TCONS_00062062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062062
Unique NameTCONS_00062062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062062 ID=TCONS_00062062|Name=TCONS_00062062|organism=Clytia hemisphaerica|type=transcript|length=2251bp
ATGCAACGGAAGGTGAGTCTCTTGGAGTTACAATCTCCACCACAGAAAAC
ACAGTGACAGCATGTGCATCAATGACTCGTTTCAAGCCCACCAACCAGGC
TTGTGTTGACGATCCTGAATCAAAATCATGCTTGTTCCGTAGAAATTACT
TCATGGGACGATGTCCGGTCTTTGATGAAGATCTAAAGTTCAAATACAGC
GATATTCCATGTTATAAAGGTAGCCTGAACCGTACACCACATCTCAACCG
TTACGGTATGTGCATGTTAGGTACAGGAGGCGTCCAATCATTCAATAATG
AGGGGAAATTATATCAATTCATTTCTGCACCAGGATCCGGAAGATATATC
GGTGCTGTTGTTTCTACCGTTGATGGCgataaaaattcaaactttgtcAA
CAAAGTGAATCTCAAAGATGATACAACATTCTTAAGAAGCGCAGAGGTGA
AGAATGATGATTCCAAGAGCTTCACTGCTCAACATGCTATGGTTGGTTAC
AGCACCGCCAAAGGAAATTTCACTGGTGAAGTTTTACCAGGACTTGCCAG
TGGATCTCCAAGAGCTGCTCTCTTCGGCGGACAGGTGATGATCTACCAAT
ACCGCTTGAAGAATGGGACAGCCACACCCGATGATCTAGATGATGACTCA
GAACTAACCATCAAACAAATTATCACTAACCCAGCACCTTCCAAAGGAGG
ACCATCGTTATTCGGAGCATCTGTTGCAGCAATCGATATTAACGGGGACG
GTTTCGATGATTTGGCAGTTGGAGCACCGTTATTTGCCAATTCAGTAGGT
AACCGTATCGGTCAAGATGAAGGACGTGTCTTCATATTCATCAACAACAA
AAACGGACAATTCTCGTTCAAACAAAACATGACATTGGAAGGTGAGAATG
TGGAGTCATCACGTTTTGGTTCCACTGTTGTCAACATTGGTGACATCAAT
GGCGATGGAAGTGATGatttGGCAGTAGGAGCTCCTTGGGGAGGAAAAGA
TGGAAATGGAGCCGTCTACATCTACAACGTACGAGATGGACAACTCACTA
AAACACATTCCCAGGTCCTTTCCTCACCATCTGGTGCCGGATTCGGTTAT
TCGATTTCATCAGCCAAAATCGACACTAGAGTTTATCCAGCTTTGGCGGT
TGGAGCACCCGAATCCGGTCGCGTCTTCTTATTCAAAGCTAAGACCATCA
TCACATTGGAAGATAATTTATGGATTGATCGGATTACCATCCCAACTGAT
GAATCAAATTGTGAATTCGGAAAAGTCAAATATCAATGCATCACATTCAG
AGCTAATTTAAAGGACGCAAGTACCAATGCACCAGCTAAATTTGATTTGG
AGATAACATTCGAAGCGGATGTCCGAGATTCTGCAGCAGCCGGACGAGCT
TTGATTTACGACAACTCTACGAAAACACTGGTCAAATCTGTCACCAACAA
GGTCACATTCATCCGAGGTAGATCGTTGCCATACCAACACACCATCTATA
TCAGTATTGATAAAGCAACAAATTTTGAATCGCCAGTCCGTCTAACAACC
TCCTACCGAACATTCGCATCAAAGAATAATTGTGAAGACGGCCCATGCGC
CATTTTGGATCAGTTTGGTGCATTGAGCGGGTTTGCCGTggtgaaatatt
tgaaacaatgCGGTACCGATCAAGTCTGCGATGTTGACCTAGACATTGAG
GATACTGAAATTCGTGTGAAAAAAGGTGCATCTTCGGTAATCGAACCATT
GTACATCGGGTCATTTAACGATGAAATCAAACTGATTGCAAAAGTACGCA
ACAGAAATGAGTCGGCATACCAAGCCAAAATGGAAATCAATTTTCACGAA
GATTTTGCTCTCCTTCAAATTTCAGTCAACGGGAGAGACAGCATCATTCC
TGAATACAACGGAGAGAATAAAAATGGAACTGGAAATGTGGTCAAATTCT
TATTGGACAATCCCATCTTGGAAAGAGAAGTGGTTGATGTCGAAGCTCAa
ttcatcatcaaaagtttaGCGAGACCGAAATTTTTCGAATATCCATTCAA
CTTGACCGTTAACTCTACTGGTAACGACATTAACCAATCAAACAACAGAA
AAACCATCAAATTACCCATGAAGATCCAATCGTGTGTACAAATCTCTCTT
GATCGTGCTGAAGGGGGTGACGCACGAAACGAAGCACCTAAACTGTTGTA
CGACAATCTCAAGAAACCGATTGCACGACCACAGAGTGCTCAAGAAGCAG
G
Run BLAST on NCBI

transcript from alignment at scaffold_361:1532541..1541433-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062062 ID=TCONS_00062062|Name=TCONS_00062062|organism=Clytia hemisphaerica|type=transcript|length=8893bp|location=Sequence derived from alignment at scaffold_361:1532541..1541433- (Clytia hemisphaerica)
ATGCAACGGAAGGTGAGTCTCTTGGAGTTACAATCTCCACCACAGAAAAC
ACAGTGACAGCATGTGCATCAATGACTCGTTTCAAGCCCACCAACCAGGC
TTGTGTTGACGATCCTGAATCAAAATCATGCTTGTTCCGTAGAAATTACT
TCATGGGACGATGTCCGGTCTTTGATGAAGATCTAAAGTTCAAATACAGC
GATATTCCATGTTATAAAGGTAGGGAAGATTTATTACAAGATATTATAAT
CGAAGGGCGGAATATTGTTTCCTGTTTTTATCCTTTCCCTTCATGATTCG
ATTCCGTAGTCGAGCCTTAGTCCAGAGATCGAATTCAACCGAACACTCAC
CATTGAGGAAAAAATCTACAATAAATCTGTTCGATTCAGATCGAGACGTC
GATGCTTAGAGAGAGTTCCTAACAACAACAGAAGGGGTTTTATATTGGGC
AGTTAAAAGAAACAAAATAAAAACGGAGAAATAATTGTTTTCCAGAGACC
CTCATACACCTATTCTACTTTACATTACAGGTAGCCTGAACCGTACACCA
CATCTCAACCGTTACGGTATGTGCATGTTAGGTACAGGAGGCGTCCAATC
ATTCAATAATGAGGGGAAATTATATCAATTCATTTCTGCACCAGGATCCG
GAAGATATATCGGTAAGTCTATCAGTAGTGGAGAGCATTTTAACCATTTT
AACCAACATCTCAGTGATATGTAAAGGTATAAAATTGAGTACTTCTTTCT
AACTTTGGCAAACCGAGGCTGAGGAACAGTTGGCGTGACTTAATAGCGAG
TTTGTGTATTCGAGATAAATGAGGGGTGCGGGATAAAGCAAAGTTGACAT
GTCTCCGAAATCACCATCCACTTTGCTCGACGACGGTAAAAACACCAAAA
TACCGTCGTCTGTTTAGGTGAGCAAAGGCGATATAGAGCCGTACATCAAC
TATCGACTTTTGTTTTGTATCGATTTCATCTACCGTAGCCCTCGATATCC
TCCGATATGATAAACTCGGTAATTGAACTCCTATACGCCCTTCAGAATCT
TCATTTTCAAATTATTTTCAAGACATTTGAATGGAATAAAATATTTGACA
TCTATCCTCCTCCTCTTTATTCTAAGGTGCTGTTGTTTCTACCGTTGATG
GCGATAAAAATTCAAACTTTGTCAACAAAGTGAATCTCAAAGATGATACA
ACATTCTTAAGAAGCGCAGAGGTGAAGAATGATGATTCCAAGAGCTTCAC
TGCTCAACATGCTATGGTTGGTTACAGCACCGCCAAAGGAAATTTCACTG
GTGAAGTTTTACCAGGACTTGCCAGTGGATCTCCAAGAGCTGCTCTCTTC
GGCGGACAGGTAAGAGAAACATTTGGATAAATGGTAATGGCAGAATGCTT
CATAAGCATACTGGATTAAGGAAGTTCCAGTCCATATATCACAGCGTGGC
TAAAGTAATTTATGAATACAGTCAACTCTCTCTAATTCGAAATTAAATAC
TCTCTGTAATTCGAATCTTTCGAATTTGAAACCCCTGGCTCTTTGAGAGT
CAACTGTATATGCAGGTATATGTAAATTTAACAGTCAATCACAATCGATA
TGGGATACTAAAATATACTGTAAAAATGACCAAGTCTTGTGGAATTAAAA
AACGACGACATACTCATTTTAGGTGATGATCTACCAATACCGCTTGAAGA
ATGGGACAGCCACACCCGATGATCTAGATGATGACTCAGAACTAACCATC
AAACAAATTATCACTAACCCAGCACCTTCCAAAGGAGTAAGTAGTTTGGA
GCATTCAACCCATAAGCCACTGCGTCACACATAGAACTATCTCTGAAAGA
TTTTAGCTATAGTTGACTCTCTCCAATTTGACATTCTACTATTCCATACG
TTCCATTTTTTCGATAATAGTAAAGTGACCGTCAACAAGACACTCTCATA
AACGACGTTCTTCTATCCGATACGTTTCATTATTCGTTGAAAGTCCAATC
CCCTTGAAAAAAGAATCAGAGAGAACCAACAACTTATTTGTGAGGTGTTG
AATTCGTATCACAATGAGAATTTGGACGAAGAAAAGAAGAAGCACATCCC
AAGGCCTCACATATAAATATTTTACAGTGCTTTCTCGGTTAACATTTTTA
TGGTATTTCTCATAGGGACCATCGTTATTCGGAGCATCTGTTGCAGCAAT
CGATATTAACGGGGACGGGTAAGAAAAGTAGATTTCTATTTTTCAAAGAT
AAAATGCAAAAACTTGGTTTGAAAAAAATAACCTAGGAATAGAGACAGAA
TAGAAAGTGTAGAATCATTTTGATCTCTCTAGAATGAACATCCAGTTATA
ATGTTTCCAAAGGAATCTATGATATTCATGACGTGATGTTTTATAATGAA
GCACCCAAAATAGTCCGGGCGTATGCAACTAGTATTGTTACTAAAATCCA
AAACTAGTGCCAAACACCCGGTATTTTTTTAGTGCCTCCGTTCAAAACAT
TACGTCACGAATATCACGAATTAAGTTGGTGTTCATTTTATCCCTCTTTT
TACGTTGCCAGTTTCGATGATTTGGCAGTTGGAGCACCGTTATTTGCCAA
TTCAGTAGGTAACCGTATCGGTCAAGATGAAGGACGTGTCTTCATATTCA
TCAACAACAAAAACGGACAAGTAAGTATATTACTCCCCTAGCTTTTTTTC
AGATCCCAAAATTGGATATCAGAGCTATTAAGCACAACTCGCTAATTAGG
GCGAAGCGAACTCTTGCTGATATAAACTTCTATAATTAGAGCCCTTCTAT
AATTCGAAATAATCCACAGTCCCAATCAAAGGGAAAAGCTCTCAAATTAC
TTTCTATAATTCGACTCCTTTCTTAATTTAAACAAATAAGATTCCCCGTT
CGAGTTCAAAGTAGCGAAAGTCAACGAGAACTAAAATTGCAACGATGAAT
TTTTTTTGTATCTATAGTTCTCGTTCAAACAAAACATGACATTGGAAGGT
GAGAATGTGGAGTCATCACGTTTTGGTTCCACTGTTGTCAACATTGGTGA
CATCAATGGCGATGGAAGTGATGGTAAGTTCGAAAGGCGTTACCCTTTAC
AAACCCTGGACCAAGTTTTATCCGCCATCTTTGATCGGAAGTTTTAGAAA
AATAGTAGCACTACTCGATGTCGGTCAATTCATAATTTAATGAAATCTTT
TAAGTTTAAAAACCCAAGAAATTTCATGTATTGATTACACTAGACAATCA
TCGTGTTATTAGCGTACTGCAAACTAAATACTTTTCTATGATGAAATGAC
GGCTCAGTTAGTACTAAATTGATTTGTTTTGTCTGCAGACTCTCTTTTCT
GGCTTTCAGAGTATGCGTCGTCATAACACATCCAATTATTTTTTATGTCT
TCTTACTTTTTTAGATTTGGCAGTAGGAGCTCCTTGGGGAGGAAAAGATG
GAAATGGAGCCGTCTACATCTACAACGTACGAGATGGACAACTCACTAAA
ACACATTCCCAGGTATGTAACCATGGTGATGAAGTTGATCATGTGATACT
TAAGATTCTCATCGTTAAAAAATAGGTGTAAAGTTTTTGTGAGGAATACG
AAAGTCATTGTACTCTCAATTAAACATCCGCTTTCATGACTATGAAACAT
TTTATTTCTTCGATCTTATCACTATCAAATGAAAGGAAAGTTGAAAACAA
CAAAGAAGTATTAAAGTTCTCCTCTCTACTGCTTTACAGGTCCTTTCCTC
ACCATCTGGTGCCGGATTCGGTTATTCGATTTCATCAGCCAAAATCGACA
CTAGAGTTTATCCAGGTAAGATTATACGAACGGTGCAATGAATCGATGTG
GATCGACGTTCTCGATTTTCGAGTCAATAGATTGAGACCAGGAGTGCCAC
CTGATGAATTACGATAAAGATAATTTCAACTAGTGGAACTTCGAAACTTC
CTATCCAGGAAACAGTCTATTTTATTGTTTTAAAGAAACAAAGCCTAACC
AGAGGATTAACGTGTATATTACTGACCTAACATAATCATATTTCTCTTAA
TAGCTTTGGCGGTTGGAGCACCCGAATCCGGTCGCGTCTTCTTATTCAAG
TAAGTCAAATCTTTTGAGAACTACAAGCAGAAAAGTGCAATTGAGAGTCC
ACTCAAAGTCTGATATTTATCAATCTAGACCTCAATAAGGTTTCTGAAAT
TCAGATATTACATGTCAAGAAGAGGTCCTCTATTATTTGAGTAAAGAATT
TTAAAAGCTTTTGATTTGCGGTGATTATCGAGAGAAATGTTCTTCACTTA
AGCGTCGTTAACGATTACTCAGATGCGTCAAATGGGAGTGATTGGACTTT
ATGGATAGGAAGATGATCACTGTGATCAATAGCAAATTATTGGTAAAATT
ATCGTAAAATTATCTTTTTCTCATTACAGAGCTAAGACCATCATCACATT
GGAAGATAATTTATGGATTGATCGGATTACCATCCCAACTGATGAATCAA
ATTGTGAATTCGGAAAAGTCAAATATCAATGGTAAACAACTTTTACGTGT
TATGCCCCCTTAGCCATCAGTTTCAAGGTTATAATTCGTTTCATACAAGT
TAAAGCCAACTCATGCACGAGTAGTGATTATTGAGTAGTTTAAAAGTATG
ACCTTCAATTCTTTGATTTTAGCATCACATTCAGAGCTAATTTAAAGGAC
GCAAGTACCAATGCACCAGCTAAATTTGGTAAGTTACCCTTTCAAAAGGT
ATTTGCACTATTAAATAACTACTGAAAGATGACTACTCAAAATTTTGACG
TTAAAGCATTTTTACCAACAGAACCGTTGTACCATATAGAAATTAATCTA
ATGATATACAAACGCTTTGATTTAGATTTGGAGATAACATTCGAAGCGGA
TGTCCGAGATTCTGCAGCAGCCGGACGAGCTTTGATTTACGACAACTCTA
CGAAAACACTGGTCAAATCTGTCACCAACAAGGTCACATTCATCCGAGGT
AGATCGTTGCCATACCAACACACCATCTATATCAGTATTGATGTAAGTTA
CACAGTATAATTTTACACATGTTGTCAAGAAACTTTGTAACAACTAGCCT
GCTACCTATTCCCAAATGACAAATGAGCCTAAACAGGATGAAAATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCC
CCCCCCCCCGGCGTTGGTCCTGCTTCTATTTATTCAAAGTACCTTTGCTT
ACGACCGCAAGCTCAAATGAGAAATGAATATTTATAAATGTGATGAAAAT
AACGTTATTCAAGCTCATAGCTCTCTCAGACTGAGAATTCCCCAATAATA
ATATTTCGGCTGAACAAAGCAGTATCTACTGAAGTATTAGTGATATGCAT
CACTGCAATCGACATCAAACCATAGACCCAACAGCTCTGATTGGTTGTAA
GTGACTTAAAATCAGTCACTTGCCACTTGCAACCAATCAGATGTTGGGTC
CGTGATGTAATGTTCAATTGTACTGCGTATCAATTGACAAAAGACTAATG
ATATCCTCTTCTCTATTTATTCAAACAGAAAGCAACAAATTTTGAATCGC
CAGTCCGTCTAACAACCTCCTACCGAACATTCGCATCAAAGAATAATTGT
GAAGACGGCCCATGCGCCATTTTGGATCAGTTTGGTGCATTGAGCGGGTT
TGCCGTGGTGAAATATTTGAAACAATGCGGTACCGATCAAGTCTGCGATG
TTGACCTAGACATTGAGGATACTGAAATTCGTGTGAAAAAAGGGTACATT
TATAGCCTCAATTTTGCAAGTCTTGTTAAAAACTCCCTTTAATTGGCACC
TCTATTATTCGCTTCTTTCTGTAGTGAAACACTAAGCCCGTCCAGCTAGA
AATCGTATATAATACTAAAGATTTNCTAATTGGCACCTCTCTTATTCGCT
TCTTTCTGTAGTGAAACATTAAGCCCGTCCAGCTAGAAATTGTATATAAT
ACTAAAAATTTCTTGGTCCATTGAAGGTCAAATAAGAGTCAATTAAAAAT
TCCTTTTGTATGACATATTCAAACACTTCGACTCACTGATTCCTTGCGCA
TGTAATAATTTGTCTTTTTAAGTCTACCACTTTGGCTTCTTACTCAGCCT
CGCATATTTTATGCGAGTATATGTATCTAACAACCGATGGTGTTTACTGT
ATCACATATTTTAGATTGTTTATAAAAATTTCCAGTGCAGAATCTCAACT
TCTAAAATTTTCTCTTAAAGTGCATCTTCGGTAATCGAACCATTGTACAT
CGGGTCATTTAACGATGAAATCAAACTGATTGCAAAAGTACGCAACAGAA
ATGAGTCGGCATACCAAGCCAAAATGGAAATCAATTTTCACGAAGATTTT
GCTCTCCTTCAAATTTCAGTCAACGGGGTATGTGTTGATTGTTCATTGCT
CTCTTCTAGATCAACTGAAGCTTCTTTTAAAAGAAAGAAACCTATATTAT
TATATAGAAGTTTTTAACAAAAATATTAGCATGTTACAACAAATGGAGTG
CCAGTTGTAAAAAAATAGAAAATCCGCCGCCCTCTCTTATCTGAAATCGG
AACCGATATCTAACGAAATTTAAAATCATTGTACTACGCTACGTTGTATA
TACTACGTTATACATGATATGCAATCTGGTACAGAATACGCCTTTCCATG
CTTCCCGGTAGATGTCTTTCGAACCAGAGGATTTCTCTCAATGCCGGTCA
GAAGAGTACGCAGTTTTTTATAAAAATTCATTTTCTCTAGAGAGACAGCA
TCATTCCTGAATACAACGGAGAGAATAAAAATGGAACTGGAAATGTGGTC
AAATTCTTATTGGACAATCCCATCTTGGAAAGAGAAGTGGTAAGTCGCGT
TGAACAAATTCTTAATCCAATATCTCACCAGTAGAAAAAGTACCAGAAAG
CAAAACATTCGTGAACATAAATCCCTCCTCGATGCCAAATGAAATAGAGC
TCAATAAATAAAGGTCCGTCAAAACTAACTACAATCAGTTGTAAAACATA
CACATATTGTCTAGTAAGCCTTTTAGGAGAGAAGGTCCACGATTTCTAGG
CATCATTAATCATTATTCGTATGTAACCAGTTTCCATTACACTTTACGGA
AACAACAATTTATCCATGAAATTCGAAACTTCTTTTTTTGCACAGGTTGA
TGTCGAAGCTCAATTCATCATCAAAAGTTTAGCGAGACCGAAATTTTTCG
AATATCCATTCAACTTGACCGTTAACTCGTAAGTTTTTTGGTGACATCTT
GATATGAAAAACCTCCTTGTTTCCAATATAAAATATGAAGTCTTCTGGAT
CTCTAACTTTAACTCTGAGGACCAGACCCCAATCGTCCTGTTTGGCCCCC
TAATAAGCATGTCGTAGAAGCTTTGCTTTATGATTAGCTAAAAGATCCTA
GAAAGTTAGTTATTTTCAAGCGGTGGAAAAATAATAAGTTAAAGAAACCA
CAAACCTAAAATAATGCTAAAAGAGTCAAAGTCAAAAAGTTTAAAAATGC
ACTTTCAGTACTGGTAACGACATTAACCAATCAAACAACAGAAAAACCAT
CAAATTACCCATGAAGATCCAATCGTGTGTACAAATCTCTCTTGATCGTG
CTGAAGGGGGTGACGCACGAAACGAAGCACCTAAACTGTTGTACGACAAT
CTCAAGAAACCGATTGCACGACCACAGAGTGCTCAAGAAGCAGGTCCAAA
AGTCGAATACACAATCTTGGTAAGACCATTTGACAGTACATGAGATGTGT
AATGGGTATTCCAGGGATTCGCCCTCTGAAAACTCACAAGACCCCCAGCT
TCACCGATGTACAGCTTTGCTGAGCAAGTTCCATTTCAGGCATATTAGAA
ATTCAATCTTTGTTCGAGAATTTTGAATCTGACCAGTGAAAAGGAGTTCG
CCATGCGAGCGAAATAAATGCTGATTTTAAACGATTCATTTCGAGAGCCT
TTCGAGGTATAGCTAAAAATTAAAAAAGGAACCCGTTTGTTTTTCACCAA
TTTAAGACTGATACTGAATTTCATTCGTTCACATTTTGTTTTCCTCTTCT
TCTTCTTCACAGGTGCAAAACAGTGGGCGAGTACCAATTGATAATATGTC
AATTGACGTCACATTAGTCGATCGTGTTGGAAGAACGAACATTATCTACA
TCACTGAGTTATCGGTAAGCATGTCACAAATAATTAAGTCACCTGGTTGC
TTGTCAATGAGCACTACAGGGTGTCCCTAATAAAAGTATCGAGTTTGAAC
ATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAAATATAATAAC
GTTCNACTTTGCTTTATGATTAGCTAAAAGATCCTAGAAAGTTAGTTATT
TTCAAGCGGTGGAAAGATAATAAGCTAAAGAAACCACAAACCTAAAATAA
TGCTAAAAGAGTCAAAGTCAAAAAGTTTAAAAATGCACAACTTGATATAT
CTTTCAGTACTGGTAACGACATTAACCAATCAAACAACAGAAAAACCATC
AAATTACCCATGAAGATCCAATCGTGTGTACAAATCTCTCTTGATCGTGC
TGAAGGGGGTGACGCACGAAACGAAGCACCTAAACTGTTGTACGACAATC
TCAAGAAACCGATTGCACGACCACAGAGTGCTCAAGAAGCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038895XLOC_038895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062062-exon-scaffold_361-1575043694:1541215..1541433TCONS_00062062-exon-scaffold_361-1575043694:1541215..1541433Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1540772..1540903TCONS_00062062-exon-scaffold_361-1575043694:1540772..1540903Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1540075..1540307TCONS_00062062-exon-scaffold_361-1575043694:1540075..1540307Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1539648..1539761TCONS_00062062-exon-scaffold_361-1575043694:1539648..1539761Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1539216..1539268TCONS_00062062-exon-scaffold_361-1575043694:1539216..1539268Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1538764..1538872TCONS_00062062-exon-scaffold_361-1575043694:1538764..1538872Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1538361..1538466TCONS_00062062-exon-scaffold_361-1575043694:1538361..1538466Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1537922..1538019TCONS_00062062-exon-scaffold_361-1575043694:1537922..1538019Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1537619..1537694TCONS_00062062-exon-scaffold_361-1575043694:1537619..1537694Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1537335..1537380TCONS_00062062-exon-scaffold_361-1575043694:1537335..1537380Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1536903..1537004TCONS_00062062-exon-scaffold_361-1575043694:1536903..1537004Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1536706..1536761TCONS_00062062-exon-scaffold_361-1575043694:1536706..1536761Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1536392..1536558TCONS_00062062-exon-scaffold_361-1575043694:1536392..1536558Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1535441..1535655TCONS_00062062-exon-scaffold_361-1575043694:1535441..1535655Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1534807..1534963TCONS_00062062-exon-scaffold_361-1575043694:1534807..1534963Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1534345..1534443TCONS_00062062-exon-scaffold_361-1575043694:1534345..1534443Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1533956..1534038TCONS_00062062-exon-scaffold_361-1575043694:1533956..1534038Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1575043694:1532541..1532726TCONS_00062062-exon-scaffold_361-1575043694:1532541..1532726Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1541215..1541433TCONS_00062062-exon-scaffold_361-1510915933:1541215..1541433Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1540772..1540903TCONS_00062062-exon-scaffold_361-1510915933:1540772..1540903Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1540075..1540307TCONS_00062062-exon-scaffold_361-1510915933:1540075..1540307Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1539648..1539761TCONS_00062062-exon-scaffold_361-1510915933:1539648..1539761Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1539216..1539268TCONS_00062062-exon-scaffold_361-1510915933:1539216..1539268Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1538764..1538872TCONS_00062062-exon-scaffold_361-1510915933:1538764..1538872Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1538361..1538466TCONS_00062062-exon-scaffold_361-1510915933:1538361..1538466Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1537922..1538019TCONS_00062062-exon-scaffold_361-1510915933:1537922..1538019Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1537619..1537694TCONS_00062062-exon-scaffold_361-1510915933:1537619..1537694Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1537335..1537380TCONS_00062062-exon-scaffold_361-1510915933:1537335..1537380Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1536903..1537004TCONS_00062062-exon-scaffold_361-1510915933:1536903..1537004Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1536706..1536761TCONS_00062062-exon-scaffold_361-1510915933:1536706..1536761Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1536392..1536558TCONS_00062062-exon-scaffold_361-1510915933:1536392..1536558Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1535441..1535655TCONS_00062062-exon-scaffold_361-1510915933:1535441..1535655Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1534807..1534963TCONS_00062062-exon-scaffold_361-1510915933:1534807..1534963Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1534345..1534443TCONS_00062062-exon-scaffold_361-1510915933:1534345..1534443Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1533956..1534038TCONS_00062062-exon-scaffold_361-1510915933:1533956..1534038Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1510915933:1532541..1532726TCONS_00062062-exon-scaffold_361-1510915933:1532541..1532726Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1541215..1541433TCONS_00062062-exon-scaffold_361-1491911889:1541215..1541433Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1540772..1540903TCONS_00062062-exon-scaffold_361-1491911889:1540772..1540903Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1540075..1540307TCONS_00062062-exon-scaffold_361-1491911889:1540075..1540307Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1539648..1539761TCONS_00062062-exon-scaffold_361-1491911889:1539648..1539761Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1539216..1539268TCONS_00062062-exon-scaffold_361-1491911889:1539216..1539268Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1538764..1538872TCONS_00062062-exon-scaffold_361-1491911889:1538764..1538872Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1538361..1538466TCONS_00062062-exon-scaffold_361-1491911889:1538361..1538466Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1537922..1538019TCONS_00062062-exon-scaffold_361-1491911889:1537922..1538019Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1537619..1537694TCONS_00062062-exon-scaffold_361-1491911889:1537619..1537694Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1537335..1537380TCONS_00062062-exon-scaffold_361-1491911889:1537335..1537380Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1536903..1537004TCONS_00062062-exon-scaffold_361-1491911889:1536903..1537004Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1536706..1536761TCONS_00062062-exon-scaffold_361-1491911889:1536706..1536761Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1536392..1536558TCONS_00062062-exon-scaffold_361-1491911889:1536392..1536558Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1535441..1535655TCONS_00062062-exon-scaffold_361-1491911889:1535441..1535655Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1534807..1534963TCONS_00062062-exon-scaffold_361-1491911889:1534807..1534963Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1534345..1534443TCONS_00062062-exon-scaffold_361-1491911889:1534345..1534443Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1533956..1534038TCONS_00062062-exon-scaffold_361-1491911889:1533956..1534038Clytia hemisphaericaexon
TCONS_00062062-exon-scaffold_361-1491911889:1532541..1532726TCONS_00062062-exon-scaffold_361-1491911889:1532541..1532726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1532541..1541433 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.00493059	0	0	4.17513	5.04992	0	0.00535926	1.9163	0	3.34046e-06	0	1.87333	0.369511	0	0.64308	0.190336	0	0	0	0	0	0.0186537	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00062062 vs. Swiss-Prot (Human)
Match: ITAV (Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.340e-37
Identity = 174/635 (27.40%), Postives = 277/635 (43.62%), Query Frame = 3 
Query:   15 ESLGVTISTTENTVTACASMTRFKPTNQACVDDPESKSCLFRRNYFMGRCPVFDEDLKFKYSDIPCYKGSLNRTPHLNRYGMCMLGTGGVQSFNNEGKLYQFISAPGSGRYIGAVVSTVDGDKNSNFVNKVNLK------DDTTFLRSAEVKNDDSKSFTAQHAMVGYSTAKGNFTGEVLPGLASGSPRAALFGGQVMIYQYRLKNGTATPDDLDDDSELTIKQIITNPAPSKGGPSLFGASVAAIDINGDGFDDLAVGAPLFANSVGNRIGQDEGRVFIFINNKNGQFSFKQNMTLEGENVESSRFGSTVVXXXXXXXXXXXXLAVGAPWGGKDGNGAVYIYNVRDGQLTKTHSQVLSSPSGA-----GFGYSISSAK-IDTRVYPALAVGAPESGRVFLFKAKTIITLEDNLWIDRITIPTDESNCEF--GKVKYQCITFRANLK-DASTNAPAKFDLEITFEAD-VRDSAAAGRAL-IYDNSTKTLVKSVTNKVTFIRGRSLPYQHTIYISIDKATNFE--SPVRLTTSYRTFASKNNCEDGPCAILDQFGALSGFAVVKYLKQCGTDQVCDVDLDIEDTEIRVKKGASSVIEPLYIGSFNDEIKLIAKVRNRNESAYQAKM--EINFHEDF 1856
            +  G ++ + ++ + ACA +  ++ T      +P            +G C + D     +Y+  PC      R+  ++  G      G    F    ++   +  PGS  + G ++S    D+ +  V+K +        ++    R+A+   DDS         +GYS A G+F G+ +    SG PRAA   G  M+Y Y  KN ++           T +Q+           + FG SVAA DINGD + D+ +GAPLF +   +   Q+ G+V + +   +G F   Q   L G  V  +RFGS +  +GD++ DG +D+A+ AP+GG+D  G VYI+N R   L    SQ+L     A      FGYS+  A  ID   YP L VGA    R  L++A+ +IT+   L +    +  D   C      +K  C   R  LK D     P K + ++    D ++   A  RAL +Y  S      S +  +T  RG  +  +  I    D++   +  +P+ +   YR          G   IL+QF   +       L  CG D VC   L++            S  + +YIG  ++ + LI K +N+ E AY+A++   I    DF
Sbjct:  122 QWFGASVRSKQDKILACAPLYHWR-TEMKQEREP------------VGTCFLQDGTKTVEYA--PC------RSQDIDADGQGFCQGGFSIDFTKADRV--LLGGPGSFYWQGQLIS----DQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDS--------YLGYSVAVGDFNGDGIDDFVSGVPRAARTLG--MVYIYDGKNMSSL-------YNFTGEQM----------AAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDF---QTTKLNGFEV-FARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRS-----PSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVS---------VDSDQKKIYIGD-DNPLTLIVKAQNQGEGAYEAELIVSIPLQADF 683
The following BLAST results are available for this feature:
BLAST of TCONS_00062062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITAV4.340e-3727.40Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=... [more]
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