|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062103 ID=TCONS_00062103|Name=TCONS_00062103|organism=Clytia hemisphaerica|type=transcript|length=1636bp
cgcgtcatctctattatttcaaataaccaattagtgaagtatcttataaa
aactccagctcatcccaaattGTCCGGCTAAGAGCAACACGAGTGACGCC
CTTAAGAGAAACAGTCGCCTGGAGGCAGACTCACTTGTTCAAATCAActc
ctttttaattttatacaCCATATTTTATAAAGCTCGAAATAGCATTCTTT
GGTTAAGAATCTCTCTATAAAGGCTACCAAGATTTTTAATCTTTATATCA
TTTCTTCGGTTTTTTGCGATGAAAAAAAGTCACATCTTGAAAGCGAATGT
TTTCTAAAACTAGAACGTCACGTCAAAGATTAGCTCAGAACGGAGAGAAG
AACTAAGAAGGAAAGACTGACTAAAGCTTGGAGATAAATCTTTATTGCTC
ATATTGAGTCTTTAACAAGCCAATTTTTGGTGGTTTAATTTAGTAATTTC
TGGTTCGGATTGTTTTTATAACCAACTTAAATTATAATACATAATGTTTA
TAAATCATTATACTACAGAAGTGAATGGTTATGGTGGAATCGGAGCATAT
CAAAACATGGGGAACTATTTGACTGGACTAAACCAACGAAAACGTAAAAC
ACCTTTTGACGGATTTGATAGTTCAGCAACCAAAACAATGTGCATTCCAT
CCAAACGCAGCTACCGAAGTGTACAGGATGAAgggagaaaaacaaaacaa
tctaaCCTGATGTTTGATAATGAAATAGAAGAGCCGAAAGCACAGCGCGC
GATCGCTAATATCCGCGAGCGACAACGAACTCAAGCGTTGAATCAAGCTT
TCAATTCTCTTCGCAAAATCATCCCTACACTTCCTTCAGATAAACTCTCC
AAAATACAAACTCTAAAACTTGCGGTCATGTATATCGAATTTTTGAGCAA
AGTCTTAGAATGTGATGAACAGAACACTTCCCATCAGCAAATCGATTTCA
TGCTAGCACAAGAGAAAATAAGTTACGCCTTTAGTGTATGGCGAATGGAA
GGCGACTTTTATGCTGCTAATGGTGGTTTTGGGGCGGCCCCCCATAACAA
AACAGGACATTATTTCACAGAACACGAGCTAAACTCTTGTACATATGAAT
TCAATCCTAACTTTGGTAACCAGCTTTTGTACAAACCTTTGACGTTGAAA
AGCAGTGAAAGTGAAAGCTCAGGaatcaaagaagaagaaaatgaaagaaa
taaagATGACGTCATGAACATTGAAAATCTCACGGCCCAACAAAGATATG
GTTGAGCCTTTTAAAAGCAAAAGTAATGAAAGTGTTTTTTGTAAATGTTG
TACATATATATGATAGAGAGATATCTTGATGTAATCTAGACACGTTTTAG
TGTAATAAACATGACTTGATTCTTCAGCCACACCCTAGATTGGATGGCGT
CAAGAAAATTCTTTCGTGAGCAGGTTGAATGTCTTTCTGCTATATatgga
aaagattttttgacacAAAATCACTTGATTCTTATTAGGTGTCAAAAAAT
AGAGATTTATCGTCTTCAAAAGAAAGTTCAAATCACGTATTTCATTTTAA
TATGATACATTCAACCTTTCGATAGAACAAAACAAGATATTATTcctaat
tttccaaattttaagttattcACTACTTCGATAATG Run BLAST on NCBI protein sequence of TCONS_00062103-protein >TCONS_00062103-protein ID=TCONS_00062103-protein|Name=TCONS_00062103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MFINHYTTEVNGYGGIGAYQNMGNYLTGLNQRKRKTPFDGFDSSATKTMC
IPSKRSYRSVQDEGRKTKQSNLMFDNEIEEPKAQRAIANIRERQRTQALN
QAFNSLRKIIPTLPSDKLSKIQTLKLAVMYIEFLSKVLECDEQNTSHQQI
DFMLAQEKISYAFSVWRMEGDFYAANGGFGAAPHNKTGHYFTEHELNSCT
YEFNPNFGNQLLYKPLTLKSSESESSGIKEEENERNKDDVMNIENLTAQQ
RYG Run BLAST on NCBI transcript from alignment at scaffold_361:514830..516465 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062103 ID=TCONS_00062103|Name=TCONS_00062103|organism=Clytia hemisphaerica|type=transcript|length=1636bp|location=Sequence derived from alignment at scaffold_361:514830..516465 (Clytia hemisphaerica)
CATTATCGAAGTAGTgaataacttaaaatttggaaaattaggAATAATAT
CTTGTTTTGTTCTATCGAAAGGTTGAATGTATCATATTAAAATGAAATAC
GTGATTTGAACTTTCTTTTGAAGACGATAAATCTCTATTTTTTGACACCT
AATAAGAATCAAGTGATTTTgtgtcaaaaaatcttttccatATATAGCAG
AAAGACATTCAACCTGCTCACGAAAGAATTTTCTTGACGCCATCCAATCT
AGGGTGTGGCTGAAGAATCAAGTCATGTTTATTACACTAAAACGTGTCTA
GATTACATCAAGATATCTCTCTATCATATATATGTACAACATTTACAAAA
AACACTTTCATTACTTTTGCTTTTAAAAGGCTCAACCATATCTTTGTTGG
GCCGTGAGATTTTCAATGTTCATGACGTCATctttatttctttcattttc
ttcttctttgattCCTGAGCTTTCACTTTCACTGCTTTTCAACGTCAAAG
GTTTGTACAAAAGCTGGTTACCAAAGTTAGGATTGAATTCATATGTACAA
GAGTTTAGCTCGTGTTCTGTGAAATAATGTCCTGTTTTGTTATGGGGGGC
CGCCCCAAAACCACCATTAGCAGCATAAAAGTCGCCTTCCATTCGCCATA
CACTAAAGGCGTAACTTATTTTCTCTTGTGCTAGCATGAAATCGATTTGC
TGATGGGAAGTGTTCTGTTCATCACATTCTAAGACTTTGCTCAAAAATTC
GATATACATGACCGCAAGTTTTAGAGTTTGTATTTTGGAGAGTTTATCTG
AAGGAAGTGTAGGGATGATTTTGCGAAGAGAATTGAAAGCTTGATTCAAC
GCTTGAGTTCGTTGTCGCTCGCGGATATTAGCGATCGCGCGCTGTGCTTT
CGGCTCTTCTATTTCATTATCAAACATCAGGttagattgttttgtttttc
tcccTTCATCCTGTACACTTCGGTAGCTGCGTTTGGATGGAATGCACATT
GTTTTGGTTGCTGAACTATCAAATCCGTCAAAAGGTGTTTTACGTTTTCG
TTGGTTTAGTCCAGTCAAATAGTTCCCCATGTTTTGATATGCTCCGATTC
CACCATAACCATTCACTTCTGTAGTATAATGATTTATAAACATTATGTAT
TATAATTTAAGTTGGTTATAAAAACAATCCGAACCAGAAATTACTAAATT
AAACCACCAAAAATTGGCTTGTTAAAGACTCAATATGAGCAATAAAGATT
TATCTCCAAGCTTTAGTCAGTCTTTCCTTCTTAGTTCTTCTCTCCGTTCT
GAGCTAATCTTTGACGTGACGTTCTAGTTTTAGAAAACATTCGCTTTCAA
GATGTGACTTTTTTTCATCGCAAAAAACCGAAGAAATGATATAAAGATTA
AAAATCTTGGTAGCCTTTATAGAGAGATTCTTAACCAAAGAATGCTATTT
CGAGCTTTATAAAATATGGtgtataaaattaaaaaggagTTGATTTGAAC
AAGTGAGTCTGCCTCCAGGCGACTGTTTCTCTTAAGGGCGTCACTCGTGT
TGCTCTTAGCCGGACaatttgggatgagctggagtttttataagatactt
cactaattggttatttgaaataatagagatgacgcg Coding sequence (CDS) from alignment at scaffold_361:514830..516465 >TCONS_00062103 ID=TCONS_00062103|Name=TCONS_00062103|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_361:514830..516465 (Clytia hemisphaerica)
TCAACCATATCTTTGTTGGGCCGTGAGATTTTCAATGTTCATGACGTCAT
ctttatttctttcattttcttcttctttgattCCTGAGCTTTCACTTTCA
CTGCTTTTCAACGTCAAAGGTTTGTACAAAAGCTGGTTACCAAAGTTAGG
ATTGAATTCATATGTACAAGAGTTTAGCTCGTGTTCTGTGAAATAATGTC
CTGTTTTGTTATGGGGGGCCGCCCCAAAACCACCATTAGCAGCATAAAAG
TCGCCTTCCATTCGCCATACACTAAAGGCGTAACTTATTTTCTCTTGTGC
TAGCATGAAATCGATTTGCTGATGGGAAGTGTTCTGTTCATCACATTCTA
AGACTTTGCTCAAAAATTCGATATACATGACCGCAAGTTTTAGAGTTTGT
ATTTTGGAGAGTTTATCTGAAGGAAGTGTAGGGATGATTTTGCGAAGAGA
ATTGAAAGCTTGATTCAACGCTTGAGTTCGTTGTCGCTCGCGGATATTAG
CGATCGCGCGCTGTGCTTTCGGCTCTTCTATTTCATTATCAAACATCAGG
ttagattgttttgtttttctcccTTCATCCTGTACACTTCGGTAGCTGCG
TTTGGATGGAATGCACATTGTTTTGGTTGCTGAACTATCAAATCCGTCAA
AAGGTGTTTTACGTTTTCGTTGGTTTAGTCCAGTCAAATAGTTCCCCATG
TTTTGATATGCTCCGATTCCACCATAACCATTCACTTCTGTAGTATAATG
ATTTATAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062103-exon-scaffold_361-1491911889:514830..516465 | TCONS_00062103-exon-scaffold_361-1491911889:514830..516465 | Clytia hemisphaerica | exon |
| TCONS_00062103-exon-scaffold_361-1510915933:514830..516465 | TCONS_00062103-exon-scaffold_361-1510915933:514830..516465 | Clytia hemisphaerica | exon |
| TCONS_00062103-exon-scaffold_361-1575043694:514830..516465 | TCONS_00062103-exon-scaffold_361-1575043694:514830..516465 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:514830..516465 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
BLAST of TCONS_00062103 vs. Swiss-Prot (Human)
Match: TWST2 (Twist-related protein 2 OS=Homo sapiens GN=TWIST2 PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.675e-33 Identity = 60/94 (63.83%), Postives = 76/94 (80.85%), Query Frame = 2
Query: 728 EEPKAQRAIANIRERQRTQALNQAFNSLRKIIPTLPSDKLSKIQTLKLAVMYIEFLSKVLECDEQNTSHQQIDFMLAQEKISYAFSVWRMEGDF 1009
EE ++QR +AN+RERQRTQ+LN+AF +LRKIIPTLPSDKLSKIQTLKLA YI+FL +VL+ DE + + +A E++SYAFSVWRMEG +
Sbjct: 62 EELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSY-VAHERLSYAFSVWRMEGAW 154
The following BLAST results are available for this feature:
|
