
CGCTTTCCACTGCCTAATGTTCCAAGATTCAACAAACGCTTGGCAAGGCA
AAATAGATGAAGCTTATTCTTGGTGGTTCAAGCAAACATATTCCCTTTTG
TAACATAGAAAAACGTACAAGCTGTTGTATGGTTGAGTTAGATTGTTGTT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038956XLOC_038956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062133-exon-scaffold_361-1491911889:1471597..1472147TCONS_00062133-exon-scaffold_361-1491911889:1471597..1472147Clytia hemisphaericaexon
TCONS_00062133-exon-scaffold_361-1510915933:1471597..1472147TCONS_00062133-exon-scaffold_361-1510915933:1471597..1472147Clytia hemisphaericaexon
TCONS_00062133-exon-scaffold_361-1575043694:1471597..1472147TCONS_00062133-exon-scaffold_361-1575043694:1471597..1472147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1471597..1472147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103736	0	0	0	0	0	0	0	0.262249	0.324838	0	0.138175	9.17588	9.95914	0.11781	0.189642	0	0	1.54383	0.576968	0	0	0	0	0	0.0994012	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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