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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061987 ID=TCONS_00061987|Name=TCONS_00061987|organism=Clytia hemisphaerica|type=transcript|length=3434bpRun BLAST on NCBI protein sequence of TCONS_00061987-protein >TCONS_00061987-protein ID=TCONS_00061987-protein|Name=TCONS_00061987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp MYIFTAIGILLTFLTGPGQCCFKMFDRQWKPVSLEERTRKADLVVTANILRun BLAST on NCBI transcript from alignment at scaffold_361:410749..420900- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061987 ID=TCONS_00061987|Name=TCONS_00061987|organism=Clytia hemisphaerica|type=transcript|length=10152bp|location=Sequence derived from alignment at scaffold_361:410749..420900- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:410749..420900- >TCONS_00061987 ID=TCONS_00061987|Name=TCONS_00061987|organism=Clytia hemisphaerica|type=CDS|length=19530bp|location=Sequence derived from alignment at scaffold_361:410749..420900- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061987 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 115.546 bits (288), Expect = 8.937e-26 Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 2
Query: 2312 RCKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQFP 2683
C+NGG C +C+C GW G C TA+C+ CLNGG C PNTC C + G +CQ C PCKNGG C+ N C C+ G+ G + Q C C+NGGKC C+C G+ G+ C P
Sbjct: 1397 HCENGGQCLTPDICQCKPGWYGPTCSTALCDPVCLNGGSCNKPNTCLCPNGFFGEHCQNAFCHPPCKNGGHCMRNNVCVCREGYTGRRFQKSICDPTCMNGGKCVGPSTCSCPSGWSGKRCNTP 1520 HSP 2 Score: 108.612 bits (270), Expect = 1.347e-23 Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 2
Query: 2315 CKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQ 2677
CKNGG C +N VC C +G+ G + +IC+ C+NGG+CV P+TC C S G C C CKNGG CI + C+C + +EG +CQ+ C+ +CL GG+C C+C+ + G C+
Sbjct: 1462 CKNGGHCMRNNVCVCREGYTGRRFQKSICDPTCMNGGKCVGPSTCSCPSGWSGKRCNTPICLQKCKNGGECIAPSICHCPSSWEGVRCQIPICNPKCLYGGRCIFPNVCSCRTEYSGVKCE 1582 HSP 3 Score: 106.686 bits (265), Expect = 4.235e-23 Identity = 52/121 (42.98%), Postives = 65/121 (53.72%), Query Frame = 2
Query: 2315 CKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQ 2677
C++GG C +C CP G+ G CET +CN C NGG+C+ P+ C+CK G C C C NGG C NTC C GF G CQ C C NGG C +N C C++G+ G Q
Sbjct: 1366 CQHGGTCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTCSTALCDPVCLNGGSCNKPNTCLCPNGFFGEHCQNAFCHPPCKNGGHCMRNNVCVCREGYTGRRFQ 1486 HSP 4 Score: 98.5969 bits (244), Expect = 1.548e-20 Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 2
Query: 2315 CKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQ 2677
CKN G C K +C+C G G C+ CN C +GG C+A N C C G C+ C+ C+NGG C+ + C CK G+ G C C CLNGG C + C C GF GE+CQ
Sbjct: 1334 CKNHGKCIKPNICQCLPGHGGATCDEEHCNPPCQHGGTCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTCSTALCDPVCLNGGSCNKPNTCLCPNGFFGEHCQ 1454 HSP 5 Score: 98.2117 bits (243), Expect = 2.030e-20 Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 2
Query: 2333 CRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYC 2674
C +C+C G+ G+ C+TA+C+ C N G+C+ PN C+C G+ C C+ PC++GG C+ N C C GF G +C+ C++ C NGG+C C CK G+ G C
Sbjct: 1308 CVAPNICKCKPGYIGSNCQTALCDPDCKNHGKCIKPNICQCLPGHGGATCDEEHCNPPCQHGGTCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTC 1421 The following BLAST results are available for this feature:
BLAST of TCONS_00061987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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