TCONS_00062115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062115
Unique NameTCONS_00062115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062115 ID=TCONS_00062115|Name=TCONS_00062115|organism=Clytia hemisphaerica|type=transcript|length=522bp
ACCTCCTCTACCTCTAAAATTGAATCGTCCACGATTAGGTCGAGATCTTC
CACCACGATTTGATCTATCACGGTAATTTCCATAGTAAACTTCTTCCGCT
TCCTCGTCTCTGCTTGTTGTCTCAATGTCATCTCATCTCGCGACTCAAAC
TTCACCTGATTGTTTACAGCACCTACATCCTTGCTCTTGTTTGAAGATAC
CGAGAGGCTCAAATCTCCAAAAACCTTGCGTAGTTGGTCTTTCATTGAAT
TGTAAGATAGCTCAGTCATTGTTGCTCTAATTAACTTTTCGTGTGAATCT
GAGATGTTTGCATTATTGAGGAACTCGTACGCTAAGATACCATCAGGAAG
AATCATTTCGTAAGCTTTGGCTTTGTTGTACAGACGCTCAAACTCAACAA
CAAAATCTGCAATTGGCATATCATTGGGTCGTTTAAACTTCCGAAAACTG
TCATATGCTTGAAACGAGAGTTGCAGCTTATCTTTGAGATACAGTTTATC
TAGTTGTGCAAGCACCTTGCTC
Run BLAST on NCBI

protein sequence of TCONS_00062115-protein

>TCONS_00062115-protein ID=TCONS_00062115-protein|Name=TCONS_00062115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
SKVLAQLDKLYLKDKLQLSFQAYDSFRKFKRPNDMPIADFVVEFERLYNK
AKAYEMILPDGILAYEFLNNANISDSHEKLIRATMTELSYNSMKDQLRKV
FGDLSLSVSSNKSKDVGAVNNQVKFESRDEMTLRQQAETRKRKKFTMEIT
VIDQIVVEDLDLIVDDSILEVEE
Run BLAST on NCBI

transcript from alignment at scaffold_361:925649..926170

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062115 ID=TCONS_00062115|Name=TCONS_00062115|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at scaffold_361:925649..926170 (Clytia hemisphaerica)
GAGCAAGGTGCTTGCACAACTAGATAAACTGTATCTCAAAGATAAGCTGC
AACTCTCGTTTCAAGCATATGACAGTTTTCGGAAGTTTAAACGACCCAAT
GATATGCCAATTGCAGATTTTGTTGTTGAGTTTGAGCGTCTGTACAACAA
AGCCAAAGCTTACGAAATGATTCTTCCTGATGGTATCTTAGCGTACGAGT
TCCTCAATAATGCAAACATCTCAGATTCACACGAAAAGTTAATTAGAGCA
ACAATGACTGAGCTATCTTACAATTCAATGAAAGACCAACTACGCAAGGT
TTTTGGAGATTTGAGCCTCTCGGTATCTTCAAACAAGAGCAAGGATGTAG
GTGCTGTAAACAATCAGGTGAAGTTTGAGTCGCGAGATGAGATGACATTG
AGACAACAAGCAGAGACGAGGAAGCGGAAGAAGTTTACTATGGAAATTAC
CGTGATAGATCAAATCGTGGTGGAAGATCTCGACCTAATCGTGGACGATT
CAATTTTAGAGGTAGAGGAGGT

Coding sequence (CDS) from alignment at scaffold_361:925649..926170

>TCONS_00062115 ID=TCONS_00062115|Name=TCONS_00062115|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_361:925649..926170 (Clytia hemisphaerica)
AGCAAGGTGCTTGCACAACTAGATAAACTGTATCTCAAAGATAAGCTGCA
ACTCTCGTTTCAAGCATATGACAGTTTTCGGAAGTTTAAACGACCCAATG
ATATGCCAATTGCAGATTTTGTTGTTGAGTTTGAGCGTCTGTACAACAAA
GCCAAAGCTTACGAAATGATTCTTCCTGATGGTATCTTAGCGTACGAGTT
CCTCAATAATGCAAACATCTCAGATTCACACGAAAAGTTAATTAGAGCAA
CAATGACTGAGCTATCTTACAATTCAATGAAAGACCAACTACGCAAGGTT
TTTGGAGATTTGAGCCTCTCGGTATCTTCAAACAAGAGCAAGGATGTAGG
TGCTGTAAACAATCAGGTGAAGTTTGAGTCGCGAGATGAGATGACATTGA
GACAACAAGCAGAGACGAGGAAGCGGAAGAAGTTTACTATGGAAATTACC
GTGATAGATCAAATCGTGGTGGAAGATCTCGACCTAATCGTGGACGATTC
AATTTTAGAGGTAGAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038938XLOC_038938Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062115-proteinTCONS_00062115-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062115-exon-scaffold_361-1491911889:925649..926170TCONS_00062115-exon-scaffold_361-1491911889:925649..926170Clytia hemisphaericaexon
TCONS_00062115-exon-scaffold_361-1510915933:925649..926170TCONS_00062115-exon-scaffold_361-1510915933:925649..926170Clytia hemisphaericaexon
TCONS_00062115-exon-scaffold_361-1575043694:925649..926170TCONS_00062115-exon-scaffold_361-1575043694:925649..926170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:925649..926170 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95152	3.40604	2.79376	4.77227	5.555	3.87865	4.73312	4.12679	1.95895	3.73884	2.28647	2.5501	2.66431	3.18766	2.26136	3.0085	1.64725	3.4343	1.33244	2.13312	4.61683	3.64512	1.3275	1.25202	4.21917	5.85408	1.78393	1.61606	2.92168	2.89378
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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