TCONS_00062108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062108
Unique NameTCONS_00062108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062108 ID=TCONS_00062108|Name=TCONS_00062108|organism=Clytia hemisphaerica|type=transcript|length=845bp
CTTGAGATATCCAATGCTTAATTGATACAGCTGACGAGTTTTGATGGAGA
AGAATCGATTGAGCACCTTTGAAGCCATTAGATTTCTGTGAACGTTGAGT
TGTTTTTCTTTTTCGTTCTGAACACCATCCATCTTTTCAAACATCAAAGA
CGCAGAGATCAGAGTTCGTTGAGTTTCGCGTGGTGAAGAACGATAATTAC
ACAGCACCGATAAACTTTCTATTTTTCAAAATGGCAGAAAAAACTTTCCT
TCGAGCTCTAAAATATGCGCCGGAATGGCCAATTCTTAAGCAATTCGTCT
TAATGGGTTGAGGCTAGCAATTCTTTAATTTTAGAGTTCGTTGGACCCCA
AAGGTAAATCGATAAAAAAAACAAAAACAAAGAAAAAGTTATCAATAAGG
ATGTAGAATATAGCGATGTTATGCTCTTTTATCGATAAGCAAGATGGAGA
ATTTAGCGATAGAAAGGTGTATCGATAAATAAAGAGGTTTTATCTGGGGT
TTATCGATAAACGACCTATATCTAACGATAACATTTATTTTTCTATCGAT
AAAAGTATTACTGTAACGATAGAAAACGATATCGTTAGTATCGTTAGCTA
CCCATCTATCGATCAAAATTATAATTGTTATCGTTGACTTCAGTTACTTT
ATCGATGAATTATCGTATCGATAAGATTATcgtagaaaacgaaagtgatc
ctTTTCCCATGGAAGGTCACAAATACACTTCTTTGAATATGGAGGTTTTA
TCTATTCGTCAAATGAAAGCAGAATAACCATTATTTACCCCCTAACCGAA
CCGGAAAAGACCCTTCAATTAGGTTTTTACGCCTCTATTTTCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_361:658812..659656

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062108 ID=TCONS_00062108|Name=TCONS_00062108|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at scaffold_361:658812..659656 (Clytia hemisphaerica)
GTTGAAAATAGAGGCGTAAAAACCTAATTGAAGGGTCTTTTCCGGTTCGG
TTAGGGGGTAAATAATGGTTATTCTGCTTTCATTTGACGAATAGATAAAA
CCTCCATATTCAAAGAAGTGTATTTGTGACCTTCCATGGGAAAaggatca
ctttcgttttctacgATAATCTTATCGATACGATAATTCATCGATAAAGT
AACTGAAGTCAACGATAACAATTATAATTTTGATCGATAGATGGGTAGCT
AACGATACTAACGATATCGTTTTCTATCGTTACAGTAATACTTTTATCGA
TAGAAAAATAAATGTTATCGTTAGATATAGGTCGTTTATCGATAAACCCC
AGATAAAACCTCTTTATTTATCGATACACCTTTCTATCGCTAAATTCTCC
ATCTTGCTTATCGATAAAAGAGCATAACATCGCTATATTCTACATCCTTA
TTGATAACTTTTTCTTTGTTTTTGTTTTTTTTATCGATTTACCTTTGGGG
TCCAACGAACTCTAAAATTAAAGAATTGCTAGCCTCAACCCATTAAGACG
AATTGCTTAAGAATTGGCCATTCCGGCGCATATTTTAGAGCTCGAAGGAA
AGTTTTTTCTGCCATTTTGAAAAATAGAAAGTTTATCGGTGCTGTGTAAT
TATCGTTCTTCACCACGCGAAACTCAACGAACTCTGATCTCTGCGTCTTT
GATGTTTGAAAAGATGGATGGTGTTCAGAACGAAAAAGAAAAACAACTCA
ACGTTCACAGAAATCTAATGGCTTCAAAGGTGCTCAATCGATTCTTCTCC
ATCAAAACTCGTCAGCTGTATCAATTAAGCATTGGATATCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038931XLOC_038931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062108-exon-scaffold_361-1491911889:658812..659656TCONS_00062108-exon-scaffold_361-1491911889:658812..659656Clytia hemisphaericaexon
TCONS_00062108-exon-scaffold_361-1510915933:658812..659656TCONS_00062108-exon-scaffold_361-1510915933:658812..659656Clytia hemisphaericaexon
TCONS_00062108-exon-scaffold_361-1575043694:658812..659656TCONS_00062108-exon-scaffold_361-1575043694:658812..659656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:658812..659656 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185498	0.114918	0.388531	0.59459	0.388229	0.237778	0.843819	0.275727	0.0940139	0.359415	0	0.297207	0.246902	0	0.0651075	0.0379966	0.0858526	0.128764	0.118596	0.0682528	0.39295	0.428329	0	0	0.246542	0.223384	0.711144	0.275451	0.128566	0.20297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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