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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062059 ID=TCONS_00062059|Name=TCONS_00062059|organism=Clytia hemisphaerica|type=transcript|length=1762bp
tgggtTAGTTATACAACTAGCCTGTATGACTTACAAATCCATTCATTGTC
GGTTTTCAAGTTGTTTGGATGaagttttttatattgaatGTTCATtacta
tttttgattttttcgatatAGGACTaccaataataaataaaaacagacac
acacacaaagAACAATGGAGTTTAAATCACCAGAATGCGTTTACTGCAGT
CGAACATACAGCAAATTCAACGAACCCATCTACATCGTATGTCTGTGTGA
ACAAAGTGCTAAATATGCCCATGGAAGTTGTTTTCGTGGATATCTCTCTG
ATCACAGCTTTGGTGTTTGTGGGCACTGCTTCACCAAAACTAGAATCGTC
ACGGATGGTTACAAACCCTTCTCTGAGTGGAAAGTGAAGTGGAAGCCATT
TTGTGGATTCTGGAAACGTTTCAACCACAACAACAAATACTCAAAGATCG
TCTACTGTCACGAAGTGCAAGTCAACAAACATAAGAAGAAGATCACATAC
GAAGATGTTCCATCTGAAATCCCATGGAAGAATGAAATTGAAGTCGAAGA
AGAAACCAATACCCTGTTCGAAATCCCTGGCGTTGTCGAGAAACAGCACT
CCCTAGACGAAGGTGATGGTTCTAGTGATAATGCACTTGAAAGTGAACCT
GAAAACCGACAAATTAATCGAATTCCAACAGTCTTTAAACCAAGAGGATA
TCCCTTCGTCAAACGACAACAAGAAGATACAACGGCTGGGAACCTTGAAT
CTTCATTTGAGTATTATATGAACTCCAGCAACCGTGGTAGTTTCAGAAGC
CAAAGAAACTTTTACGATAATAACTCCATTTACACCATTACAACAGAAAC
GAACGATTCGCCTTCTGAATACCAATACAGCGCTTCTGAAGATGATAACA
AAAGCACCGTATCCAATCAAAACAGGCGTGCATCGAAACTACGCACCATT
GGGCGGTCCTTTATGAAGAAACTCACTTCAGAGCGTAGTTTTGAAGAAGC
GAGCAGCGAGAGCGGCGCCAGTCGGCGGCCATCTAATAACAATACCGTAC
AACAATTTTACACCATTTCCGAACTCCAAAATACAGAGGAAAAAGAGGAA
GTGGCCGTGTTACCTAGAGACAATGATATCATTTACATGCATTCAAGaac
taattcaaatttacaAGAAGACTATTGGGGTATGAATCATCAAGAGGACG
TCAATGCTGATGCTAAGAAGAAGAAGTTCACCAAAAGTCGCAACAAAATG
AAGGGTTCAGCTTCTTCAAATTCGACCTCGTCTACAGCATCTTTCAATAA
TGATTCTTCAACAAAATTATACGGTGTTTCAACTAACATGTTCAGACATA
ATTCGAACACTATGACAGATGCACCAGAGCCTCAAACCTCTTTTACCACG
ACTCGTATTTCTACCGGTACAGTAGATAAAGAGCGTCAAACAAATCTTTT
CTATGCTCCTTAAACGCGCCCTCTGTTCAGCTTTCTCTATGCTTGATATT
TTCGTGTTAtgtttttaaagaattctttcTAACTTAATTTCCAGAGCTGA
GTTATTTTAAAGCATGTTTATAGCATACGAAATAAATTATCGTGACAACA
AACAAGTTTTTATTAGCTGGTTGACAAACGGTGATGAAACAGTTAACTTG
ATCATGTTGTTGCCAACTTTTCTATTGCGTAACCCTTTTGAATATGAACC
GAAACTTCTTTTATTATATGTTGTACAGTGACGTAGCAACtaggggggca
aggggggggggg Run BLAST on NCBI protein sequence of TCONS_00062059-protein >TCONS_00062059-protein ID=TCONS_00062059-protein|Name=TCONS_00062059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MEFKSPECVYCSRTYSKFNEPIYIVCLCEQSAKYAHGSCFRGYLSDHSFG
VCGHCFTKTRIVTDGYKPFSEWKVKWKPFCGFWKRFNHNNKYSKIVYCHE
VQVNKHKKKITYEDVPSEIPWKNEIEVEEETNTLFEIPGVVEKQHSLDEG
DGSSDNALESEPENRQINRIPTVFKPRGYPFVKRQQEDTTAGNLESSFEY
YMNSSNRGSFRSQRNFYDNNSIYTITTETNDSPSEYQYSASEDDNKSTVS
NQNRRASKLRTIGRSFMKKLTSERSFEEASSESGASRRPSNNNTVQQFYT
ISELQNTEEKEEVAVLPRDNDIIYMHSRTNSNLQEDYWGMNHQEDVNADA
KKKKFTKSRNKMKGSASSNSTSSTASFNNDSSTKLYGVSTNMFRHNSNTM
TDAPEPQTSFTTTRISTGTVDKERQTNLFYAP Run BLAST on NCBI transcript from alignment at scaffold_361:1483838..1487281- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062059 ID=TCONS_00062059|Name=TCONS_00062059|organism=Clytia hemisphaerica|type=transcript|length=3444bp|location=Sequence derived from alignment at scaffold_361:1483838..1487281- (Clytia hemisphaerica)
TGGGTTAGTTATACAACTAGCCTGTATGACTTACAAATCCATTCATTGTC
GGTTTTCAAGTTGTTTGGATGAAGTTTTTTATATTGAATGTTCATTACTA
TTTTTGATTTTTTCGATATAGGACTACCAATAATAAATAAAAACAGACAC
ACACACAAAGAACAATGGAGTTTAAATCACCAGAATGCGTTTACTGCAGT
CGAACATACAGCAAATTCAACGAACCCATCTACATCGTATGTCTGTGTGA
ACAAAGTGCTAAATATGCCCATGGAAGTTGTTTTCGTGGATATCTCTCTG
ATCACAGCTTTGGTGTTTGTGGGCACTGCTTCACCAAAACTAGAATCGTC
ACGGATGGTTACAAACCCTTCTCTGAGGTGAGTTAGTTCATCTTGATATT
TCTTTGCGTTATTGTTTGAAAATACTTCAGGTCGTACAAACGGGACAAGC
TGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCTTTAAGATGTAAT
AAAAGAATCTCATTACTTTTTCTAAAGAACGCGTCATCTCTATCACTTTC
AATGACCAATTAGTGAAGTATCTTGTAAAAACTCCAGCTCATCCCGTACA
AACATTTACTTTCGAGAATTTGACGAAAAAAATCCTTTTCGCGAGCATAA
TCTTTTGCGAATCAAGACATGAAAAAATGATAAGTTTCACATGAAAAAAT
GGACAAATATTCTTCAATAGGCTCGAAACTTTTGTCTTTTGAATCATTAG
GCTTTAACAGGGTAGAAAGTACCATAAATGATACATTTTATTCAAAGTTT
GAAATTTTACAGATTTTCTGTTTTTTTTTTAAGAATTTTTTTTGCAAGCA
TAATGGCGAATGGCCCTTCCAATAATTTTCTGAGACATTTATTTTCGCGA
AAAGTGTCAAAATTTGCGAAAATCGTGAAAGTTTCTGTACGCCTAAAGTA
TATGCAAATGGGGCGTATAGATGCTCAAAATTCTTTCTGTAAATTTCCGT
TGTATGCTTTAGTAGCTTACGATGATCCATGAAACATCATTTTCTGTTTT
GGAGATATTTTAAATGACGTGGTTTTGGGTATACGTCAAACATTCGGAAA
ACGTCATTAAATTTTCTTCTCGGGAGCGGAACATATTTGGCGCAAATCCT
GAAACGAATGTACGACGACTTTTTCCTGTTATAAATGATCCCTTTATGCA
AATACATTTTTCGACAATGGCAACGTTCCAACTAAACTTTCAGCAATCCT
TGATAAGAAAGTTGCTGCATGGCGGCTGAAACTTCGCTTTAAGCAATTTT
TCTAAATTACCTTTTTCAGTGCGCAATTTTTGTGATTTATTGACTGATTT
GTTGCGGTCTTAATTCCTACACAAAATTTACCTCAAAAGTCATAAATTGA
AAAGTGCAATTTTGATGTCGTGATTTATTTGACATTGTCCTTGAACCCCA
TAAATTGATTGGTCACCACAACAAAGGGCGCCGTGCAGTCAACACCTGCC
TTGAATTTAAAAGTTTACATTTTCATTAAAATTGTGGCTACCACTTGTAA
ACAAAATTCATCCACATGATAAGATTGTCTTTTCGTAAGCTTCAATTTTG
CCACATGCTCTAAATTTCTAAAAGCAAAGTCTTTTCAAGGAAGTAATTGT
ATTTCGGTATCTTTGTTTTTCAAAATAAAAAGGAAGGTTAGGAAGTATAA
ATATTTTTCATTATCTATAATGAATTCCTATGTCCCGCTCAACCTTAATG
TCACAAAATTAGCTTTTCAGTTTTCTCCTATCTCTGAATACTTAACAATT
TAAATACAACAATCATTCAATAAAGATACTATTTACGTTTTTTTATAAAA
ACAAACCAAGTCATGAATATTTGCAGGCTTTGTAGACTCTAACACACCCA
ATTTCTTTGGAAATTGCACAAACTACTCACAAAATGGTGAAAATAAGAAC
ATTTTAAGAACATTCTAGGCTTAAAACTGAAAAGTTAAAAAGATCCAAAG
ATTTGTTAATATATTAATTTAGAATGTTGTGAAAATGATTTCTTTTATCT
CTTTTTCAGTGGAAAGTGAAGTGGAAGCCATTTTGTGGATTCTGGAAACG
TTTCAACCACAACAACAAATACTCAAAGATCGTCTACTGTCACGAAGTGC
AAGTCAACAAACATAAGAAGAAGATCACATACGAAGATGTTCCATCTGAA
ATCCCATGGAAGAATGAAATTGAAGTCGAAGAAGAAACCAATACCCTGTT
CGAAATCCCTGGCGTTGTCGAGAAACAGCACTCCCTAGACGAAGGTGATG
GTTCTAGTGATAATGCACTTGAAAGTGAACCTGAAAACCGACAAATTAAT
CGAATTCCAACAGTCTTTAAACCAAGAGGATATCCCTTCGTCAAACGACA
ACAAGAAGATACAACGGCTGGGAACCTTGAATCTTCATTTGAGTATTATA
TGAACTCCAGCAACCGTGGTAGTTTCAGAAGCCAAAGAAACTTTTACGAT
AATAACTCCATTTACACCATTACAACAGAAACGAACGATTCGCCTTCTGA
ATACCAATACAGCGCTTCTGAAGATGATAACAAAAGCACCGTATCCAATC
AAAACAGGCGTGCATCGAAACTACGCACCATTGGGCGGTCCTTTATGAAG
AAACTCACTTCAGAGCGTAGTTTTGAAGAAGCGAGCAGCGAGAGCGGCGC
CAGTCGGCGGCCATCTAATAACAATACCGTACAACAATTTTACACCATTT
CCGAACTCCAAAATACAGAGGAAAAAGAGGAAGTGGCCGTGTTACCTAGA
GACAATGATATCATTTACATGCATTCAAGAACTAATTCAAATTTACAAGA
AGACTATTGGGGTATGAATCATCAAGAGGACGTCAATGCTGATGCTAAGA
AGAAGAAGTTCACCAAAAGTCGCAACAAAATGAAGGGTTCAGCTTCTTCA
AATTCGACCTCGTCTACAGCATCTTTCAATAATGATTCTTCAACAAAATT
ATACGGTGTTTCAACTAACATGTTCAGACATAATTCGAACACTATGACAG
ATGCACCAGAGCCTCAAACCTCTTTTACCACGACTCGTATTTCTACCGGT
ACAGTAGATAAAGAGCGTCAAACAAATCTTTTCTATGCTCCTTAAACGCG
CCCTCTGTTCAGCTTTCTCTATGCTTGATATTTTCGTGTTATGTTTTTAA
AGAATTCTTTCTAACTTAATTTCCAGAGCTGAGTTATTTTAAAGCATGTT
TATAGCATACGAAATAAATTATCGTGACAACAAACAAGTTTTTATTAGCT
GGTTGACAAACGGTGATGAAACAGTTAACTTGATCATGTTGTTGCCAACT
TTTCTATTGCGTAACCCTTTTGAATATGAACCGAAACTTCTTTTATTATA
TGTTGTACAGTGACGTAGCAACTAGGGGGGCAAGGGGGGGGGGG Coding sequence (CDS) from alignment at scaffold_361:1483838..1487281- >TCONS_00062059 ID=TCONS_00062059|Name=TCONS_00062059|organism=Clytia hemisphaerica|type=CDS|length=2598bp|location=Sequence derived from alignment at scaffold_361:1483838..1487281- (Clytia hemisphaerica)
TGGAAAGTGAAGTGGAAGCCATTTTGTGGATTCTGGAAACGTTTCAACCA
CAACAACAAATACTCAAAGATCGTCTACTGTCACGAAGTGCAAGTCAACA
AACATAAGAAGAAGATCACATACGAAGATGTTCCATCTGAAATCCCATGG
AAGAATGAAATTGAAGTCGAAGAAGAAACCAATACCCTGTTCGAAATCCC
TGGCGTTGTCGAGAAACAGCACTCCCTAGACGAAGGTGATGGTTCTAGTG
ATAATGCACTTGAAAGTGAACCTGAAAACCGACAAATTAATCGAATTCCA
ACAGTCTTTAAACCAAGAGGATATCCCTTCGTCAAACGACAACAAGAAGA
TACAACGGCTGGGAACCTTGAATCTTCATTTGAGTATTATATGAACTCCA
GCAACCGTGGTAGTTTCAGAAGCCAAAGAAACTTTTACGATAATAACTCC
ATTTACACCATTACAACAGAAACGAACGATTCGCCTTCTGAATACCAATA
CAGCGCTTCTGAAGATGATAACAAAAGCACCGTATCCAATCAAAACAGGC
GTGCATCGAAACTACGCACCATTGGGCGGTCCTTTATGAAGAAACTCACT
TCAGAGCGTAGTTTTGAAGAAGCGAGCAGCGAGAGCGGCGCCAGTCGGCG
GCCATCTAATAACAATACCGTACAACAATTTTACACCATTTCCGAACTCC
AAAATACAGAGGAAAAAGAGGAAGTGGCCGTGTTACCTAGAGACAATGAT
ATCATTTACATGCATTCAAGAACTAATTCAAATTTACAAGAAGACTATTG
GGGTATGAATCATCAAGAGGACGTCAATGCTGATGCTAAGAAGAAGAAGT
TCACCAAAAGTCGCAACAAAATGAAGGGTTCAGCTTCTTCAAATTCGACC
TCGTCTACAGCATCTTTCAATAATGATTCTTCAACAAAATTATACGGTGT
TTCAACTAACATGTTCAGACATAATTCGAACACTATGACAGATGCACCAG
AGCCTCAAACCTCTTTTACCACGACTCGTATTTCTACCGGTACAGTAGAT
AAAGAGCGTCAAACAAATCTTTTCTATGCTCCTTAAATGGAGTTTAAATC
ACCAGAATGCGTTTACTGCAGTCGAACATACAGCAAATTCAACGAACCCA
TCTACATCGTATGTCTGTGTGAACAAAGTGCTAAATATGCCCATGGAAGT
TGTTTTCGTGGATATCTCTCTGATCACAGCTTTGGTGTTTGTGGGCACTG
CTTCACCAAAACTAGAATCGTCACGGATGGTTACAAACCCTTCTCTGAGT
GGAAAGTGAAGTGGAAGCCATTTTGTGGATTCTGGAAACGTTTCAACCAC
AACAACAAATACTCAAAGATCGTCTACTGTCACGAAGTGCAAGTCAACAA
ACATAAGAAGAAGATCACATACGAAGATGTTCCATCTGAAATCCCATGGA
AGAATGAAATTGAAGTCGAAGAAGAAACCAATACCCTGTTCGAAATCCCT
GGCGTTGTCGAGAAACAGCACTCCCTAGACGAAGGTGATGGTTCTAGTGA
TAATGCACTTGAAAGTGAACCTGAAAACCGACAAATTAATCGAATTCCAA
CAGTCTTTAAACCAAGAGGATATCCCTTCGTCAAACGACAACAAGAAGAT
ACAACGGCTGGGAACCTTGAATCTTCATTTGAGTATTATATGAACTCCAG
CAACCGTGGTAGTTTCAGAAGCCAAAGAAACTTTTACGATAATAACTCCA
TTTACACCATTACAACAGAAACGAACGATTCGCCTTCTGAATACCAATAC
AGCGCTTCTGAAGATGATAACAAAAGCACCGTATCCAATCAAAACAGGCG
TGCATCGAAACTACGCACCATTGGGCGGTCCTTTATGAAGAAACTCACTT
CAGAGCGTAGTTTTGAAGAAGCGAGCAGCGAGAGCGGCGCCAGTCGGCGG
CCATCTAATAACAATACCGTACAACAATTTTACACCATTTCCGAACTCCA
AAATACAGAGGAAAAAGAGGAAGTGGCCGTGTTACCTAGAGACAATGATA
TCATTTACATGCATTCAAGAACTAATTCAAATTTACAAGAAGACTATTGG
GGTATGAATCATCAAGAGGACGTCAATGCTGATGCTAAGAAGAAGAAGTT
CACCAAAAGTCGCAACAAAATGAAGGGTTCAGCTTCTTCAAATTCGACCT
CGTCTACAGCATCTTTCAATAATGATTCTTCAACAAAATTATACGGTGTT
TCAACTAACATGTTCAGACATAATTCGAACACTATGACAGATGCACCAGA
GCCTCAAACCTCTTTTACCACGACTCGTATTTCTACCGGTACAGTAGATA
AAGAGCGTCAAACAAATCTTTTCTATGCTCCTTAAATGGAGTTTAAATCA
CCAGAATGCGTTTACTGCAGTCGAACATACAGCAAATTCAACGAACCCAT
CTACATCGTATGTCTGTGTGAACAAAGTGCTAAATATGCCCATGGAAGTT
GTTTTCGTGGATATCTCTCTGATCACAGCTTTGGTGTTTGTGGGCACTGC
TTCACCAAAACTAGAATCGTCACGGATGGTTACAAACCCTTCTCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062059-exon-scaffold_361-1575043694:1486905..1487281 | TCONS_00062059-exon-scaffold_361-1575043694:1486905..1487281 | Clytia hemisphaerica | exon |
| TCONS_00062059-exon-scaffold_361-1575043694:1483838..1485222 | TCONS_00062059-exon-scaffold_361-1575043694:1483838..1485222 | Clytia hemisphaerica | exon |
| TCONS_00062059-exon-scaffold_361-1510915933:1486905..1487281 | TCONS_00062059-exon-scaffold_361-1510915933:1486905..1487281 | Clytia hemisphaerica | exon |
| TCONS_00062059-exon-scaffold_361-1510915933:1483838..1485222 | TCONS_00062059-exon-scaffold_361-1510915933:1483838..1485222 | Clytia hemisphaerica | exon |
| TCONS_00062059-exon-scaffold_361-1491911889:1486905..1487281 | TCONS_00062059-exon-scaffold_361-1491911889:1486905..1487281 | Clytia hemisphaerica | exon |
| TCONS_00062059-exon-scaffold_361-1491911889:1483838..1485222 | TCONS_00062059-exon-scaffold_361-1491911889:1483838..1485222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1483838..1487281 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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