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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062098 ID=TCONS_00062098|Name=TCONS_00062098|organism=Clytia hemisphaerica|type=transcript|length=2111bp
ccaatcaaacacaatcgaatattacccaggaatcagctgtttgattgcga
ttcgattgcttTCGATAATCAAAtagcaattattcgatcgcgtttgATTA
CATTTGATTTGTTCAATCGCGATTTTCGTTCAAACTTGCtcgattgacac
cgcctggtcATTGCGACCTCCCTTGAATTTCAGAACCTCAGAATCAGAGT
GAAAAACAAGTATTTGTAATACACTCCAAATGATTGATATCATAATTTTG
TAAGATTCTTTAGGAGATGACTTATCATTTAAAATGATACTAGTGAAAAT
ATCTTTTTGGAAATAAATTGAAAGGCTACAGTTTAGATTTTTTGATTCCT
TGCTTTAGGGTAATACTAAAACACAACGAGCCTGAACGAGCCACAACGAG
CCACAAAATTGCACAACAAGTCAGAAAATAGCATCATAAGCCACAACGAG
CCACAATGAGCCAGAGAACGGCAAAACAAGCTACAACGACCCACAACGAG
CCAGAAAATGGCACAACGAGCCACAATGACCCACATGCCAGAAAATGGCA
CGAGCCAGAAAAAGAAGAGCCACAAAGAGCCACGAGCCGAAAAATGACAA
AACGAGCCGAAAAATGACACAACGAGCCGAAAAATTACACAACGAGATGG
AAAATGACACAATGAGCCACAACGATCCAGAAAACGGCATAGTTTGACCA
TGGTTTTCTCATTTGGTTGCTCCATAAAAACAGGATGTGTGTCATGGTAG
GTCTATCCTGTTAAAAGGATTGTCTTTGCCTTGGATGTCATTTCATTGGT
TTGTGAATCAGCATGGTCACACTTTCTTGCTTCAAAAGGATTacataatc
aaaaaataataagaaattaaggttcatgttttcaaaaatcagttcaAAAA
TTGAACTACCACGAACTGCCTTGATAGTAAAGAAAAAAGCagatgaaaag
aagaaatgtATGTAATATATGATATCTCAAAGTTTAAGTATCTATAATGC
AGTATGGAATGTCGGCCAATAATTAAACATAAAATAGTAAAGTAGAGTCA
ATTTCACATACACTTTCTGATCTGAGAAGTAAATACCTGTATGTAATTTC
CATTCAAAAGTTTTCATGCAATGTGGTGTCAAAGTTTTCaccttttcatt
caaaattaccgTCAACCACTCTAACTTAGGACAATTGGTtgttgaaacat
gggactgttcaGTGAGGATCTGATTTTTGCCTTGATTGCCCAAAACCTGT
AACCGttttagcttgagggaagaaaaaaattagagtttttgggtttgcca
aaaaaacaccttgtcaaaattttttcatcttcacaggatccattcccaac
ctcaaaagacatctttttgtctagggttttttttggcaagttcttccttc
gaagaatattgatcactttccttttcccctgaAGGCCGCGAGAGAAATTC
aatgtccattttagccaatttagagggttaaaatttcaaaattttcttgg
tcggccccaactataGATCTCTTATAGATCtcattttgaaacattaaaga
aacggtgcaaacagttttattcatctgccatttatccttgtaacttccaA
TTGTCTTTAGCACTTGCTggctagtcttcaaaataaagttgaaTGCTACA
AGAGggacgaaaattgaaaatttctcccgtcagcgcaaaccatggttgcg
catcctccgtaactaacattttcctctctttcttaaatgcttattcttag
atgcttattcttagatgcatcaaagacatcaggtcctttatttcaggaaa
atatatattcatagcaaagccttaaacagaaagaagcaacagaNgtcctt
tatttcaggaaaatatatattcataGCAAAGCCTTAAACAAAAAGAAGCA
ACAGATTTAtttatgaggtgtaattttgaGCAGATTGGCATTGGAATCCT
GTGCAGTCCTGTGATGTTTAaatcatattttggaaaaaagagagtaGATG
AGGACAATTTTAGCCATGctgaattgaaaatttctcttcGTTCCCCTTTT
CAAAACTATTCAcactaattcacaattaatgtcCATGGACCATGGGGAAA
ATGGCCTTCAT Run BLAST on NCBI transcript from alignment at scaffold_361:323737..325847 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062098 ID=TCONS_00062098|Name=TCONS_00062098|organism=Clytia hemisphaerica|type=transcript|length=2111bp|location=Sequence derived from alignment at scaffold_361:323737..325847 (Clytia hemisphaerica)
ATGAAGGCCATTTTCCCCATGGTCCATGgacattaattgtgaattagtgT
GAATAGTTTTGAAAAGGGGAACgaagagaaattttcaattcagCATGGCT
AAAATTGTCCTCATCtactctcttttttccaaaatatgattTAAACATCA
CAGGACTGCACAGGATTCCAATGCCAATCTGCtcaaaattacacctcata
aaTAAATCTGTTGCTTCTTTTTGTTTAAGGCTTTGCtatgaatatatatt
ttcctgaaataaaggacNtctgttgcttctttctgtttaaggctttgcta
tgaatatatattttcctgaaataaaggacctgatgtctttgatgcatcta
agaataagcatctaagaataagcatttaagaaagagaggaaaatgttagt
tacggaggatgcgcaaccatggtttgcgctgacgggagaaattttcaatt
ttcgtccCTCTTGTAGCAttcaactttattttgaagactagccAGCAAGT
GCTAAAGACAATtggaagttacaaggataaatggcagatgaataaaactg
tttgcaccgtttctttaatgtttcaaaatgaGATCTATAAGAGATCtata
gttggggccgaccaagaaaattttgaaattttaaccctctaaattggcta
aaatggacattGAATTTCTCTCGCGGCCTtcaggggaaaaggaaagtgat
caatattcttcgaaggaagaacttgccaaaaaaaaccctagacaaaaaga
tgtcttttgaggttgggaatggatcctgtgaagatgaaaaaattttgaca
aggtgtttttttggcaaacccaaaaactctaatttttttcttccctcaag
ctaaaaCGGTTACAGGTTTTGGGCAATCAAGGCAAAAATCAGATCCTCAC
tgaacagtcccatgtttcaacaACCAATTGTCCTAAGTTAGAGTGGTTGA
cggtaattttgaatgaaaaggtGAAAACTTTGACACCACATTGCATGAAA
ACTTTTGAATGGAAATTACATACAGGTATTTACTTCTCAGATCAGAAAGT
GTATGTGAAATTGACTCTACTTTACTATTTTATGTTTAATTATTGGCCGA
CATTCCATACTGCATTATAGATACTTAAACTTTGAGATATCATATATTAC
ATacatttcttcttttcatctGCTTTTTTCTTTACTATCAAGGCAGTTCG
TGGTAGTTCAATTTTtgaactgatttttgaaaacatgaaccttaatttct
tattattttttgattatgtAATCCTTTTGAAGCAAGAAAGTGTGACCATG
CTGATTCACAAACCAATGAAATGACATCCAAGGCAAAGACAATCCTTTTA
ACAGGATAGACCTACCATGACACACATCCTGTTTTTATGGAGCAACCAAA
TGAGAAAACCATGGTCAAACTATGCCGTTTTCTGGATCGTTGTGGCTCAT
TGTGTCATTTTCCATCTCGTTGTGTAATTTTTCGGCTCGTTGTGTCATTT
TTCGGCTCGTTTTGTCATTTTTCGGCTCGTGGCTCTTTGTGGCTCTTCTT
TTTCTGGCTCGTGCCATTTTCTGGCATGTGGGTCATTGTGGCTCGTTGTG
CCATTTTCTGGCTCGTTGTGGGTCGTTGTAGCTTGTTTTGCCGTTCTCTG
GCTCATTGTGGCTCGTTGTGGCTTATGATGCTATTTTCTGACTTGTTGTG
CAATTTTGTGGCTCGTTGTGGCTCGTTCAGGCTCGTTGTGTTTTAGTATT
ACCCTAAAGCAAGGAATCAAAAAATCTAAACTGTAGCCTTTCAATTTATT
TCCAAAAAGATATTTTCACTAGTATCATTTTAAATGATAAGTCATCTCCT
AAAGAATCTTACAAAATTATGATATCAATCATTTGGAGTGTATTACAAAT
ACTTGTTTTTCACTCTGATTCTGAGGTTCTGAAATTCAAGGGAGGTCGCA
ATgaccaggcggtgtcaatcgaGCAAGTTTGAACGAAAATCGCGATTGAA
CAAATCAAATGTAATcaaacgcgatcgaataattgctaTTTGATTATCGA
aagcaatcgaatcgcaatcaaacagctgattcctgggtaatattcgattg
tgtttgattgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062098-exon-scaffold_361-1491911889:323737..325847 | TCONS_00062098-exon-scaffold_361-1491911889:323737..325847 | Clytia hemisphaerica | exon |
| TCONS_00062098-exon-scaffold_361-1510915933:323737..325847 | TCONS_00062098-exon-scaffold_361-1510915933:323737..325847 | Clytia hemisphaerica | exon |
| TCONS_00062098-exon-scaffold_361-1575043694:323737..325847 | TCONS_00062098-exon-scaffold_361-1575043694:323737..325847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:323737..325847 . |
Blast
The following BLAST results are available for this feature:
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