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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062090 ID=TCONS_00062090|Name=TCONS_00062090|organism=Clytia hemisphaerica|type=transcript|length=1902bp
AGGAAAGCTTGCAAATCAGCATTCAATAACTTTGTCAAAAACTGTGTAAG
CCCAGATGGGGTAAATAATCCTAAGAAACTGTTTCGATTCATAAAATCCC
CTAAATATGAAAATGATGGAGTAGCACCCCTGCGAGACAATGGCAGCTTA
CACATTGATAACACCAAGAAAGCGAACATCCGCAACAAACAGTTTTCAAA
TGTCTTCTCCATTCCTGACGGTCGAATCCCACCCCTGCAGGGTCAAGCGA
ATACGCCCATGCCAGAAATTAATATCACAGAACCTGGTGTTCGGAAACTC
CTTAACGATATCAACCCTAACAAAGCTGCTGGTCCAGATGGTGTCTCATC
AAGATTTCTCAATGAGTTTGCTGACCAAATATCTCCTGGTCTTACCTTAG
TGATGCAAGCTTCACTCAAACAGTCTTCCATACCAGATGACTGGAGGCAT
GCCCTGGTTGCCCCTGTTTTCAAACCTGGTAAAACCAACAAATCCAAAGC
CTGTAACTACAGGCCTATCAGTCTTACCTCCATATCCTGTAAAATCTTGG
AGCATATTTTACACAGCAACATTATGGCCCACCTTGACAACACCAACATT
CTGACAGATAGCCAGCATGGTTTCAGGAAACATCGGTCAGGTGAATCACA
ACTTGTAACAACCATCCAAGACCTCGCTAAGTCCCTGAACGAAGCTAAGC
AAATCGACTCAATTCTACTTGACTTTTCAAAGGCTTTTGATAAAGTTGAC
CACAAAAAACTTTGTCTAAAACTTCATCATTATGGCGTAATGGGTAAACT
CTTGAATGGATCACCAACTACCTCTCCGATCGCACTCAAACTGTTGTCGT
TAATGGCGAgtcatctgaaaaagctaatgttATCTCTGGAGTTCCTCAAG
GCACAGTCCTCGGCCCTCTTctgtttttaattttagtttACATAAACGAT
CTTCCTGAATTGGTTAAATGTAAAATAAGATTGTTTGCTGATGATGCACT
CATTTACAGAGCCATTGACTCAATTAATGATGCCATAAGCCTTCAGGAAG
ACTTAAACCAACTCATGAATTGGGAACATGAATGGTCAATGGAGTTCAAC
CCGGAAAAATGTAAAGTTTTACGAATCACCAACAAGCGTAATACTATCAT
TCAACCATATTCAATGCACAACCAAGTACTTGAAGTTGTTGACTCAGCTG
GACTCAGCGAAATATCTAGGTGTGTATATCCATAAAAAACTCTCCTGGAA
TGTCCATAACGACTATACTGTTAAGAAAGCCAACCAAACTCGATGTTTCA
TACAAAGGAATCTCAGATCATGTCACCCAAATACAAAGCTTCAATGCTAC
AAAACCTATGTCCGACCCATCCTGGAATATGGGTCAGTCGTATGGGACCC
TCACTCAGCCTCCAACATCTATAAGCTGGAAATGGTTCAGAGGGAAGCTG
CACGCTTCATCTGGAATGACTGGCGACAAATGAGTAGTCCCTCATTGACG
CTTCGTAATCTTGATCTTAAAACCCTTCAAACCAGGAGAACAGCAAATAA
AGTTAAATTCATGCATAAAATTCTTCATGGCAAAGTTGAATCATTATCCG
CTCTTGCACCTCGTGCACGTAACACTCATCTTAAACTTATTCCAATCAAT
GCAAGGATTCAAACATACGAATTCAGTTACTTCCCGTCAACCATCCGACT
GTGGAATGAATTACCCGTGAATCTCATATCTGAGTTAAATTATgattctt
tttgtaaaggtgTCAATGAGCACTACACTTAACTTGTATGTATCATTCta
attgtttacattttgcctTCACTTGCTCATAACTCCTCCTGATTTCAAGC
TTTTTATTTTAGCTCTATTCCTGCTGTGCCTTAGTATCTAGTCTCAATCT
NN Run BLAST on NCBI protein sequence of TCONS_00062090-protein >TCONS_00062090-protein ID=TCONS_00062090-protein|Name=TCONS_00062090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
RKACKSAFNNFVKNCVSPDGVNNPKKLFRFIKSPKYENDGVAPLRDNGSL
HIDNTKKANIRNKQFSNVFSIPDGRIPPLQGQANTPMPEINITEPGVRKL
LNDINPNKAAGPDGVSSRFLNEFADQISPGLTLVMQASLKQSSIPDDWRH
ALVAPVFKPGKTNKSKACNYRPISLTSISCKILEHILHSNIMAHLDNTNI
LTDSQHGFRKHRSGESQLVTTIQDLAKSLNEAKQIDSILLDFSKAFDKVD
HKKLCLKLHHYGVMGKLLNGSPTTSPIALKLLSLMASHLKKLMLSLEFLK
AQSSALFCF Run BLAST on NCBI transcript from alignment at scaffold_361:123188..125089 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062090 ID=TCONS_00062090|Name=TCONS_00062090|organism=Clytia hemisphaerica|type=transcript|length=1902bp|location=Sequence derived from alignment at scaffold_361:123188..125089 (Clytia hemisphaerica)
NNAGATTGAGACTAGATACTAAGGCACAGCAGGAATAGAGCTAAAATAAA
AAGCTTGAAATCAGGAGGAGTTATGAGCAAGTGAaggcaaaatgtaaaca
attaGAATGATACATACAAGTTAAGTGTAGTGCTCATTGAcacctttaca
aaaagaatcATAATTTAACTCAGATATGAGATTCACGGGTAATTCATTCC
ACAGTCGGATGGTTGACGGGAAGTAACTGAATTCGTATGTTTGAATCCTT
GCATTGATTGGAATAAGTTTAAGATGAGTGTTACGTGCACGAGGTGCAAG
AGCGGATAATGATTCAACTTTGCCATGAAGAATTTTATGCATGAATTTAA
CTTTATTTGCTGTTCTCCTGGTTTGAAGGGTTTTAAGATCAAGATTACGA
AGCGTCAATGAGGGACTACTCATTTGTCGCCAGTCATTCCAGATGAAGCG
TGCAGCTTCCCTCTGAACCATTTCCAGCTTATAGATGTTGGAGGCTGAGT
GAGGGTCCCATACGACTGACCCATATTCCAGGATGGGTCGGACATAGGTT
TTGTAGCATTGAAGCTTTGTATTTGGGTGACATGATCTGAGATTCCTTTG
TATGAAACATCGAGTTTGGTTGGCTTTCTTAACAGTATAGTCGTTATGGA
CATTCCAGGAGAGTTTTTTATGGATATACACACCTAGATATTTCGCTGAG
TCCAGCTGAGTCAACAACTTCAAGTACTTGGTTGTGCATTGAATATGGTT
GAATGATAGTATTACGCTTGTTGGTGATTCGTAAAACTTTACATTTTTCC
GGGTTGAACTCCATTGACCATTCATGTTCCCAATTCATGAGTTGGTTTAA
GTCTTCCTGAAGGCTTATGGCATCATTAATTGAGTCAATGGCTCTGTAAA
TGAGTGCATCATCAGCAAACAATCTTATTTTACATTTAACCAATTCAGGA
AGATCGTTTATGTaaactaaaattaaaaacagAAGAGGGCCGAGGACTGT
GCCTTGAGGAACTCCAGAGATaacattagctttttcagatgacTCGCCAT
TAACGACAACAGTTTGAGTGCGATCGGAGAGGTAGTTGGTGATCCATTCA
AGAGTTTACCCATTACGCCATAATGATGAAGTTTTAGACAAAGTTTTTTG
TGGTCAACTTTATCAAAAGCCTTTGAAAAGTCAAGTAGAATTGAGTCGAT
TTGCTTAGCTTCGTTCAGGGACTTAGCGAGGTCTTGGATGGTTGTTACAA
GTTGTGATTCACCTGACCGATGTTTCCTGAAACCATGCTGGCTATCTGTC
AGAATGTTGGTGTTGTCAAGGTGGGCCATAATGTTGCTGTGTAAAATATG
CTCCAAGATTTTACAGGATATGGAGGTAAGACTGATAGGCCTGTAGTTAC
AGGCTTTGGATTTGTTGGTTTTACCAGGTTTGAAAACAGGGGCAACCAGG
GCATGCCTCCAGTCATCTGGTATGGAAGACTGTTTGAGTGAAGCTTGCAT
CACTAAGGTAAGACCAGGAGATATTTGGTCAGCAAACTCATTGAGAAATC
TTGATGAGACACCATCTGGACCAGCAGCTTTGTTAGGGTTGATATCGTTA
AGGAGTTTCCGAACACCAGGTTCTGTGATATTAATTTCTGGCATGGGCGT
ATTCGCTTGACCCTGCAGGGGTGGGATTCGACCGTCAGGAATGGAGAAGA
CATTTGAAAACTGTTTGTTGCGGATGTTCGCTTTCTTGGTGTTATCAATG
TGTAAGCTGCCATTGTCTCGCAGGGGTGCTACTCCATCATTTTCATATTT
AGGGGATTTTATGAATCGAAACAGTTTCTTAGGATTATTTACCCCATCTG
GGCTTACACAGTTTTTGACAAAGTTATTGAATGCTGATTTGCAAGCTTTC
CT Coding sequence (CDS) from alignment at scaffold_361:123188..125089 >TCONS_00062090 ID=TCONS_00062090|Name=TCONS_00062090|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_361:123188..125089 (Clytia hemisphaerica)
ttaaaaacagAAGAGGGCCGAGGACTGTGCCTTGAGGAACTCCAGAGATa
acattagctttttcagatgacTCGCCATTAACGACAACAGTTTGAGTGCG
ATCGGAGAGGTAGTTGGTGATCCATTCAAGAGTTTACCCATTACGCCATA
ATGATGAAGTTTTAGACAAAGTTTTTTGTGGTCAACTTTATCAAAAGCCT
TTGAAAAGTCAAGTAGAATTGAGTCGATTTGCTTAGCTTCGTTCAGGGAC
TTAGCGAGGTCTTGGATGGTTGTTACAAGTTGTGATTCACCTGACCGATG
TTTCCTGAAACCATGCTGGCTATCTGTCAGAATGTTGGTGTTGTCAAGGT
GGGCCATAATGTTGCTGTGTAAAATATGCTCCAAGATTTTACAGGATATG
GAGGTAAGACTGATAGGCCTGTAGTTACAGGCTTTGGATTTGTTGGTTTT
ACCAGGTTTGAAAACAGGGGCAACCAGGGCATGCCTCCAGTCATCTGGTA
TGGAAGACTGTTTGAGTGAAGCTTGCATCACTAAGGTAAGACCAGGAGAT
ATTTGGTCAGCAAACTCATTGAGAAATCTTGATGAGACACCATCTGGACC
AGCAGCTTTGTTAGGGTTGATATCGTTAAGGAGTTTCCGAACACCAGGTT
CTGTGATATTAATTTCTGGCATGGGCGTATTCGCTTGACCCTGCAGGGGT
GGGATTCGACCGTCAGGAATGGAGAAGACATTTGAAAACTGTTTGTTGCG
GATGTTCGCTTTCTTGGTGTTATCAATGTGTAAGCTGCCATTGTCTCGCA
GGGGTGCTACTCCATCATTTTCATATTTAGGGGATTTTATGAATCGAAAC
AGTTTCTTAGGATTATTTACCCCATCTGGGCTTACACAGTTTTTGACAAA
GTTATTGAATGCTGATTTGCAAGCTTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062090-exon-scaffold_361-1491911889:123188..125089 | TCONS_00062090-exon-scaffold_361-1491911889:123188..125089 | Clytia hemisphaerica | exon |
| TCONS_00062090-exon-scaffold_361-1510915933:123188..125089 | TCONS_00062090-exon-scaffold_361-1510915933:123188..125089 | Clytia hemisphaerica | exon |
| TCONS_00062090-exon-scaffold_361-1575043694:123188..125089 | TCONS_00062090-exon-scaffold_361-1575043694:123188..125089 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:123188..125089 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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