Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062067 ID=TCONS_00062067|Name=TCONS_00062067|organism=Clytia hemisphaerica|type=transcript|length=1781bpRun BLAST on NCBI protein sequence of TCONS_00062067-protein >TCONS_00062067-protein ID=TCONS_00062067-protein|Name=TCONS_00062067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp LITNLAMVSMGVELTERPDLLIFLVDDLGYGDVGFNKEGDSDGSGESPTPRun BLAST on NCBI transcript from alignment at scaffold_361:1565496..1571106- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062067 ID=TCONS_00062067|Name=TCONS_00062067|organism=Clytia hemisphaerica|type=transcript|length=5611bp|location=Sequence derived from alignment at scaffold_361:1565496..1571106- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1565496..1571106- >TCONS_00062067 ID=TCONS_00062067|Name=TCONS_00062067|organism=Clytia hemisphaerica|type=CDS|length=13770bp|location=Sequence derived from alignment at scaffold_361:1565496..1571106- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062067 vs. Swiss-Prot (Human)
Match: ARSG (Arylsulfatase G OS=Homo sapiens GN=ARSG PE=1 SV=1) HSP 1 Score: 367.081 bits (941), Expect = 4.265e-119 Identity = 204/503 (40.56%), Postives = 286/503 (56.86%), Query Frame = 1 Query: 46 ERPDLLIFLVDDLGYGDVGFNKEGDSDGSGESPTPNMDAFSKKGIRFTDYHSPYAVCTPSRASLLTSRLGARTGLYSLLNAKSIGGLPTTEYTLSEHLKKIDYSTFAIGKWHLGHQDNYHPNDRGFDHYLGVPYSLDMGCLDYPGYSHPKHLSC----------KRDITDEVAIPLYRDKTIIQQPLDLRTLSDIYFQEFQQRMEEIHQKKTNFFGYIPFSKVHVPLGFAE--HSPNG-TAFSDNLKELDMNFGRMIQTVKDLGLFENTVIWLISDNGPWELECQFAGQPGKFQGLWQKMKTGGGGGTSWKETIWEGGHRVPAVVTWPQYIKEGRVSDALISGLDIMPTMASLMGFELPTDRHYDGEDLSRVLKDGSDEGRLTLFHPRSNARD--NEITAVRWKNYKAVFKSGGLRLLDCHFGSSMARTYXXXXXXXXXXXXSEAKPLDTTDPFNKALVSHLKDLLEKLNEDIAGDFKSKFDDRQDSSVMPCCNARNRHCRCQ 1509 ++P+ +I L DD+G+GD+G N D T N+D + +G+RF D+H+ + C+PSRASLLT RLG R G+ S+GGLP E TL+E L++ Y T IGKWHLGH +YHPN RGFD+Y G+PYS DMGC D PGY+HP +C +RD +VA+PLY + I++QP++L +L+ Y ++ Q ++ F Y+ + +HVPL + +P G + + L E+D G++ V D + ENT +W DNGPW +C+ AG G F G WQ + GG+ K+T WEGGHRVPA+ WP + S AL+S LDI PT+ +L LP R +DG D+S VL S G LFHP S A + VR + YKA + +GG R D G + + PL+F+L+DD +EA PL+ +A++ ++ +L + +DIA D S D QD SV PCCN CRCQ Sbjct: 34 QKPNFVIILADDMGWGDLGANWAETKD------TANLDKMASEGMRFVDFHAAASTCSPSRASLLTGRLGLRNGVTRNFAVTSVGGLPLNETTLAEVLQQAGYVTGIIGKWHLGHHGSYHPNFRGFDYYFGIPYSHDMGCTDTPGYNHPPCPACPQGDGPSRNLQRDCYTDVALPLYENLNIVEQPVNLSSLAQKYAEKATQFIQRASTSGRPFLLYVALAHMHVPLPVTQLPAAPRGRSLYGAGLWEMDSLVGQIKDKV-DHTVKENTFLWFTGDNGPWAQKCELAGSVGPFTGFWQTRQ----GGSPAKQTTWEGGHRVPALAYWPGRVPVNVTSTALLSVLDIFPTVVALAQASLPQGRRFDGVDVSEVLFGRSQPGHRVLFHPNSGAAGEFGALQTVRLERYKAFYITGGARACDGSTGPELQHKF--PLIFNLEDDTAEAVPLERGGAEYQAVLPEVRKVLADVLQDIANDNISSADYTQDPSVTPCCNPYQIACRCQ 523 The following BLAST results are available for this feature:
BLAST of TCONS_00062067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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