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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062052 ID=TCONS_00062052|Name=TCONS_00062052|organism=Clytia hemisphaerica|type=transcript|length=1910bpRun BLAST on NCBI protein sequence of TCONS_00062052-protein >TCONS_00062052-protein ID=TCONS_00062052-protein|Name=TCONS_00062052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp MWCDNRLLLFGVLLLTFLVQAHITAAANSKEDEFAEFDRDPDAQEEEDDTRun BLAST on NCBI transcript from alignment at scaffold_361:1231996..1253024- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062052 ID=TCONS_00062052|Name=TCONS_00062052|organism=Clytia hemisphaerica|type=transcript|length=21029bp|location=Sequence derived from alignment at scaffold_361:1231996..1253024- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1231996..1253024- >TCONS_00062052 ID=TCONS_00062052|Name=TCONS_00062052|organism=Clytia hemisphaerica|type=CDS|length=21690bp|location=Sequence derived from alignment at scaffold_361:1231996..1253024- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062052 vs. Swiss-Prot (Human)
Match: CCD47 (Coiled-coil domain-containing protein 47 OS=Homo sapiens GN=CCDC47 PE=1 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 6.343e-104 Identity = 173/351 (49.29%), Postives = 244/351 (69.52%), Query Frame = 1
Query: 715 LKITKVPVHLRAGWQAFYLELVTLAGILVYAANFFTGKSKNSKLATAWFKAHKPLLEQHFSIVGDDGMSKEPQS-GVLVKESESVYTLWCTGRQYCEGMLVELRLLKRHDLVSVMAQMMRPKSELIKVTVYMDDEDMDNFVFALLPKKQAAKYQKELQDLSYFCGDK-KSAERFNL-ENHSVLSESGEVTDFILSQQVCNIIKKNEECFESLHFSDQFVGPKKDETEETEGSN-KLKKPKKVLLFEFKIPGNGRTKVASMGATEQLVKMVLFFIDRVKSLRLGQQARSKSDKKRREVEQSFSKQSHAQRQEAAQMXXXXXXXXXXXXLMAEEDPEKQRKMEEQMTKRDAKK 1755
+ I VP HL+ W+++YLE++ + G+L Y N+ GK+KNS+LA AWF H+ LLE +F++VGDDG +KE S G L +E+E +Y LWC+GR CEGML++LR LKR DL++V+A+MMRP S+ +++ V M+DEDMD +VFA+ +K + QKE+QDLS FC DK KS ++ L ++ ++LSE GEVTD ++ ++ + + + ES+HFSDQF GPK + EG KL K+ LLF F +PG+G T M A L+ MV++ ID+ K RL ++ + K+DK R VE++F K +H QRQEAAQ RREEK RAEKER+M EEDPEKQR++EE +R+ KK
Sbjct: 120 ITIVDVPAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNTHRELLESNFTLVGDDGTNKEATSTGKLNQENEHIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFAVGTRKALVRLQKEMQDLSEFCSDKPKSGAKYGLPDSLAILSEMGEVTDGMMDTKMVHFLTHYADKIESVHFSDQFSGPK---IMQEEGQPLKLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDPEKQRRLEEAALRREQKK 467 The following BLAST results are available for this feature:
BLAST of TCONS_00062052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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