TCONS_00061987-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061987-protein
Unique Name	TCONS_00061987-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	650

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061987-protein ID=TCONS_00061987-protein|Name=TCONS_00061987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp
MYIFTAIGILLTFLTGPGQCCFKMFDRQWKPVSLEERTRKADLVVTANIL
TTSPIPNLENFYSATFEVINILKGWELLKRIHQEKLGPVKLMEPKIIATA
SGFGDPRQCFSHVEVGESYALFLSFDSRRGELLTRYDDIFGAADKLFKRT
ERDILKTLGWEEWSSWSRCSRKCDRGTQRRQRECRKTQTHYTCHGPTEQT
RQCNTFSCQKTYDILKFILDHGKSPFSSWQSGEKNVYKNSINQPSPAKAP
TYLLIEKFPVNSVIHITFKGPVKNTQFLHSIYDANNRLQFGVVVSRYTFA
FTYDKKIDLGTKSRQIVHHTYSFNEDMWYNIALHLKEDEVVFKINCEEEH
RAFVNGDLLKDFDVYGQMFLGADKEEEGEKSLVRVQMSSIMVSSNVDSFN
KQCGTLLLGSLVGESEGESEEGSGRPGVLSGPEDSESGDAGDNEDGDVDE
EAAGSGEKENECRCKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGG
ECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQ
CQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQFPENCTQFITKMVKYS
KPASKIVYFNQEIPCQDNKTKKCLQRRSKSQSYETTGYRQIYVCKESFKT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038857	XLOC_038857	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061987	TCONS_00061987	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt
IPR000742	EGF-like_dom
IPR004850	NtA_dom
IPR013032	EGF-like_CS
IPR013320	ConA-like_dom
IPR008993	TIMP-like_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0043236	laminin binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007213	G-protein coupled acetylcholine receptor signaling pathway
GO:0043113	receptor clustering

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007213	G-protein coupled acetylcholine receptor signaling pathway
biological_process	GO:0043113	receptor clustering
molecular_function	GO:0043236	laminin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 160..209 e-value: 1.1E-6 score: 38.2
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 162..208 e-value: 3.6E-5 score: 23.8
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 157..209 score: 11.928
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 159..208
IPR000742	EGF-like domain	SMART	SM00181	egf_5	coord: 523..552 e-value: 8.8E-5 score: 31.9 coord: 555..584 e-value: 0.2 score: 20.8 coord: 461..488 e-value: 6.3 score: 15.8 coord: 491..520 e-value: 14.0 score: 14.3
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 520..549 score: 9.941
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 552..584 score: 15.162
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 458..488 score: 12.559
None	No IPR available	GENE3D	2.30.90.10		coord: 159..190 e-value: 3.2E-8 score: 33.5
None	No IPR available	GENE3D	2.170.300.10		coord: 479..555 e-value: 7.1E-10 score: 38.7
None	No IPR available	GENE3D	2.60.120.200		coord: 191..407 e-value: 1.3E-8 score: 34.2
None	No IPR available	GENE3D	2.40.50.120		coord: 31..137 e-value: 8.0E-13 score: 47.7
None	No IPR available	GENE3D	2.10.25.10		coord: 556..588 e-value: 1.5E-4 score: 21.3 coord: 445..478 e-value: 3.2E-5 score: 23.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 414..461
IPR004850	NtA (N-terminal agrin) domain	PFAM	PF03146	NtA	coord: 33..126 e-value: 1.8E-8 score: 34.1
IPR013032	EGF-like, conserved site	PROSITE	PS01186	EGF_2	coord: 476..487
IPR013032	EGF-like, conserved site	PROSITE	PS00022	EGF_1	coord: 476..487
IPR013032	EGF-like, conserved site	PROSITE	PS01186	EGF_2	coord: 572..583
IPR013032	EGF-like, conserved site	PROSITE	PS00022	EGF_1	coord: 572..583
IPR013320	Concanavalin A-like lectin/glucanase domain	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 247..376
IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	SUPERFAMILY	50242	TIMP-like	coord: 33..140

Blast

[Close]

BLAST of TCONS_00061987-protein vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 3.571e-27
Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 0

Query:  463 RCKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQFP 586
             C+NGG C    +C+C  GW G  C TA+C+  CLNGG C  PNTC C +   G +CQ   C  PCKNGG C+  N C C+ G+ G + Q   C   C+NGGKC     C+C  G+ G+ C  P
Sbjct: 1397 HCENGGQCLTPDICQCKPGWYGPTCSTALCDPVCLNGGSCNKPNTCLCPNGFFGEHCQNAFCHPPCKNGGHCMRNNVCVCREGYTGRRFQKSICDPTCMNGGKCVGPSTCSCPSGWSGKRCNTP 1520

HSP 2 Score: 109.768 bits (273), Expect = 1.067e-24
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 0

Query:  464 CKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQ 584
            CKNGG C +N VC C +G+ G   + +IC+  C+NGG+CV P+TC C S   G  C    C   CKNGG CI  + C+C + +EG +CQ+  C+ +CL GG+C     C+C+  + G  C+
Sbjct: 1462 CKNGGHCMRNNVCVCREGYTGRRFQKSICDPTCMNGGKCVGPSTCSCPSGWSGKRCNTPICLQKCKNGGECIAPSICHCPSSWEGVRCQIPICNPKCLYGGRCIFPNVCSCRTEYSGVKCE 1582

HSP 3 Score: 108.997 bits (271), Expect = 2.218e-24
Identity = 51/117 (43.59%), Postives = 64/117 (54.70%), Query Frame = 0

Query:  464 CKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKG 580
            C++GG C    +C CP G+ G  CET +CN  C NGG+C+ P+ C+CK    G  C    C   C NGG C   NTC C  GF G  CQ   C   C NGG C +N  C C++G+ G
Sbjct: 1366 CQHGGTCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTCSTALCDPVCLNGGSCNKPNTCLCPNGFFGEHCQNAFCHPPCKNGGHCMRNNVCVCREGYTG 1482

HSP 4 Score: 100.908 bits (250), Expect = 7.092e-22
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 0

Query:  464 CKNGGVCRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYCQ 584
            CKN G C K  +C+C  G  G  C+   CN  C +GG C+A N C C     G  C+   C+  C+NGG C+  + C CK G+ G  C    C   CLNGG C +   C C  GF GE+CQ
Sbjct: 1334 CKNHGKCIKPNICQCLPGHGGATCDEEHCNPPCQHGGTCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTCSTALCDPVCLNGGSCNKPNTCLCPNGFFGEHCQ 1454

HSP 5 Score: 100.523 bits (249), Expect = 9.942e-22
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 0

Query:  470 CRKNGVCRCPKGWDGTLCETAICNNRCLNGGECVAPNTCKCKSLTRGSYCQFHECSLPCKNGGVCIGLNTCNCKTGFEGSQCQLETCSKRCLNGGKCTQNGGCTCKKGFKGEYC 583
            C    +C+C  G+ G+ C+TA+C+  C N G+C+ PN C+C     G+ C    C+ PC++GG C+  N C C  GF G +C+   C++ C NGG+C     C CK G+ G  C
Sbjct: 1308 CVAPNICKCKPGYIGSNCQTALCDPDCKNHGKCIKPNICQCLPGHGGATCDEEHCNPPCQHGGTCLAGNLCTCPYGFVGPRCETMVCNRHCENGGQCLTPDICQCKPGWYGPTC 1421

The following BLAST results are available for this feature:

BLAST of TCONS_00061987-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061987-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VWDE	3.571e-27	44.35	von Willebrand factor D and EGF domain-containing ...	[more]

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TCONS_00061987-protein (polypeptide) - C. hemisphaerica