TCONS_00062079-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062079-protein
Unique Name	TCONS_00062079-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	381

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062079-protein ID=TCONS_00062079-protein|Name=TCONS_00062079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MAEEPKEIPSSTSNEQATTETTVPPLKGVEVEINKKVHEEQNEKANEEQS
EKANEEKSEKANEEQKKEQVTEEEKMEVEESGEQEKAQLLEEEELLMEES
GETTDTSSEKANESRDYFDEDEMFQCLECKTKECAMWRKSKDKQGVICNL
CHLERIKGDSATNAPGQGGTNSNNNAASSSTSKTSSSLMQPPMKAKDVRI
SKRKNKQNKKFTNGFYGDRIIKSGHSKSRRSLYKRKPMKSVLGSSTIVAS
QSIYHDGLLYRVGDIVCTSDIEGGTYYAQLRGFLQDEYCEKSAVITWLIP
TKRNVTKFDPMLFVPGLDEETPRPMSCFSFVCRASTNLFKAPNMHPPYHR
SQCDLNDLIHVANAMNTESTEDHQLTTEGES

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038903	XLOC_038903	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062079	TCONS_00062079	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013088	Znf_NHR/GATA

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..116
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 121..157
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 119..210 e-value: 1.0E-5 score: 24.7

Blast

[Close]

BLAST of TCONS_00062079-protein vs. Swiss-Prot (Human)
Match: GATD1 (GATA zinc finger domain-containing protein 1 OS=Homo sapiens GN=GATAD1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.390e-30
Identity = 78/228 (34.21%), Postives = 121/228 (53.07%), Query Frame = 0

Query:  126 CLECKTKECAMWRKSKDKQG-VICNLCHLERIKGDSATNAPGQGGTNSNNNAASSSTSKTSSSLMQPP-------MKAKDVRISKRKNK-QNKKFTNGFYGDRIIKSGHSKSRRSLYKRK-PMKSVLGSSTIVASQSIYHDGLLYRVGDIVCTSD-IEGGTYYAQLRGFLQDEYCEKSAVITWLIPTKRNVT-KFDPMLFVPGLDEETPRPMSCFSFVCRASTNLFKA 341
            C  CKT   +MW+K    QG ++C+ C   R    S     G  G    +       +  +S+   PP        K     I +R  + +N K+ +    ++ + S   K RR ++K K P+K+    STI+ ++SI++ G+ Y++GD+V   D  +G  YYAQ+RGF+QD+YCEKSA +TWLIPT  +   +FDP  ++ G +E+ PR M    FVC A +  FK+
Sbjct:    9 CSVCKTTSSSMWKKGA--QGEILCHHC-TGRGGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKV-STKGKGRRHIFKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEKSAALTWLIPTLSSPRDQFDPASYIIGPEEDLPRKMEYLEFVCHAPSEYFKS 232

The following BLAST results are available for this feature:

BLAST of TCONS_00062079-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062079-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GATD1	1.390e-30	34.21	GATA zinc finger domain-containing protein 1 OS=Ho...	[more]

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TCONS_00062079-protein (polypeptide) - C. hemisphaerica