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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062128 ID=TCONS_00062128|Name=TCONS_00062128|organism=Clytia hemisphaerica|type=transcript|length=3053bp
TTTAGATTCTAAATCGAAtaagaaaacaatggaaattgGAATAAAGAAAT
AAACAATGCATTGTGACGTAGCTGGTTTATAATGATGTCATTGAGTAATT
TGCGCAAGAACCGTTTCGTTTTGGTGCTCCTCTTCATCCTCTCTGCACTA
GCgtacatttttatcaaacagaaacAAACGGAAAACAGGAGGCTCGTAGA
ACGAATAGAGAACGTTAAAAACACTATCCCACCAAGTCTATATTCAAATA
TTcgaaaactaaaagaaaaattatacaCGTTAGAATTTAATAACAATGCA
CGGACACAAGAACTCTTATCACTTCAACGGAAATTACAGACTCGTATGGG
AGAAAATGTAACAAATGAAGGCTATTTATCTTTACCGAGCATTTATAATT
ATCTACCACATCTGTTGGGTCATAAAGACGCATTAGTGCCGCTTGTGCAC
CACCCGGTCAAAGAGCGGAAAACCAGGACTTTAACATTTGGTATTCCAAC
GGTCCGACGTACCAAAAAGTCCTATTTACTGAAAACTTTACAATCCCTGG
TACATGGGTTATCTGCTGAGGAGCGTGATGACGTCATTCTTATTGTTTAC
ATCGGCGAGAAGAATTCGGAATACGTCAGAGAAATTTATACGGAGATCAA
AAGTCAGTTTCCTGCAGAATTGGATGACGGTTTCATAGAGGTTATTTCTC
CTCCGTCCAATTTTTATCCTGATTTAGATAACCTACCACCGACTTTTAAC
GATCCAATAGAACGTGTACGATGGAGAGCCAAACAAAATTTAGATTACGC
TTTTCTGATGATGTATGCGCAAAGTAGGTCCATGTTTTATGTGCAGATGG
AGGATGATCTAATGGCGACGCCCTCTTACGCCAGCACCATCAAGGCGTTC
GCTATTCAACAGCAAAGCAATAattggttaatgattgaattttctTCTCT
CGGTTTCATcggaaaacttttcaaatcaaGTGATTTAAGTACCCTTGTTG
AGTTCTTCTTAatgttttataaagaaaagccgAACGATTGGTTACTTGAT
CATATATTCTGGGTCAAAGTTTGTCATCCAGAAAAAAATGCTAAACATTG
TAATAAAGAGAAATCAAAGTTGAGAATCAAATTCAAACCTTCACTTTTTC
AGCACATTGGAAAAGAATCATCATTAAAAGGTAAAACGCAAAAACTTGTT
GACAAAGAATTTAAGAAACAAGCATTATTTCATTCCCATCTAAACCCGAA
AGCTACAATCAAAACGGACCTGGAAGAATACCAAAAGTTCACAGCAGAAC
GGGCGTATTTAGGACACACTTACATGTGGGCGTTGTCACCCGTCAAGAAT
GCTGTCTTGAGAATGGTTTTCGAACAGCCAGAACATATCGAACGCTTCTA
TTTCAAATCCGGAAATGTTGAGCATCCCGGAGATAAATTAGTAAATGGAA
CAGTCGAGGTACTGAAGTCTGCGACTAAAAAAAGTAAGTTTTTAATCGAG
GACCCAACTGATAAGCGAGGACCGTACAAAGACTCTGATTATGTCATCGT
TGGGAAATTTGACTTTATGGGCGTAGCTTCGGGTGTTATTTCGCCCTCCT
TATTGCCAATTTCTGAAATGAGAATTCGAGTAACGCATGACGTTGCTAAA
AACTGGGTCATTCTAAGTGAATTCAATTTGATCAAACAGAAAAAGACCAA
AAGGTAGTATTAATATATAATTTTAAGTGTCGTTTTGTACGTATGctttg
ttttgagaaaaaagcGGAACTAAGTGTTTACGAAAAATCTTCTTCGTCCA
TACAGATAAACATTTAATGATGAGATTTTCCCCTACTTCTTCTTCTTAGA
AAATCTGACTAAAATAACCTTAATTCTGTCATCGATCTATTTAACGGATA
AAATggtaaaaacattttgtttaaaTAATAACATTTAGTAAACTTAAGAG
TTTCGTTTCGTTCCatttttttatagaatcgctgtATACGAGATTATCAA
TATTTATTTAACATCTTTTAGCATATACATTATTTTCCAATTATTTACAG
CTTGTTTACTACGCCCTCTTCTCACTTGCCCTgcataaaatttgtaaaaa
tatatttgggtgAGATCTGTAGATACTAACATACCCAACAATGAGGATGT
GTATTTTTGTTCTAGTGGGTAAGGGGCGATTAGGGatttgatacaggggt
gtatgcaATTCATGGTGAAAGGGTATATCATGGAAGAGGCTTGAAGTTCG
GATAGTATTCATCCTTGTCTATTCATGGTATGCATCATTAcaatgtcttc
tatcattactctcgggtacctaatagccgtccccctcccgctaattaatt
tttcgaacattttccacccaggacattcttattccaaccctcccgcttat
taatttttgggaaaatgtttttgaaagttcccctACTtattttgtcctaa
ttctgctgtattagcttacttttcaaaaattttccacccaggacattttt
attccaacccctcccccgcttattaagttttgagagtttttccaatcccc
ctgcttattccaatccccccggctattaggtacccaagagtacatcacgg
acccaacagctgatttgttgtaagtgacgtaaattcagtcaatacgtcac
tttcaaccaatcagctgttgggtccgttgaagacattgcaatggtgcata
tcatgaatttggaTCATCCATATAGTACATACGCAGTGAAAAGGAGGGGA
GAGGGgttagcaaaagcgtacgtctattgtttgaatgacgtcatttctat
tgtttttttcgTACAAGGGTAGAAGGGATATTTGGAATGTTTTTGCGTAC
GTAATATATATGGATGACCCATATGTTTTGGAATAGCTAGTGAAATTTta
caattagttttttttttaatctgctCATTATTTTAGCTTGTATAATAGGA
TTATATATTACCAATGAGGAGCATGGAATTTATAagataaaaatgtcttt
agtTATTAGGGTAGTATAAAACTTTCCCCTCGCAGTTTCACAGTAGAATG
TCA Run BLAST on NCBI protein sequence of TCONS_00062128-protein >TCONS_00062128-protein ID=TCONS_00062128-protein|Name=TCONS_00062128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MMSLSNLRKNRFVLVLLFILSALAYIFIKQKQTENRRLVERIENVKNTIP
PSLYSNIRKLKEKLYTLEFNNNARTQELLSLQRKLQTRMGENVTNEGYLS
LPSIYNYLPHLLGHKDALVPLVHHPVKERKTRTLTFGIPTVRRTKKSYLL
KTLQSLVHGLSAEERDDVILIVYIGEKNSEYVREIYTEIKSQFPAELDDG
FIEVISPPSNFYPDLDNLPPTFNDPIERVRWRAKQNLDYAFLMMYAQSRS
MFYVQMEDDLMATPSYASTIKAFAIQQQSNNWLMIEFSSLGFIGKLFKSS
DLSTLVEFFLMFYKEKPNDWLLDHIFWVKVCHPEKNAKHCNKEKSKLRIK
FKPSLFQHIGKESSLKGKTQKLVDKEFKKQALFHSHLNPKATIKTDLEEY
QKFTAERAYLGHTYMWALSPVKNAVLRMVFEQPEHIERFYFKSGNVEHPG
DKLVNGTVEVLKSATKKSKFLIEDPTDKRGPYKDSDYVIVGKFDFMGVAS
GVISPSLLPISEMRIRVTHDVAKNWVILSEFNLIKQKKTKR Run BLAST on NCBI transcript from alignment at scaffold_361:1260403..1263455 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062128 ID=TCONS_00062128|Name=TCONS_00062128|organism=Clytia hemisphaerica|type=transcript|length=3053bp|location=Sequence derived from alignment at scaffold_361:1260403..1263455 (Clytia hemisphaerica)
TGACATTCTACTGTGAAACTGCGAGGGGAAAGTTTTATACTACCCTAATA
actaaagacatttttatctTATAAATTCCATGCTCCTCATTGGTAATATA
TAATCCTATTATACAAGCTAAAATAATGagcagattaaaaaaaaaactaa
ttgtaAAATTTCACTAGCTATTCCAAAACATATGGGTCATCCATATATAT
TACGTACGCAAAAACATTCCAAATATCCCTTCTACCCTTGTAcgaaaaaa
acaatagaaatgacgtcattcaaacaatagacgtacgcttttgctaacCC
CTCTCCCCTCCTTTTCACTGCGTATGTACTATATGGATGAtccaaattca
tgatatgcaccattgcaatgtcttcaacggacccaacagctgattggttg
aaagtgacgtattgactgaatttacgtcacttacaacaaatcagctgttg
ggtccgtgatgtactcttgggtacctaatagccggggggattggaataag
cagggggattggaaaaactctcaaaacttaataagcgggggaggggttgg
aataaaaatgtcctgggtggaaaatttttgaaaagtaagctaatacagca
gaattaggacaaaataAGTaggggaactttcaaaaacattttcccaaaaa
ttaataagcgggagggttggaataagaatgtcctgggtggaaaatgttcg
aaaaattaattagcgggagggggacggctattaggtacccgagagtaatg
atagaagacattgTAATGATGCATACCATGAATAGACAAGGATGAATACT
ATCCGAACTTCAAGCCTCTTCCATGATATACCCTTTCACCATGAATtgca
tacacccctgtatcaaatCCCTAATCGCCCCTTACCCACTAGAACAAAAA
TACACATCCTCATTGTTGGGTATGTTAGTATCTACAGATCTcacccaaat
atatttttacaaattttatgcAGGGCAAGTGAGAAGAGGGCGTAGTAAAC
AAGCTGTAAATAATTGGAAAATAATGTATATGCTAAAAGATGTTAAATAA
ATATTGATAATCTCGTATacagcgattctataaaaaaatGGAACGAAACG
AAACTCTTAAGTTTACTAAATGTTATTAtttaaacaaaatgtttttaccA
TTTTATCCGTTAAATAGATCGATGACAGAATTAAGGTTATTTTAGTCAGA
TTTTCTAAGAAGAAGAAGTAGGGGAAAATCTCATCATTAAATGTTTATCT
GTATGGACGAAGAAGATTTTTCGTAAACACTTAGTTCCgcttttttctca
aaacaaagCATACGTACAAAACGACACTTAAAATTATATATTAATACTAC
CTTTTGGTCTTTTTCTGTTTGATCAAATTGAATTCACTTAGAATGACCCA
GTTTTTAGCAACGTCATGCGTTACTCGAATTCTCATTTCAGAAATTGGCA
ATAAGGAGGGCGAAATAACACCCGAAGCTACGCCCATAAAGTCAAATTTC
CCAACGATGACATAATCAGAGTCTTTGTACGGTCCTCGCTTATCAGTTGG
GTCCTCGATTAAAAACTTACTTTTTTTAGTCGCAGACTTCAGTACCTCGA
CTGTTCCATTTACTAATTTATCTCCGGGATGCTCAACATTTCCGGATTTG
AAATAGAAGCGTTCGATATGTTCTGGCTGTTCGAAAACCATTCTCAAGAC
AGCATTCTTGACGGGTGACAACGCCCACATGTAAGTGTGTCCTAAATACG
CCCGTTCTGCTGTGAACTTTTGGTATTCTTCCAGGTCCGTTTTGATTGTA
GCTTTCGGGTTTAGATGGGAATGAAATAATGCTTGTTTCTTAAATTCTTT
GTCAACAAGTTTTTGCGTTTTACCTTTTAATGATGATTCTTTTCCAATGT
GCTGAAAAAGTGAAGGTTTGAATTTGATTCTCAACTTTGATTTCTCTTTA
TTACAATGTTTAGCATTTTTTTCTGGATGACAAACTTTGACCCAGAATAT
ATGATCAAGTAACCAATCGTTcggcttttctttataaaacatTAAGAAGA
ACTCAACAAGGGTACTTAAATCACttgatttgaaaagttttccgATGAAA
CCGAGAGAagaaaattcaatcattaaccaatTATTGCTTTGCTGTTGAAT
AGCGAACGCCTTGATGGTGCTGGCGTAAGAGGGCGTCGCCATTAGATCAT
CCTCCATCTGCACATAAAACATGGACCTACTTTGCGCATACATCATCAGA
AAAGCGTAATCTAAATTTTGTTTGGCTCTCCATCGTACACGTTCTATTGG
ATCGTTAAAAGTCGGTGGTAGGTTATCTAAATCAGGATAAAAATTGGACG
GAGGAGAAATAACCTCTATGAAACCGTCATCCAATTCTGCAGGAAACTGA
CTTTTGATCTCCGTATAAATTTCTCTGACGTATTCCGAATTCTTCTCGCC
GATGTAAACAATAAGAATGACGTCATCACGCTCCTCAGCAGATAACCCAT
GTACCAGGGATTGTAAAGTTTTCAGTAAATAGGACTTTTTGGTACGTCGG
ACCGTTGGAATACCAAATGTTAAAGTCCTGGTTTTCCGCTCTTTGACCGG
GTGGTGCACAAGCGGCACTAATGCGTCTTTATGACCCAACAGATGTGGTA
GATAATTATAAATGCTCGGTAAAGATAAATAGCCTTCATTTGTTACATTT
TCTCCCATACGAGTCTGTAATTTCCGTTGAAGTGATAAGAGTTCTTGTGT
CCGTGCATTGTTATTAAATTCTAACGtgtataatttttcttttagttttc
gAATATTTGAATATAGACTTGGTGGGATAGTGTTTTTAACGTTCTCTATT
CGTTCTACGAGCCTCCTGTTTTCCGTTTgtttctgtttgataaaaatgta
cGCTAGTGCAGAGAGGATGAAGAGGAGCACCAAAACGAAACGGTTCTTGC
GCAAATTACTCAATGACATCATTATAAACCAGCTACGTCACAATGCATTG
TTTATTTCTTTATTCcaatttccattgttttcttaTTCGATTTAGAATCT
AAA Coding sequence (CDS) from alignment at scaffold_361:1260403..1263455 >TCONS_00062128 ID=TCONS_00062128|Name=TCONS_00062128|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at scaffold_361:1260403..1263455 (Clytia hemisphaerica)
CTACCTTTTGGTCTTTTTCTGTTTGATCAAATTGAATTCACTTAGAATGA
CCCAGTTTTTAGCAACGTCATGCGTTACTCGAATTCTCATTTCAGAAATT
GGCAATAAGGAGGGCGAAATAACACCCGAAGCTACGCCCATAAAGTCAAA
TTTCCCAACGATGACATAATCAGAGTCTTTGTACGGTCCTCGCTTATCAG
TTGGGTCCTCGATTAAAAACTTACTTTTTTTAGTCGCAGACTTCAGTACC
TCGACTGTTCCATTTACTAATTTATCTCCGGGATGCTCAACATTTCCGGA
TTTGAAATAGAAGCGTTCGATATGTTCTGGCTGTTCGAAAACCATTCTCA
AGACAGCATTCTTGACGGGTGACAACGCCCACATGTAAGTGTGTCCTAAA
TACGCCCGTTCTGCTGTGAACTTTTGGTATTCTTCCAGGTCCGTTTTGAT
TGTAGCTTTCGGGTTTAGATGGGAATGAAATAATGCTTGTTTCTTAAATT
CTTTGTCAACAAGTTTTTGCGTTTTACCTTTTAATGATGATTCTTTTCCA
ATGTGCTGAAAAAGTGAAGGTTTGAATTTGATTCTCAACTTTGATTTCTC
TTTATTACAATGTTTAGCATTTTTTTCTGGATGACAAACTTTGACCCAGA
ATATATGATCAAGTAACCAATCGTTcggcttttctttataaaacatTAAG
AAGAACTCAACAAGGGTACTTAAATCACttgatttgaaaagttttccgAT
GAAACCGAGAGAagaaaattcaatcattaaccaatTATTGCTTTGCTGTT
GAATAGCGAACGCCTTGATGGTGCTGGCGTAAGAGGGCGTCGCCATTAGA
TCATCCTCCATCTGCACATAAAACATGGACCTACTTTGCGCATACATCAT
CAGAAAAGCGTAATCTAAATTTTGTTTGGCTCTCCATCGTACACGTTCTA
TTGGATCGTTAAAAGTCGGTGGTAGGTTATCTAAATCAGGATAAAAATTG
GACGGAGGAGAAATAACCTCTATGAAACCGTCATCCAATTCTGCAGGAAA
CTGACTTTTGATCTCCGTATAAATTTCTCTGACGTATTCCGAATTCTTCT
CGCCGATGTAAACAATAAGAATGACGTCATCACGCTCCTCAGCAGATAAC
CCATGTACCAGGGATTGTAAAGTTTTCAGTAAATAGGACTTTTTGGTACG
TCGGACCGTTGGAATACCAAATGTTAAAGTCCTGGTTTTCCGCTCTTTGA
CCGGGTGGTGCACAAGCGGCACTAATGCGTCTTTATGACCCAACAGATGT
GGTAGATAATTATAAATGCTCGGTAAAGATAAATAGCCTTCATTTGTTAC
ATTTTCTCCCATACGAGTCTGTAATTTCCGTTGAAGTGATAAGAGTTCTT
GTGTCCGTGCATTGTTATTAAATTCTAACGtgtataatttttcttttagt
tttcgAATATTTGAATATAGACTTGGTGGGATAGTGTTTTTAACGTTCTC
TATTCGTTCTACGAGCCTCCTGTTTTCCGTTTgtttctgtttgataaaaa
tgtacGCTAGTGCAGAGAGGATGAAGAGGAGCACCAAAACGAAACGGTTC
TTGCGCAAATTACTCAATGACATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062128-exon-scaffold_361-1491911889:1260403..1263455 | TCONS_00062128-exon-scaffold_361-1491911889:1260403..1263455 | Clytia hemisphaerica | exon |
| TCONS_00062128-exon-scaffold_361-1510915933:1260403..1263455 | TCONS_00062128-exon-scaffold_361-1510915933:1260403..1263455 | Clytia hemisphaerica | exon |
| TCONS_00062128-exon-scaffold_361-1575043694:1260403..1263455 | TCONS_00062128-exon-scaffold_361-1575043694:1260403..1263455 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1260403..1263455 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006759 | Glyco_transf_54 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016758 | transferase activity, transferring hexosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
Blast
BLAST of TCONS_00062128 vs. Swiss-Prot (Human)
Match: MGT4B (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B OS=Homo sapiens GN=MGAT4B PE=1 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 2.554e-149 Identity = 227/447 (50.78%), Postives = 305/447 (68.23%), Query Frame = 1
Query: 355 NVTNEGYLSLPSIYNYLPHLLGHKDALVPLVHHPVKERKTRTLTFGIPTVRRTKKSYLLKTLQSLVHGLSAEERDDVILIVYIGEKNSEYVREIYTEIKSQFPAELDDGFIEVISPPSNFYPDLDNLPPTFNDPIERVRWRAKQNLDYAFLMMYAQSRSMFYVQMEDDLMATPSYASTIKAFAIQQQSNNWLMIEFSSLGFIGKLFKSSDLSTLVEFFLMFYKEKPNDWLLDHIFWVKVCHPEKNAKHCNKEKSKLRIKFKPSLFQHIGKESSLKGKTQKLVDKEFKKQALFHSHLNPKATIKTDLEEYQKFTAERAYLGHTYMWALSPVKNAVLRMVFEQPEHIERFYFKSGNVEHPGDKLVNGTVEVLKSATKKS--KFLIEDPTDK-RGPYKDSDYVIVGKFDFMGVASGVISPSLLPISEMRIRVTHDVAKNWVILSEFNLIK 1686
N ++ L LP+++++LPHLL + +L P V + R ++ GIP+VRR SYL TL SL+ LS +E++D +++V I E +S+Y + IK+ FP E+ G +EVISP +FYPD L +F DP ERVRWR KQNLDY FLMMYAQS+ ++YVQ+EDD++A P+Y ST+K FA+QQ S +W+++EFS LGFIGK+FKS DLS +VEF LMFY++KP DWLLDHI WVKVC+PEK+AKHC+++K+ LRI+FKPSLFQH+G SSL GK QKL DK+F KQAL H+NP A + T L+ YQ FT E+AYL + WA +P +R F QP +ERF+F+SGN+EHP DKL N +VEVL +S + L E T R P Y+ +G F + GVA G + P+ P+ +R+ + D + WVILSE L K
Sbjct: 103 NGSHRHVLHLPTVFHHLPHLLAKESSLQPAVR-VGQGRTGVSVVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSF-YKGVAEGEVDPAFGPLEALRLSIQTD-SPVWVILSEIFLKK 546
The following BLAST results are available for this feature:
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