TCONS_00062083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062083
Unique NameTCONS_00062083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062083 ID=TCONS_00062083|Name=TCONS_00062083|organism=Clytia hemisphaerica|type=transcript|length=535bp
CCAAATCTCAACTCACATTATGTTGCCTCCAAGAAGTACGGTGGAGAGAC
GTTGGTACGAAAATAATTCGATTGGACTCCGGTGAAGAATTGAATTCCAC
TGGTTAGGATACAAGAAGAAACGTCAAGCAGGTGTCGGTATACTTGTCTG
GATACACAAAGATATTGACATTTCTACTCCCGACTTCTCAGACCTCCACG
TAATGGCAATCTATCTAAAGGTTAACGGGTTCAATATACGAGTTGTAAAC
GGCTACGCACCAACAGAAGCAGACGAACCCGATCAACAAAAACTCGTGTT
ATACTCAAATCTAAACAAAGCAATCGTAAAAACCCAAAAGAAACATAAGC
TTATCGTCGTCGGAAACTTCAACGCTACAACTACCATTTCGAATAAAAGA
TGCTTCTTCGACGGAAAGAAAATTATCACTGTTCCACTTTGTAATGACAA
TGGAAACCGATTAAAAGCATTTTGTCGTATTCATGTACTCTGTATTTCGA
TCACTTTCTTCAAGCACCGTATGATACATCGTTAT
Run BLAST on NCBI

protein sequence of TCONS_00062083-protein

>TCONS_00062083-protein ID=TCONS_00062083-protein|Name=TCONS_00062083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MAIYLKVNGFNIRVVNGYAPTEADEPDQQKLVLYSNLNKAIVKTQKKHKL
IVVGNFNATTTISNKRCFFDGKKIITVPLCNDNGNRLKAFCRIHVLCISI
TFFKHRMIHRY
Run BLAST on NCBI

transcript from alignment at scaffold_361:18335..18869

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062083 ID=TCONS_00062083|Name=TCONS_00062083|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_361:18335..18869 (Clytia hemisphaerica)
ATAACGATGTATCATACGGTGCTTGAAGAAAGTGATCGAAATACAGAGTA
CATGAATACGACAAAATGCTTTTAATCGGTTTCCATTGTCATTACAAAGT
GGAACAGTGATAATTTTCTTTCCGTCGAAGAAGCATCTTTTATTCGAAAT
GGTAGTTGTAGCGTTGAAGTTTCCGACGACGATAAGCTTATGTTTCTTTT
GGGTTTTTACGATTGCTTTGTTTAGATTTGAGTATAACACGAGTTTTTGT
TGATCGGGTTCGTCTGCTTCTGTTGGTGCGTAGCCGTTTACAACTCGTAT
ATTGAACCCGTTAACCTTTAGATAGATTGCCATTACGTGGAGGTCTGAGA
AGTCGGGAGTAGAAATGTCAATATCTTTGTGTATCCAGACAAGTATACCG
ACACCTGCTTGACGTTTCTTCTTGTATCCTAACCAGTGGAATTCAATTCT
TCACCGGAGTCCAATCGAATTATTTTCGTACCAACGTCTCTCCACCGTAC
TTCTTGGAGGCAACATAATGTGAGTTGAGATTTGG

Coding sequence (CDS) from alignment at scaffold_361:18335..18869

>TCONS_00062083 ID=TCONS_00062083|Name=TCONS_00062083|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_361:18335..18869 (Clytia hemisphaerica)
ATAACGATGTATCATACGGTGCTTGAAGAAAGTGATCGAAATACAGAGTA
CATGAATACGACAAAATGCTTTTAATCGGTTTCCATTGTCATTACAAAGT
GGAACAGTGATAATTTTCTTTCCGTCGAAGAAGCATCTTTTATTCGAAAT
GGTAGTTGTAGCGTTGAAGTTTCCGACGACGATAAGCTTATGTTTCTTTT
GGGTTTTTACGATTGCTTTGTTTAGATTTGAGTATAACACGAGTTTTTGT
TGATCGGGTTCGTCTGCTTCTGTTGGTGCGTAGCCGTTTACAACTCGTAT
ATTGAACCCGTTAACCTTTAGATAGATTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038906XLOC_038906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062083-exon-scaffold_361-1491911889:18335..18869TCONS_00062083-exon-scaffold_361-1491911889:18335..18869Clytia hemisphaericaexon
TCONS_00062083-exon-scaffold_361-1510915933:18335..18869TCONS_00062083-exon-scaffold_361-1510915933:18335..18869Clytia hemisphaericaexon
TCONS_00062083-exon-scaffold_361-1575043694:18335..18869TCONS_00062083-exon-scaffold_361-1575043694:18335..18869Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062083-proteinTCONS_00062083-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:18335..18869 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326482	0.424496	1.10898	0.361655	0.44028	0.463886	0.419745	0.261973	0.0917068	0	0	0.144957	0.579022	0.375825	0.370775	0.198949	0.245089	0.502417	0	0.242114	0	0.461906	0.249559	0.340328	0.584216	0.938518	1.79069	0.955535	0.48316	0.738395
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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