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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062110 ID=TCONS_00062110|Name=TCONS_00062110|organism=Clytia hemisphaerica|type=transcript|length=1522bp
CCAGgagaaatttgaatatattaAAGATGTCAACAATGAAACATTGCATG
TTTATACCACCAGAATTTGGAGGCAAAGAAATTTCACCCTTTGCTTTATG
GGATCAATTTGATTTGGATTCTGTTGATCAAGGATTTGATGAAACTGGTC
AATATTATCTTCTATTTCAAGACGATTTTGACCAGATGTGCATTATTCAA
GCTGTTTATTTTGATCACGAGTTACTGAAACTGAAGAGCAATCTTATAGA
AATCAAATTCCCAGAAATTGAAGTTGAGAATCCAATCAGgtcttttttat
ttgacaaacATGGAGCACAAGTTGTACATGCTAtccaaagatattcaaaa
aatggaGTAGATCGTGTTGATttgtatcatttttgtttttatggtCTATT
GATAACCAAATGTGATCATCATATTGAGATTGATAACAGTCAAAAAGCTG
ATCTGTCTTTAGAATATGTTCGTTCTGAACGTTTTTCTTTTGTGAAATTT
GATTATCAATGTCGTCATAGAGAAGTGACCACTTTGATGGTTCATGCTTT
TAACCGATTACCTTGTCATAATAATGATAgaacaaaacaaagagttgACT
TGATTCATACATCAAATGGTAAAATTTGGCATTCAAGAACAATCTTGCTT
GATTTAAATGTCTGTATCAGGTATATATCAAGTTTTAGTGAtgttaactt
gtttttaacaagGGATATGCTTTATGTGTATGGTaatattgtcaataaaa
cttttaaaacctGGCAGTTTGATTTAAATGGACAATATATAACATCATAC
TGCTCTCTAGCTCCTGTTGATGGTATTAATGGCTTGAACCATCATAACCA
TTACTTACATGTTTTATCTTCTGGGGAAAATGATGATGAGCTCAGACGTA
TATTGAAATTGCGACATGGTAAAGTGGAAGTTTTAGTAGAATGGGATAAT
GGTGTTTTAACTGGTTTTGTCCAGCCTGATCGTAGAGAAAATTTTATTGT
TGATGGTATTTTAAATCGGTTTGGTCAGATTTTAGCACAATAtcgtattt
tcaaagaaaatggttTGTGTCAGTTTCATTTTGTTGATTTGAAAACAAAC
GAAACTGTGATGGAGTTTTGTGTTCCAAAAGATCCAATgagttatggaaa
tttcaacTTGAATTGGAATTCAAGAGAGTATTCATTGACATATTTTGATA
ATGAACATCTTTTCAAAGTATCCAGAATAAATTCACATCAAATCACTTTG
AAGCATTTTGCCAGATTAGCTGTTTTGACTTCATTCAGTGAGGAATATTT
GGCTAAACAAAATCTGCCAAAATCATTGTTTGATTATCTTGGAATTGACA
AATAACATTCATTCaagttttgtatatatttttttatagatttatcAAAG
GAGACTTAGCAACATTTGTACCGCTTATTGTTTTGCCATCCTGTGTTTTT
GGACCTAATTTAAGGGGGGTCCTATAAATCAACCTGTTTATGCCTGTCCA
TCCGTCTGTTATGAggttttct Run BLAST on NCBI protein sequence of TCONS_00062110-protein >TCONS_00062110-protein ID=TCONS_00062110-protein|Name=TCONS_00062110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
RRNLNILKMSTMKHCMFIPPEFGGKEISPFALWDQFDLDSVDQGFDETGQ
YYLLFQDDFDQMCIIQAVYFDHELLKLKSNLIEIKFPEIEVENPIRSFLF
DKHGAQVVHAIQRYSKNGVDRVDLYHFCFYGLLITKCDHHIEIDNSQKAD
LSLEYVRSERFSFVKFDYQCRHREVTTLMVHAFNRLPCHNNDRTKQRVDL
IHTSNGKIWHSRTILLDLNVCIRYISSFSDVNLFLTRDMLYVYGNIVNKT
FKTWQFDLNGQYITSYCSLAPVDGINGLNHHNHYLHVLSSGENDDELRRI
LKLRHGKVEVLVEWDNGVLTGFVQPDRRENFIVDGILNRFGQILAQYRIF
KENGLCQFHFVDLKTNETVMEFCVPKDPMSYGNFNLNWNSREYSLTYFDN
EHLFKVSRINSHQITLKHFARLAVLTSFSEEYLAKQNLPKSLFDYLGIDK Run BLAST on NCBI transcript from alignment at scaffold_361:756517..758038 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062110 ID=TCONS_00062110|Name=TCONS_00062110|organism=Clytia hemisphaerica|type=transcript|length=1522bp|location=Sequence derived from alignment at scaffold_361:756517..758038 (Clytia hemisphaerica)
agaaaaccTCATAACAGACGGATGGACAGGCATAAACAGGTTGATTTATA
GGACCCCCCTTAAATTAGGTCCAAAAACACAGGATGGCAAAACAATAAGC
GGTACAAATGTTGCTAAGTCTCCTTTgataaatctataaaaaaatatata
caaaacttGAATGAATGTTATTTGTCAATTCCAAGATAATCAAACAATGA
TTTTGGCAGATTTTGTTTAGCCAAATATTCCTCACTGAATGAAGTCAAAA
CAGCTAATCTGGCAAAATGCTTCAAAGTGATTTGATGTGAATTTATTCTG
GATACTTTGAAAAGATGTTCATTATCAAAATATGTCAATGAATACTCTCT
TGAATTCCAATTCAAgttgaaatttccataactcATTGGATCTTTTGGAA
CACAAAACTCCATCACAGTTTCGTTTGTTTTCAAATCAACAAAATGAAAC
TGACACAaaccattttctttgaaaatacgaTATTGTGCTAAAATCTGACC
AAACCGATTTAAAATACCATCAACAATAAAATTTTCTCTACGATCAGGCT
GGACAAAACCAGTTAAAACACCATTATCCCATTCTACTAAAACTTCCACT
TTACCATGTCGCAATTTCAATATACGTCTGAGCTCATCATCATTTTCCCC
AGAAGATAAAACATGTAAGTAATGGTTATGATGGTTCAAGCCATTAATAC
CATCAACAGGAGCTAGAGAGCAGTATGATGTTATATATTGTCCATTTAAA
TCAAACTGCCaggttttaaaagttttattgacaatattACCATACACATA
AAGCATATCCcttgttaaaaacaagttaacaTCACTAAAACTTGATATAT
ACCTGATACAGACATTTAAATCAAGCAAGATTGTTCTTGAATGCCAAATT
TTACCATTTGATGTATGAATCAAGTcaactctttgttttgttcTATCATT
ATTATGACAAGGTAATCGGTTAAAAGCATGAACCATCAAAGTGGTCACTT
CTCTATGACGACATTGATAATCAAATTTCACAAAAGAAAAACGTTCAGAA
CGAACATATTCTAAAGACAGATCAGCTTTTTGACTGTTATCAATCTCAAT
ATGATGATCACATTTGGTTATCAATAGaccataaaaacaaaaatgataca
aATCAACACGATCTACtccattttttgaatatctttggaTAGCATGTACA
ACTTGTGCTCCATgtttgtcaaataaaaaagacCTGATTGGATTCTCAAC
TTCAATTTCTGGGAATTTGATTTCTATAAGATTGCTCTTCAGTTTCAGTA
ACTCGTGATCAAAATAAACAGCTTGAATAATGCACATCTGGTCAAAATCG
TCTTGAAATAGAAGATAATATTGACCAGTTTCATCAAATCCTTGATCAAC
AGAATCCAAATCAAATTGATCCCATAAAGCAAAGGGTGAAATTTCTTTGC
CTCCAAATTCTGGTGGTATAAACATGCAATGTTTCATTGTTGACATCTTt
aatatattcaaatttctcCTGG Coding sequence (CDS) from alignment at scaffold_361:756517..758038 >TCONS_00062110 ID=TCONS_00062110|Name=TCONS_00062110|organism=Clytia hemisphaerica|type=CDS|length=1353bp|location=Sequence derived from alignment at scaffold_361:756517..758038 (Clytia hemisphaerica)
TTATTTGTCAATTCCAAGATAATCAAACAATGATTTTGGCAGATTTTGTT
TAGCCAAATATTCCTCACTGAATGAAGTCAAAACAGCTAATCTGGCAAAA
TGCTTCAAAGTGATTTGATGTGAATTTATTCTGGATACTTTGAAAAGATG
TTCATTATCAAAATATGTCAATGAATACTCTCTTGAATTCCAATTCAAgt
tgaaatttccataactcATTGGATCTTTTGGAACACAAAACTCCATCACA
GTTTCGTTTGTTTTCAAATCAACAAAATGAAACTGACACAaaccattttc
tttgaaaatacgaTATTGTGCTAAAATCTGACCAAACCGATTTAAAATAC
CATCAACAATAAAATTTTCTCTACGATCAGGCTGGACAAAACCAGTTAAA
ACACCATTATCCCATTCTACTAAAACTTCCACTTTACCATGTCGCAATTT
CAATATACGTCTGAGCTCATCATCATTTTCCCCAGAAGATAAAACATGTA
AGTAATGGTTATGATGGTTCAAGCCATTAATACCATCAACAGGAGCTAGA
GAGCAGTATGATGTTATATATTGTCCATTTAAATCAAACTGCCaggtttt
aaaagttttattgacaatattACCATACACATAAAGCATATCCcttgtta
aaaacaagttaacaTCACTAAAACTTGATATATACCTGATACAGACATTT
AAATCAAGCAAGATTGTTCTTGAATGCCAAATTTTACCATTTGATGTATG
AATCAAGTcaactctttgttttgttcTATCATTATTATGACAAGGTAATC
GGTTAAAAGCATGAACCATCAAAGTGGTCACTTCTCTATGACGACATTGA
TAATCAAATTTCACAAAAGAAAAACGTTCAGAACGAACATATTCTAAAGA
CAGATCAGCTTTTTGACTGTTATCAATCTCAATATGATGATCACATTTGG
TTATCAATAGaccataaaaacaaaaatgatacaaATCAACACGATCTACt
ccattttttgaatatctttggaTAGCATGTACAACTTGTGCTCCATgttt
gtcaaataaaaaagacCTGATTGGATTCTCAACTTCAATTTCTGGGAATT
TGATTTCTATAAGATTGCTCTTCAGTTTCAGTAACTCGTGATCAAAATAA
ACAGCTTGAATAATGCACATCTGGTCAAAATCGTCTTGAAATAGAAGATA
ATATTGACCAGTTTCATCAAATCCTTGATCAACAGAATCCAAATCAAATT
GATCCCATAAAGCAAAGGGTGAAATTTCTTTGCCTCCAAATTCTGGTGGT
ATAAACATGCAATGTTTCATTGTTGACATCTTtaatatattcaaatttct
cCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062110-exon-scaffold_361-1491911889:756517..758038 | TCONS_00062110-exon-scaffold_361-1491911889:756517..758038 | Clytia hemisphaerica | exon |
| TCONS_00062110-exon-scaffold_361-1510915933:756517..758038 | TCONS_00062110-exon-scaffold_361-1510915933:756517..758038 | Clytia hemisphaerica | exon |
| TCONS_00062110-exon-scaffold_361-1575043694:756517..758038 | TCONS_00062110-exon-scaffold_361-1575043694:756517..758038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:756517..758038 . |
Blast
The following BLAST results are available for this feature:
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