TCONS_00062132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062132
Unique NameTCONS_00062132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062132 ID=TCONS_00062132|Name=TCONS_00062132|organism=Clytia hemisphaerica|type=transcript|length=664bp
TGAGCCTACCGCTGTCACTGCATGAAGATACTTTGATATTTATAAACATT
GACAATGGTTTGCTCAAAAGGTCACTCCTCCCATTCATGCCACCCATTGA
GCAAGTCAATTATTTCAACCAGCATGTGTAACAGTGGTTTAACTATTTGC
ACAGTGTTTTTAGAAATCATAAAACTCTCTTTTCTGTACATTCATCTGCC
AATCTGTGTTTTCTTCGAAGGCTATCTCAACCTTTTTTCAAGCTTAGATT
ATGTTATTGGACTGGGAGTATGATCATCTGTGGCTTTCATATACTTAAAG
GCCATCGGACGATCTTTATTAGTAATGCAGTTTAGTATTGCAATTTCAGT
TTCAAGAAGAGATACTCTCACGCAATATGGGGAAGTAAAAGAATTGATCT
TGGGGCTAGATAAAGTTTTTCGTGTTCAATAAAATTTTGGTGATACGAAT
TTATTCTCGTCGTTGCGTTAAATATTTGTTACGTCATCACAATGTGATCA
TTTTTCTTGGGATTCATCGACCACGAATCAGATTTAAAAGTGTAGAGAAT
TGTAAAAGATATGCATGTATATTGAGATTTTGTTAATAGACAAATGAGCT
TTGTTTTGTCGCggataatttgattttaagccACAATATTTATACGTCTG
AGACTATGGAGATT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1417209..1417872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062132 ID=TCONS_00062132|Name=TCONS_00062132|organism=Clytia hemisphaerica|type=transcript|length=664bp|location=Sequence derived from alignment at scaffold_361:1417209..1417872 (Clytia hemisphaerica)
AATCTCCATAGTCTCAGACGTATAAATATTGTggcttaaaatcaaattat
ccGCGACAAAACAAAGCTCATTTGTCTATTAACAAAATCTCAATATACAT
GCATATCTTTTACAATTCTCTACACTTTTAAATCTGATTCGTGGTCGATG
AATCCCAAGAAAAATGATCACATTGTGATGACGTAACAAATATTTAACGC
AACGACGAGAATAAATTCGTATCACCAAAATTTTATTGAACACGAAAAAC
TTTATCTAGCCCCAAGATCAATTCTTTTACTTCCCCATATTGCGTGAGAG
TATCTCTTCTTGAAACTGAAATTGCAATACTAAACTGCATTACTAATAAA
GATCGTCCGATGGCCTTTAAGTATATGAAAGCCACAGATGATCATACTCC
CAGTCCAATAACATAATCTAAGCTTGAAAAAAGGTTGAGATAGCCTTCGA
AGAAAACACAGATTGGCAGATGAATGTACAGAAAAGAGAGTTTTATGATT
TCTAAAAACACTGTGCAAATAGTTAAACCACTGTTACACATGCTGGTTGA
AATAATTGACTTGCTCAATGGGTGGCATGAATGGGAGGAGTGACCTTTTG
AGCAAACCATTGTCAATGTTTATAAATATCAAAGTATCTTCATGCAGTGA
CAGCGGTAGGCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038955XLOC_038955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062132-exon-scaffold_361-1491911889:1417209..1417872TCONS_00062132-exon-scaffold_361-1491911889:1417209..1417872Clytia hemisphaericaexon
TCONS_00062132-exon-scaffold_361-1510915933:1417209..1417872TCONS_00062132-exon-scaffold_361-1510915933:1417209..1417872Clytia hemisphaericaexon
TCONS_00062132-exon-scaffold_361-1575043694:1417209..1417872TCONS_00062132-exon-scaffold_361-1575043694:1417209..1417872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1417209..1417872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.701758	0.304144	0.794566	1.72746	0.420604	0.332367	0.200493	0	0.131413	0.081388	0	0.0519296	0.20743	0.323127	0.177103	0.237573	0.351204	0.179987	0	0.173471	0.452333	0.441264	0.0894024	0.162559	0	0.149429	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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