TCONS_00062079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062079
Unique NameTCONS_00062079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062079 ID=TCONS_00062079|Name=TCONS_00062079|organism=Clytia hemisphaerica|type=transcript|length=1924bp
TCAAtagtgaaataaaaagaaatataagaaagaaaaatggcagaagaacc
aaaagaaattccatcttCAACATCTAATGAACAAGCAACGACAGAAACAA
CAGTTCCACCACTCAAAGGGGTTGAAGTCGAGATAAATAAAAAGGTACAC
GAAGAACAAAATGAAAAGGCGAACGAGGAACAAAGTGAAAAGGCAAAcga
ggaaaaaagtgaaaaggcGAACGAGGAACAAAAAAAAGAGCAAGTGACCG
AAGAGGAAAAGATGGAGGTTGAAGAGAGTGGGGAACAGGAGAAGGCACAA
CTTCTTGAAGAGGAAGAATTGTTGATGGAGGAATCAGGAGAGACCACCGA
CACTTCATCTGAAAAAGCCAATGAGAGTAGAGATTACTTTGACGAGGACG
AAATGTTCCAATGTCTGGAGTGCAAAACTAAAGAATGTGCTATGTGGAGA
AAATCGAAAGATAAACAAGGTGTGATTTGTAATCTTTGTCACTTGGAGCG
TATCAAGGGCGACTCGGCCACTAACGCCCCTGGCCAGGGTGGAACAAATA
GCAATAACAATGCAGCATCTTCTTCAACCAGCAAAACGTCATCTTCTCTA
ATGCAACCACCCATGAAAGCCAAAGATGTTCGAATctccaaaagaaaaaa
taaacaaaataagAAATTTACAAACGGTTTTTACGGCGATCGTATTATAA
AGAGTGGCCACTCTAAAAGTCGTCGTTCATTGTACAAAAGAAAGCCCATG
AAATCCGTGCTCGGTTCGTCCACTATCGTGGCTTCACAGTCTATTTATCA
TGACGGTCTGTTATACCGAGTAGGGGATATTGTTTGCACGTCAGACATCG
AAGGGGGGACTTACTATGCACAATTAAGAGGTTTCTTACAAGACGAATAC
TGCGAAAAATCTGCAGTCATCACTTGGTTAATTCCCACCAAACGAAATGT
CACCAAATTCGACCCGATGCTTTTCGTGCCAGGGTTAGACGAAGAGACAC
CACGCCCAATGTCGTGTTTTAGTTTCGTTTGTCGCGCATCCACCAACCTT
TTTAAAGCTCCGAACATGCATCCACCTTATCACCGCTCACAATGTGACCT
CAACGACCTCATACATGTCGCCAACGCCATGAATACTGAATCAACTGAAG
ATCACCAGCTGACAACAGAAGGGGAAAGCTGAAAGAAGACACCATTTACT
TGGAGAACTTGGATTTTGATATACGTCGATGTTCATTTGgtgaacaagat
tggaaaatCACTAACGAGACCAATGGAGATAAAAACGGATTTTGATGTAT
TTCAATGTTCATTTTTAGCTTTTGGTGAACAAGATTGGTGTGTATTCTAT
TGGAGAGTCAAAAATGAGTCAAATGGAATTAATGATCAACCCAGTGTGGA
TTCACCTATACTCGCTGGTATTTAGTATTGGATACCGTGGTCTTTAGATT
GCCAATATTTCACAGCGCTTACGTGTGTTGTGATTGAATGTTGTTACACA
AAGTAAACTGAATTCCTGAAAATTTGGCGTTTTCGTTCAAAGGGAGATCT
TGGTAAtattagctctagtttagacggcacAATTTCCATCCTccctattc
taattgtaaatTAAAGCGGGCAAAAAGTTGTCTGTCttaagtcaatgcat
tgccctcttctGACGTCAatacaatgtcttctttcaatcttttccaagca
aagatttttaGCTGCCAACTTTGCGCCCACTTTTCgtctactctaacaat
tagaataggcagagCAGAAAGTCGACCGTCtaaactaccttaaaggaaga
aattttggcgggaatttaatttggcggatggctgaaaaagttttttcaga
gggaatttaatttggcggatagctggataaagtaaatttgacgggaattt
aatttggcggttgcaggatatttt
Run BLAST on NCBI

protein sequence of TCONS_00062079-protein

>TCONS_00062079-protein ID=TCONS_00062079-protein|Name=TCONS_00062079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MAEEPKEIPSSTSNEQATTETTVPPLKGVEVEINKKVHEEQNEKANEEQS
EKANEEKSEKANEEQKKEQVTEEEKMEVEESGEQEKAQLLEEEELLMEES
GETTDTSSEKANESRDYFDEDEMFQCLECKTKECAMWRKSKDKQGVICNL
CHLERIKGDSATNAPGQGGTNSNNNAASSSTSKTSSSLMQPPMKAKDVRI
SKRKNKQNKKFTNGFYGDRIIKSGHSKSRRSLYKRKPMKSVLGSSTIVAS
QSIYHDGLLYRVGDIVCTSDIEGGTYYAQLRGFLQDEYCEKSAVITWLIP
TKRNVTKFDPMLFVPGLDEETPRPMSCFSFVCRASTNLFKAPNMHPPYHR
SQCDLNDLIHVANAMNTESTEDHQLTTEGES
Run BLAST on NCBI

transcript from alignment at scaffold_361:1688844..1694473-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062079 ID=TCONS_00062079|Name=TCONS_00062079|organism=Clytia hemisphaerica|type=transcript|length=5630bp|location=Sequence derived from alignment at scaffold_361:1688844..1694473- (Clytia hemisphaerica)
TCAATAGTGAAATAAAAAGAAATATAAGAAAGAAAAATGGCAGAAGAACC
AAAAGAAATTCCATCTTCAACATCTAATGAACAAGCAACGACAGAAACAA
CAGTTCCACCACTCAAAGGGGTTGAAGTCGAGATAAATAAAAAGGTACAC
GAAGAACAAAATGAAAAGGCGAACGAGGAACAAAGTGAAAAGGCAAACGA
GGAAAAAAGTGAAAAGGCGAACGAGGAACAAAAAAAAGAGCAAGTGACCG
AAGGTAATTATCTAATCTATGCGTATCCTTTAAATATTTCGACTACGTTT
TTTTTAAAGGCCTTAAACATTGCTATGGAAGACTCAGTGAGCTATCCAAT
ACTGACGACCTATACCATGTTCACATGCTGTGGTTCCGTTTAGCTCCGAA
ACGAAATGAAGCCATTCATTATATTGGTTTTAAATAGAATTTCTTCGTCC
CTTCTAATAAATAGAATGGCTTCTTTTCGTTTCGGAGCGGAACAGAACCG
TTATGTGCGGACATGGTCTTGGCAAAATTATTAAACTCAGCTGATCTTTC
TACTTATTACATCACTTGCACCAATCGCTTAGCTTCTACACACCTTCCTA
CAGGAGGGGGTGTTTAAAGTTTGAATTTACTAAGGGGAGGTTGCCAGTAA
GGGGGTCTTCCTACCTAAGGGGGCCTTGACCCCTCTAGAAACTATGCAAT
CAGCTGTTTGGGAAATTATGTATGTCATAAGAAATTGCAGTGGTGCACAT
CATAAACTGACATAAATAGTACATTTTGGAAAGTTGTAAATTAGCATTAC
TTCATTTTTCTTGTCGCATTTATCATGAATTTTTAACCCAACCTCGAGCA
AGCTACTTTATAACTGAACTAAATCTCACCCAAAACAAACAAAAAACAAA
CAAACAAACTAAAAAATACGCAGGTCCAAACGGGAAATATTTACAGTGCT
GAGCGAAACAAGGGGTCTTACTAATCACCCAGTAGATTTTCTTGCAATTT
CTAAGAATTGGTGCTGATGCAGAATCGGTCTATTAACATAATCTTTAGTC
TAGCAGGCTAGACAACTAATTCAGACATAGTAGAAATAAAGCAAAAAGTT
ATGGAGGGAACAAATTTTAGTTTATAACAAACTAAATCCCGTAACAATAA
TCGTATTATCATATAACGCTTATACTACTGTATTACACGCATTATAAACG
ACTCCAGTCTACATAATCTTGCAATTTTCAATCCTGATTACAGAGGAAAA
GATGGAGGTTGAAGAGAGTGGGGAACAGGAGAAGGCACAACTTCTTGAAG
AGGAAGAATTGTTGATGGAGGAATCAGGAGAGACCACCGACACTTCATCT
GAAAAAGCCAATGAGAGTAGAGATTACTTTGACGAGGACGAAATGTTCCA
ATGTCTGGAGTGCAAAACTAAAGAATGTGCTATGTGGAGAAAATCGAAAG
ATAAACAAGGTAAGCTATTTTCATGTTATTTTTCTGGGAAAGCATATTAT
ATTATTGAACGAACGCACATAAATAGGTAGGGAGGTGAATCTCTTTGACG
GTTAGTATCTATACTGTTCATATCGGATAAAAAAGCAGAATCTCTGACTG
TTAGTATCACGGTCTCCTCCATTGAATTTGAAGCCCTGAAATGGCTAGAG
AGTGATCTTCATACTTTCTCGAGCAAGAGAAATGGATGGTAAATAAGTGG
CTTTATTTCCCATCCAGGAGCTTTGGATCAATGGTCTCATTACAATTTTT
TCTTAATGGCTGAAGGTTTCAATACTGATTCGAGTGATATTGAAAGCTGT
TATGTGTCGAGAGGTATCAGTTGATTTGCTTACATTTACCTGTAAGATAA
AGCTTGTCCATCCCCATCATCTTTTCCAGGTGTGATTTGTAATCTTTGTC
ACTTGGAGCGTATCAAGGGCGACTCGGCCACTAACGCCCCTGGCCAGGGT
GGAACAAATAGCAATAACAATGCAGCATCTTCTTCAACCAGCAAAACGTC
ATCTTCTCTAATGCAACCACCCATGAAAGCCAAAGATGTTCGAATCTCCA
AAAGAAAAAATAAACAAAATAAGGTGTTTGACTTGTTCTTTCTTAGCTCT
TACCTCCTGTGTAATGATTAAAATTCATTTTGCAATTTCCCTTACAGATT
TACCTTTTGTTTTATTTCATCCGACTGCTTTGAATTGATAGGTATGAAAA
ATCAAGGTCTAGTCATTCAATTTTTGGAAGTGAGAATAGACATTTTCATA
AATTACGTCACGAGCAACGCTTACCTCGTTTTCAAGATATTGCTATGGTT
ATAGATTCCCAGAGGAGTTCATAAGAAGTTTACTCTATTTATAAAAGTAC
TACTTGAAGAAGAAGGGATTTAATTACCTTGGTAATGGTTTCAAAACGAG
ACAGTCGTTGCTCTCAAAATAATTTATGAAAAGGCCTATTACACTGATTT
CTTTCCCTTAGAAATTTACAAACGGTTTTTACGGCGATCGTATTATAAAG
AGTGGCCACTCTAAAAGTCGTCGTTCATTGTACAAAAGAAAGCCCATGAA
ATCCGTGCTCGGTTCGTCCACTATCGTGGCTTCACAGTCTATTTATCATG
ACGTAAGTGTTGCAGATTGCTTTTGTTTTTACGGAAGTGCGTATAATCAT
TATCATGTCTAAGACACGTTGATACATATTTTCTGATGAAGTAACTGCAT
TGAATAGAGTCCATATTTAAAATGTGGATAGCCCAGTAATCTAGGACTTT
TAGGCAGTCTTTCGATTGCTTTCACGGGGTCCACGGCCAGCCGGCTCGGC
TATATTTGAACTGAACGGAACGTTGAAAGAAGCGGGGATTCTAACCTGAT
AAGAACCTGAATTGAATCTGATTTTATAATCTGATCTTTTTCAGGGTCTG
TTATACCGAGTAGGGGATATTGTTTGCACGTCANCAACCTGATACGAACC
TGAATTGAATCTGATTTTATAATCTGATCTTTTTCAGGGTCTGTTATACC
GAGTAGGGGATATTGTTTGCACGTCAGACATCGAAGGGGGGACTTACTAT
GCACAATTAAGAGGTTTCTTACAAGACGAATACTGCGAAAAATCTGCAGT
CATCACTTGGTTAATTCCCACCAAACGAAATGTCACCAAATTCGACCCGA
TGCTTTTCGTGCCAGGTATGTAAATTCTTTATCTCTCCACTACAGTCTAA
ACGTTTAGTTTTTCAATACGTTTTTTAAGCAAACTGGTTTCCTTTCCTTG
GTCTTTGTTCGTTTTCACGACAAATTGTGGTTATTTTAGTCTTCCCTGTT
TTAAACTTCTAAATCACTTGAAGTTGGGATTTTCTTAGACAGGCTGAGCT
TTTCTTAGTTTGTTGTTTTATTTTAATGATTTTTAACCTCGTTTCTCCCA
TAAAATTCAGGAAGAGGTCGGGACCTGTTGTGCTCTTCTAACAACTAATT
TTTAAAGGTTTGATTGCGCCCAATAAGTTGAATCATTTATTTGACCTACA
AAAGTTGAGTTGATATTTCAATGAATAAATTCCTTACTTTCTTTAAAATA
GAAATGACATTGATTCGACATTTTGGATGTGAAACCCTCTCACGGTTCTT
TCATAAAAAGTGACACTTTTCTCTTGGAACATTTCAAAGTTTTCTTTCGA
AAGATCTTAACGGACATATTGACATTAAAGAGTCCCAAGAAAGATACTTT
CAAACTTCTCTTTTTAAAGGATTATGTTCGATATTTCTAAATTTTCAAGT
AAATGAAATCAAAAGATTTTCTCGGACATGATGACTATTTTTAGCCCCTT
GCTTCTGTAATTTTCATGATGTAGAATTTGTTCAAAATGCTTTGCCTACT
TGGCAATCATTTTAAGTTCCTTCTTTCGTTGGACAAAGTATTATTTATTT
CAGAGACGTGATGTAAAACTTACGAAAGTACGACCTCTCAAACCATCATA
ATCTTAAAGTTTGAAAAGAAATTGTCGCACCCACTATAATCGAATTAGCC
GATCTTTTTCGAGAGGGCATGAATAAAATCTTTCAAGTCACACATATAGG
AAGAGAGACAAAAAATAAGTTCAAAGGTGACATTAAATGATTAACTCTTT
TTGATGTTTCAAAATCTCATCTTTTCTTCGTAACAAAACTAGATTGTTTA
TCATGCGATACTTTCACCGCCTTTTATCTTTTCGTGACCTTGCTTCATCA
CACCCTTTTTAAAGGAGGTTTCCCCAAACTTCTTTGAAAAACACCAAGTT
TCACCTGTACAAAAGAATTTCTTCCTCCATCTGATGTTTATGACGTGTCG
ACAACCGAGCGTCTGTTTTTTAGATTTCTAGAATATTGTGCTTCAATACC
TCATCGGCCCTCGATACTGCATCTCCAGTGTCGAGTGCAATCATTTTGCA
AGCAAACTTCGTAGAATTACTAGCTTCAGCTCAGAGGAATTTCTATTTAC
TTCAAATTATATTGCTGGCCTTTGCTTGTGCCCCCCTTCTCAATGAGTCT
CAAAAACCTTTAAAGTTATTCTTTTCTATGATATGGAAAGGAGGCGCGCT
CATTATGCTGACAAAGCATAAGTAACAAAAGAATTTCTCAAAATTTAAAA
ATGCTATGTAAGAGATACATCAAACAATGTTCTTTAAAGGTAAAATGCAT
TTTATTTGATCGGTCCTTCTTTTCTCTCTTAATTTTAGGGTTAGACGAAG
AGACACCACGCCCAATGTCGTGTTTTAGTTTCGTTTGTCGCGCATCCACC
AACCTTTTTAAAGCTCCGAACATGCATCCACCTTATCACCGCTCACAATG
TGACCTCAACGACCTCATACATGTCGCCAACGCCATGAATACTGAATCAA
CTGAAGATCACCAGCTGACAACAGAAGGGGAAAGCTGAAAGAAGACACCA
TTTACTTGGAGAACTTGGATTTTGATATACGTCGATGTTCATTTGGTGAA
CAAGATTGGAAAATCACTAACGAGACCAATGGAGATAAAAACGGATTTTG
ATGTATTTCAATGTTCATTTTTAGCTTTTGGTGAACAAGATTGGTGTGTA
TTCTATTGGAGAGTCAAAAATGAGTCAAATGGAATTAATGATCAACCCAG
TGTGGATTCACCTATACTCGCTGGTATTTAGTATTGGATACCGTGGTCTT
TAGATTGCCAATATTTCACAGCGCTTACGTGTGTTGTGATTGAATGTTGT
TACACAAAGTAAACTGAATTCCTGAAAATTTGGCGTTTTCGTTCAAAGGG
AGATCTTGGTAATATTAGCTCTAGTTTAGACGGCACAATTTCCATCCTCC
CTATTCTAATTGTAAATTAAAGCGGGCAAAAAGTTGTCTGTCTTAAGTCA
ATGCATTGCCCTCTTCTGACGTCAATACAATGTCTTCTTTCAATCTTTTC
CAAGCAAAGATTTTTAGCTGCCAACTTTGCGCCCACTTTTCGTCTACTCT
AACAATTAGAATAGGCAGAGCAGAAAGTCGACCGTCTAAACTACCTTAAA
GGAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCTGAAAAAGTTTT
TTCAGAGGGAATTTAATTTGGCGGATAGCTGGATAAAGTAAATTTGACGG
GAATTTAATTTGGCGGTTGCAGGATATTTT

Coding sequence (CDS) from alignment at scaffold_361:1688844..1694473-

>TCONS_00062079 ID=TCONS_00062079|Name=TCONS_00062079|organism=Clytia hemisphaerica|type=CDS|length=6876bp|location=Sequence derived from alignment at scaffold_361:1688844..1694473- (Clytia hemisphaerica)
GGTTAGACGAAGAGACACCACGCCCAATGTCGTGTTTTAGTTTCGTTTGT
CGCGCATCCACCAACCTTTTTAAAGCTCCGAACATGCATCCACCTTATCA
CCGCTCACAATGTGACCTCAACGACCTCATACATGTCGCCAACGCCATGA
ATACTGAATCAACTGAAGATCACCAGCTGACAACAGAAGGGGAAAGCTGA
GGTCTGTTATACCGAGTAGGGGATATTGTTTGCACGTCAGACATCGAAGG
GGGGACTTACTATGCACAATTAAGAGGTTTCTTACAAGACGAATACTGCG
AAAAATCTGCAGTCATCACTTGGTTAATTCCCACCAAACGAAATGTCACC
AAATTCGACCCGATGCTTTTCGTGCCAGAAATTTACAAACGGTTTTTACG
GCGATCGTATTATAAAGAGTGGCCACTCTAAAAGTCGTCGTTCATTGTAC
AAAAGAAAGCCCATGAAATCCGTGCTCGGTTCGTCCACTATCGTGGCTTC
ACAGTCTATTTATCATGACGTGTGATTTGTAATCTTTGTCACTTGGAGCG
TATCAAGGGCGACTCGGCCACTAACGCCCCTGGCCAGGGTGGAACAAATA
GCAATAACAATGCAGCATCTTCTTCAACCAGCAAAACGTCATCTTCTCTA
ATGCAACCACCCATGAAAGCCAAAGATGTTCGAATCTCCAAAAGAAAAAA
TAAACAAAATAAGAGGAAAAGATGGAGGTTGAAGAGAGTGGGGAACAGGA
GAAGGCACAACTTCTTGAAGAGGAAGAATTGTTGATGGAGGAATCAGGAG
AGACCACCGACACTTCATCTGAAAAAGCCAATGAGAGTAGAGATTACTTT
GACGAGGACGAAATGTTCCAATGTCTGGAGTGCAAAACTAAAGAATGTGC
TATGTGGAGAAAATCGAAAGATAAACAAGATGGCAGAAGAACCAAAAGAA
ATTCCATCTTCAACATCTAATGAACAAGCAACGACAGAAACAACAGTTCC
ACCACTCAAAGGGGTTGAAGTCGAGATAAATAAAAAGGTACACGAAGAAC
AAAATGAAAAGGCGAACGAGGAACAAAGTGAAAAGGCAAACGAGGAAAAA
AGTGAAAAGGCGAACGAGGAACAAAAAAAAGAGCAAGTGACCGAAGGGTT
AGACGAAGAGACACCACGCCCAATGTCGTGTTTTAGTTTCGTTTGTCGCG
CATCCACCAACCTTTTTAAAGCTCCGAACATGCATCCACCTTATCACCGC
TCACAATGTGACCTCAACGACCTCATACATGTCGCCAACGCCATGAATAC
TGAATCAACTGAAGATCACCAGCTGACAACAGAAGGGGAAAGCTGAGGTC
TGTTATACCGAGTAGGGGATATTGTTTGCACGTCAGACATCGAAGGGGGG
ACTTACTATGCACAATTAAGAGGTTTCTTACAAGACGAATACTGCGAAAA
ATCTGCAGTCATCACTTGGTTAATTCCCACCAAACGAAATGTCACCAAAT
TCGACCCGATGCTTTTCGTGCCAGAAATTTACAAACGGTTTTTACGGCGA
TCGTATTATAAAGAGTGGCCACTCTAAAAGTCGTCGTTCATTGTACAAAA
GAAAGCCCATGAAATCCGTGCTCGGTTCGTCCACTATCGTGGCTTCACAG
TCTATTTATCATGACGTGTGATTTGTAATCTTTGTCACTTGGAGCGTATC
AAGGGCGACTCGGCCACTAACGCCCCTGGCCAGGGTGGAACAAATAGCAA
TAACAATGCAGCATCTTCTTCAACCAGCAAAACGTCATCTTCTCTAATGC
AACCACCCATGAAAGCCAAAGATGTTCGAATCTCCAAAAGAAAAAATAAA
CAAAATAAGAGGAAAAGATGGAGGTTGAAGAGAGTGGGGAACAGGAGAAG
GCACAACTTCTTGAAGAGGAAGAATTGTTGATGGAGGAATCAGGAGAGAC
CACCGACACTTCATCTGAAAAAGCCAATGAGAGTAGAGATTACTTTGACG
AGGACGAAATGTTCCAATGTCTGGAGTGCAAAACTAAAGAATGTGCTATG
TGGAGAAAATCGAAAGATAAACAAGATGGCAGAAGAACCAAAAGAAATTC
CATCTTCAACATCTAATGAACAAGCAACGACAGAAACAACAGTTCCACCA
CTCAAAGGGGTTGAAGTCGAGATAAATAAAAAGGTACACGAAGAACAAAA
TGAAAAGGCGAACGAGGAACAAAGTGAAAAGGCAAACGAGGAAAAAAGTG
AAAAGGCGAACGAGGAACAAAAAAAAGAGCAAGTGACCGAAGGGTTAGAC
GAAGAGACACCACGCCCAATGTCGTGTTTTAGTTTCGTTTGTCGCGCATC
CACCAACCTTTTTAAAGCTCCGAACATGCATCCACCTTATCACCGCTCAC
AATGTGACCTCAACGACCTCATACATGTCGCCAACGCCATGAATACTGAA
TCAACTGAAGATCACCAGCTGACAACAGAAGGGGAAAGCTGAGGTCTGTT
ATACCGAGTAGGGGATATTGTTTGCACGTCAGACATCGAAGGGGGGACTT
ACTATGCACAATTAAGAGGTTTCTTACAAGACGAATACTGCGAAAAATCT
GCAGTCATCACTTGGTTAATTCCCACCAAACGAAATGTCACCAAATTCGA
CCCGATGCTTTTCGTGCCAGAAATTTACAAACGGTTTTTACGGCGATCGT
ATTATAAAGAGTGGCCACTCTAAAAGTCGTCGTTCATTGTACAAAAGAAA
GCCCATGAAATCCGTGCTCGGTTCGTCCACTATCGTGGCTTCACAGTCTA
TTTATCATGACGTGTGATTTGTAATCTTTGTCACTTGGAGCGTATCAAGG
GCGACTCGGCCACTAACGCCCCTGGCCAGGGTGGAACAAATAGCAATAAC
AATGCAGCATCTTCTTCAACCAGCAAAACGTCATCTTCTCTAATGCAACC
ACCCATGAAAGCCAAAGATGTTCGAATCTCCAAAAGAAAAAATAAACAAA
ATAAGAGGAAAAGATGGAGGTTGAAGAGAGTGGGGAACAGGAGAAGGCAC
AACTTCTTGAAGAGGAAGAATTGTTGATGGAGGAATCAGGAGAGACCACC
GACACTTCATCTGAAAAAGCCAATGAGAGTAGAGATTACTTTGACGAGGA
CGAAATGTTCCAATGTCTGGAGTGCAAAACTAAAGAATGTGCTATGTGGA
GAAAATCGAAAGATAAACAAGATGGCAGAAGAACCAAAAGAAATTCCATC
TTCAACATCTAATGAACAAGCAACGACAGAAACAACAGTTCCACCACTCA
AAGGGGTTGAAGTCGAGATAAATAAAAAGGTACACGAAGAACAAAATGAA
AAGGCGAACGAGGAACAAAGTGAAAAGGCAAACGAGGAAAAAAGTGAAAA
GGCGAACGAGGAACAAAAAAAAGAGCAAGTGACCGAAGGGTTAGACGAAG
AGACACCACGCCCAATGTCGTGTTTTAGTTTCGTTTGTCGCGCATCCACC
AACCTTTTTAAAGCTCCGAACATGCATCCACCTTATCACCGCTCACAATG
TGACCTCAACGACCTCATACATGTCGCCAACGCCATGAATACTGAATCAA
CTGAAGATCACCAGCTGACAACAGAAGGGGAAAGCTGAGGTCTGTTATAC
CGAGTAGGGGATATTGTTTGCACGTCAGACATCGAAGGGGGGACTTACTA
TGCACAATTAAGAGGTTTCTTACAAGACGAATACTGCGAAAAATCTGCAG
TCATCACTTGGTTAATTCCCACCAAACGAAATGTCACCAAATTCGACCCG
ATGCTTTTCGTGCCAGAAATTTACAAACGGTTTTTACGGCGATCGTATTA
TAAAGAGTGGCCACTCTAAAAGTCGTCGTTCATTGTACAAAAGAAAGCCC
ATGAAATCCGTGCTCGGTTCGTCCACTATCGTGGCTTCACAGTCTATTTA
TCATGACGTGTGATTTGTAATCTTTGTCACTTGGAGCGTATCAAGGGCGA
CTCGGCCACTAACGCCCCTGGCCAGGGTGGAACAAATAGCAATAACAATG
CAGCATCTTCTTCAACCAGCAAAACGTCATCTTCTCTAATGCAACCACCC
ATGAAAGCCAAAGATGTTCGAATCTCCAAAAGAAAAAATAAACAAAATAA
GAGGAAAAGATGGAGGTTGAAGAGAGTGGGGAACAGGAGAAGGCACAACT
TCTTGAAGAGGAAGAATTGTTGATGGAGGAATCAGGAGAGACCACCGACA
CTTCATCTGAAAAAGCCAATGAGAGTAGAGATTACTTTGACGAGGACGAA
ATGTTCCAATGTCTGGAGTGCAAAACTAAAGAATGTGCTATGTGGAGAAA
ATCGAAAGATAAACAAGATGGCAGAAGAACCAAAAGAAATTCCATCTTCA
ACATCTAATGAACAAGCAACGACAGAAACAACAGTTCCACCACTCAAAGG
GGTTGAAGTCGAGATAAATAAAAAGGTACACGAAGAACAAAATGAAAAGG
CGAACGAGGAACAAAGTGAAAAGGCAAACGAGGAAAAAAGTGAAAAGGCG
AACGAGGAACAAAAAAAAGAGCAAGTGACCGAAGGGTTAGACGAAGAGAC
ACCACGCCCAATGTCGTGTTTTAGTTTCGTTTGTCGCGCATCCACCAACC
TTTTTAAAGCTCCGAACATGCATCCACCTTATCACCGCTCACAATGTGAC
CTCAACGACCTCATACATGTCGCCAACGCCATGAATACTGAATCAACTGA
AGATCACCAGCTGACAACAGAAGGGGAAAGCTGAGGTCTGTTATACCGAG
TAGGGGATATTGTTTGCACGTCAGACATCGAAGGGGGGACTTACTATGCA
CAATTAAGAGGTTTCTTACAAGACGAATACTGCGAAAAATCTGCAGTCAT
CACTTGGTTAATTCCCACCAAACGAAATGTCACCAAATTCGACCCGATGC
TTTTCGTGCCAGAAATTTACAAACGGTTTTTACGGCGATCGTATTATAAA
GAGTGGCCACTCTAAAAGTCGTCGTTCATTGTACAAAAGAAAGCCCATGA
AATCCGTGCTCGGTTCGTCCACTATCGTGGCTTCACAGTCTATTTATCAT
GACGTGTGATTTGTAATCTTTGTCACTTGGAGCGTATCAAGGGCGACTCG
GCCACTAACGCCCCTGGCCAGGGTGGAACAAATAGCAATAACAATGCAGC
ATCTTCTTCAACCAGCAAAACGTCATCTTCTCTAATGCAACCACCCATGA
AAGCCAAAGATGTTCGAATCTCCAAAAGAAAAAATAAACAAAATAAGAGG
AAAAGATGGAGGTTGAAGAGAGTGGGGAACAGGAGAAGGCACAACTTCTT
GAAGAGGAAGAATTGTTGATGGAGGAATCAGGAGAGACCACCGACACTTC
ATCTGAAAAAGCCAATGAGAGTAGAGATTACTTTGACGAGGACGAAATGT
TCCAATGTCTGGAGTGCAAAACTAAAGAATGTGCTATGTGGAGAAAATCG
AAAGATAAACAAGATGGCAGAAGAACCAAAAGAAATTCCATCTTCAACAT
CTAATGAACAAGCAACGACAGAAACAACAGTTCCACCACTCAAAGGGGTT
GAAGTCGAGATAAATAAAAAGGTACACGAAGAACAAAATGAAAAGGCGAA
CGAGGAACAAAGTGAAAAGGCAAACGAGGAAAAAAGTGAAAAGGCGAACG
AGGAACAAAAAAAAGAGCAAGTGACCGAAGGGTTAGACGAAGAGACACCA
CGCCCAATGTCGTGTTTTAGTTTCGTTTGTCGCGCATCCACCAACCTTTT
TAAAGCTCCGAACATGCATCCACCTTATCACCGCTCACAATGTGACCTCA
ACGACCTCATACATGTCGCCAACGCCATGAATACTGAATCAACTGAAGAT
CACCAGCTGACAACAGAAGGGGAAAGCTGAGGTCTGTTATACCGAGTAGG
GGATATTGTTTGCACGTCAGACATCGAAGGGGGGACTTACTATGCACAAT
TAAGAGGTTTCTTACAAGACGAATACTGCGAAAAATCTGCAGTCATCACT
TGGTTAATTCCCACCAAACGAAATGTCACCAAATTCGACCCGATGCTTTT
CGTGCCAGAAATTTACAAACGGTTTTTACGGCGATCGTATTATAAAGAGT
GGCCACTCTAAAAGTCGTCGTTCATTGTACAAAAGAAAGCCCATGAAATC
CGTGCTCGGTTCGTCCACTATCGTGGCTTCACAGTCTATTTATCATGACG
TGTGATTTGTAATCTTTGTCACTTGGAGCGTATCAAGGGCGACTCGGCCA
CTAACGCCCCTGGCCAGGGTGGAACAAATAGCAATAACAATGCAGCATCT
TCTTCAACCAGCAAAACGTCATCTTCTCTAATGCAACCACCCATGAAAGC
CAAAGATGTTCGAATCTCCAAAAGAAAAAATAAACAAAATAAGAGGAAAA
GATGGAGGTTGAAGAGAGTGGGGAACAGGAGAAGGCACAACTTCTTGAAG
AGGAAGAATTGTTGATGGAGGAATCAGGAGAGACCACCGACACTTCATCT
GAAAAAGCCAATGAGAGTAGAGATTACTTTGACGAGGACGAAATGTTCCA
ATGTCTGGAGTGCAAAACTAAAGAATGTGCTATGTGGAGAAAATCGAAAG
ATAAACAAGATGGCAGAAGAACCAAAAGAAATTCCATCTTCAACATCTAA
TGAACAAGCAACGACAGAAACAACAGTTCCACCACTCAAAGGGGTTGAAG
TCGAGATAAATAAAAAGGTACACGAAGAACAAAATGAAAAGGCGAACGAG
GAACAAAGTGAAAAGGCAAACGAGGAAAAAAGTGAAAAGGCGAACGAGGA
ACAAAAAAAAGAGCAAGTGACCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038903XLOC_038903Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062079-proteinTCONS_00062079-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062079-exon-scaffold_361-1575043694:1694221..1694473TCONS_00062079-exon-scaffold_361-1575043694:1694221..1694473Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1575043694:1693015..1693230TCONS_00062079-exon-scaffold_361-1575043694:1693015..1693230Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1575043694:1692401..1692594TCONS_00062079-exon-scaffold_361-1575043694:1692401..1692594Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1575043694:1691872..1692012TCONS_00062079-exon-scaffold_361-1575043694:1691872..1692012Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1575043694:1691309..1691486TCONS_00062079-exon-scaffold_361-1575043694:1691309..1691486Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1575043694:1688844..1689785TCONS_00062079-exon-scaffold_361-1575043694:1688844..1689785Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1510915933:1694221..1694473TCONS_00062079-exon-scaffold_361-1510915933:1694221..1694473Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1510915933:1693015..1693230TCONS_00062079-exon-scaffold_361-1510915933:1693015..1693230Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1510915933:1692401..1692594TCONS_00062079-exon-scaffold_361-1510915933:1692401..1692594Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1510915933:1691872..1692012TCONS_00062079-exon-scaffold_361-1510915933:1691872..1692012Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1510915933:1691309..1691486TCONS_00062079-exon-scaffold_361-1510915933:1691309..1691486Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1510915933:1688844..1689785TCONS_00062079-exon-scaffold_361-1510915933:1688844..1689785Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1491911889:1694221..1694473TCONS_00062079-exon-scaffold_361-1491911889:1694221..1694473Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1491911889:1693015..1693230TCONS_00062079-exon-scaffold_361-1491911889:1693015..1693230Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1491911889:1692401..1692594TCONS_00062079-exon-scaffold_361-1491911889:1692401..1692594Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1491911889:1691872..1692012TCONS_00062079-exon-scaffold_361-1491911889:1691872..1692012Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1491911889:1691309..1691486TCONS_00062079-exon-scaffold_361-1491911889:1691309..1691486Clytia hemisphaericaexon
TCONS_00062079-exon-scaffold_361-1491911889:1688844..1689785TCONS_00062079-exon-scaffold_361-1491911889:1688844..1689785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1688844..1694473 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.9151	31.2691	9.2811	5.71541	19.9343	15.7255	15.0154	14.8444	8.83741	11.6676	10.909	8.19029	8.58896	7.90699	10.1925	11.1581	13.5697	14.0076	6.29185	6.0299	9.81895	9.38782	33.6272	29.4692	14.1706	16.6308	7.92411	6.47857	20.1578	21.9497
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013088Znf_NHR/GATA
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00062079 vs. Swiss-Prot (Human)
Match: GATD1 (GATA zinc finger domain-containing protein 1 OS=Homo sapiens GN=GATAD1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.616e-27
Identity = 76/227 (33.48%), Postives = 120/227 (52.86%), Query Frame = 1 
Query:  412 CLECKTKECAMWRKSKDKQGVICNLCHLERIKGDSATNAPGQGGXXXXXXXXXXXXXXXXXXLMQPPM-------KAKDVRISKRKNK-QNKKFTNGFYGDRIIKSGHSKSRRSLYKRK-PMKSVLGSSTIVASQSIYHDGLLYRVGDIVCTSDIEGG-TYYAQLRGFLQDEYCEKSAVITWLIPTKRNV-TKFDPMLFVPGLDEETPRPMSCFSFVCRASTNLFKA 1059
            C  CKT   +MW+K    + ++C+ C   R    S     G  G    +       +  +S+   PP        K     I +R  + +N K+ +    ++ + S   K RR ++K K P+K+    STI+ ++SI++ G+ Y++GD+V   D + G  YYAQ+RGF+QD+YCEKSA +TWLIPT  +   +FDP  ++ G +E+ PR M    FVC A +  FK+
Sbjct:    9 CSVCKTTSSSMWKKGAQGE-ILCHHC-TGRGGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKV-STKGKGRRHIFKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEKSAALTWLIPTLSSPRDQFDPASYIIGPEEDLPRKMEYLEFVCHAPSEYFKS 232
The following BLAST results are available for this feature:
BLAST of TCONS_00062079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GATD11.616e-2733.48GATA zinc finger domain-containing protein 1 OS=Ho... [more]
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