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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062054 ID=TCONS_00062054|Name=TCONS_00062054|organism=Clytia hemisphaerica|type=transcript|length=514bp
AAAATCGAggcggtaaaaatggtaggctcACTTCGCAGGTAAAAACATGG
CTGAAAACACGAAGTTTTGAGTGTTTATCTCTCAAAGTCATGCCTGGATC
CAATTGCTGCATCGTTGGATGTGGTTCTTCCAGGAGAATCAAAGGAATTG
GAATCTTCAAGCTTCCAAAAGCAACAAAtgaagtaaataaacaatggaGG
GATGATATTCTTGGCATCATACTACGAACGAGACAACTAGATGCAGATTT
CAAAAACCAACTTGACAATGACAATATCAGCATAtgtgaaaaacatttta
aaccTGAAGACCTGGAAAAATtTCCACCGATAAAAGAAGGAGGATCCGAA
CGAAAGAAACTCATCACAGGATGTATACCTACCATTAATCTACCACAAAG
AACGCACGATAAAGAGAATTTTGCTGTAAAAAGGAAGCCACCTATTGAAA
GGACATTAATACCTCCCAAGAAAAGATCTCATGAATATGAAACGTTTACT
GAATTGTGCAAACG Run BLAST on NCBI protein sequence of TCONS_00062054-protein >TCONS_00062054-protein ID=TCONS_00062054-protein|Name=TCONS_00062054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
NRGGKNGRLTSQVKTWLKTRSFECLSLKVMPGSNCCIVGCGSSRRIKGIG
IFKLPKATNEVNKQWRDDILGIILRTRQLDADFKNQLDNDNISICEKHFK
PEDLEKFPPIKEGGSERKKLITGCIPTINLPQRTHDKENFAVKRKPPIER
TLIPPKKRSHEYETFTELCK Run BLAST on NCBI transcript from alignment at scaffold_361:1384581..1385416- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062054 ID=TCONS_00062054|Name=TCONS_00062054|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at scaffold_361:1384581..1385416- (Clytia hemisphaerica)
AAAATCGAGGCGGTAAAAATGGTAGGCTCACTTCGCAGGTAAAAACATGG
CTGAAAACACGAAGTTTTGAGTGTTTATCTCTCAAAGTCATGCCTGGATC
CAATTGCTGCATCGTTGGATGTGGTTCTTCCAGGAGAATCAAAGGAATTG
GAATCTTCAAGCTTCCAAAAGCAACAAATGAAGTAAATAAACAATGGAGG
GATGATATTCTTGGCATCATACTACGAACGAGACAACTAGATGCAGATTT
CAAAAACCAACTTGACAATGACAATATCAGCATATGTGAAAAACATTTTA
AACCTGAAGACCTGGAAAAATGTAAGTTTCTTCCATTCTTCAAAAAGTTT
GTGGTACTGGATAAAAATCTTTTTACTCTTGATTATGTTATGACATATGT
ACACCTATCAAAAGCTATCATAGATTTTACAAACAGTAATATTCTTATCT
TCTTATTTTATATACTGCATAATTTTCTGCAAGATTATTAAGGAGATTTC
AAGAGTGTAGTAACTCAACCTACACTATGCTATCCCCTTTCAAGATGTGA
ATCATTGACATGACATGGTGACTGAATTTACTAGTTTGTCTTCTGTCTGT
GTAATTTGCAATAAAATATTTTTAATCAACTTTTTTTTTGCAGTTCCACC
GATAAAAGAAGGAGGATCCGAACGAAAGAAACTCATCACAGGATGTATAC
CTACCATTAATCTACCACAAAGAACGCACGATAAAGAGAATTTTGCTGTA
AAAAGGAAGCCACCTATTGAAAGGACATTAATACCTCCCAAGAAAAGATC
TCATGAATATGAAACGTTTACTGAATTGTGCAAACG Coding sequence (CDS) from alignment at scaffold_361:1384581..1385416- >TCONS_00062054 ID=TCONS_00062054|Name=TCONS_00062054|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_361:1384581..1385416- (Clytia hemisphaerica)
TTCCACCGATAAAAGAAGGAGGATCCGAACGAAAGAAACTCATCACAGGA
TGTATACCTACCATTAATCTACCACAAAGAACGCACGATAAAGAGAATTT
TGCTGTAAAAAGGAAGCCACCTATTGAAAGGACATTAATACCTCCCAAGA
AAAGATCTCATGAATATGAAACGTTTACTGAATTGTGCAAAAATCGAGGC
GGTAAAAATGGTAGGCTCACTTCGCAGGTAAAAACATGGCTGAAAACACG
AAGTTTTGAGTGTTTATCTCTCAAAGTCATGCCTGGATCCAATTGCTGCA
TCGTTGGATGTGGTTCTTCCAGGAGAATCAAAGGAATTGGAATCTTCAAG
CTTCCAAAAGCAACAAATGAAGTAAATAAACAATGGAGGGATGATATTCT
TGGCATCATACTACGAACGAGACAACTAGATGCAGATTTCAAAAACCAAC
TTGACAATGACAATATCAGCATATGTGAAAAACATTTTAAACCTGAAGAC
CTGGAAAAATTTCCACCGATAAAAGAAGGAGGATCCGAACGAAAGAAACT
CATCACAGGATGTATACCTACCATTAATCTACCACAAAGAACGCACGATA
AAGAGAATTTTGCTGTAAAAAGGAAGCCACCTATTGAAAGGACATTAATA
CCTCCCAAGAAAAGATCTCATGAATATGAAACGTTTACTGAATTGTGCAA
AAATCGAGGCGGTAAAAATGGTAGGCTCACTTCGCAGGTAAAAACATGGC
TGAAAACACGAAGTTTTGAGTGTTTATCTCTCAAAGTCATGCCTGGATCC
AATTGCTGCATCGTTGGATGTGGTTCTTCCAGGAGAATCAAAGGAATTGG
AATCTTCAAGCTTCCAAAAGCAACAAATGAAGTAAATAAACAATGGAGGG
ATGATATTCTTGGCATCATACTACGAACGAGACAACTAGATGCAGATTTC
AAAAACCAACTTGACAATGACAATATCAGCATATGTGAAAAACATTTTAA
ACCTGAAGACCTGGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062054-exon-scaffold_361-1575043694:1385096..1385416 | TCONS_00062054-exon-scaffold_361-1575043694:1385096..1385416 | Clytia hemisphaerica | exon |
| TCONS_00062054-exon-scaffold_361-1575043694:1384581..1384773 | TCONS_00062054-exon-scaffold_361-1575043694:1384581..1384773 | Clytia hemisphaerica | exon |
| TCONS_00062054-exon-scaffold_361-1510915933:1385096..1385416 | TCONS_00062054-exon-scaffold_361-1510915933:1385096..1385416 | Clytia hemisphaerica | exon |
| TCONS_00062054-exon-scaffold_361-1510915933:1384581..1384773 | TCONS_00062054-exon-scaffold_361-1510915933:1384581..1384773 | Clytia hemisphaerica | exon |
| TCONS_00062054-exon-scaffold_361-1491911889:1385096..1385416 | TCONS_00062054-exon-scaffold_361-1491911889:1385096..1385416 | Clytia hemisphaerica | exon |
| TCONS_00062054-exon-scaffold_361-1491911889:1384581..1384773 | TCONS_00062054-exon-scaffold_361-1491911889:1384581..1384773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1384581..1385416 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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