TCONS_00061985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061985
Unique NameTCONS_00061985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061985 ID=TCONS_00061985|Name=TCONS_00061985|organism=Clytia hemisphaerica|type=transcript|length=1903bp
AAATAGAGTTTGAAAAGCACAGTAATAAAAAATGAGGCTTACCATTTTGG
CGTTGTTGGTGGCGGTTGTTGCTATCGAATGTAAACTAGGTGACATcaag
aaaaatctgaaaaaaggaGAACAAGTTCAAAATGTGTTGAAGGTTTTCAC
TAAAAAGATGGGCAAAGATGATAATGTCTGCAAACCAGTCGCCCTTTATC
CTACTTTTATGCTTCTTCAAAATGCAAGTTTACGAGACCTGATGACACTA
AAGAaatgtttcagcaaaatcgaCCAAAAATGCGCACGCAGACGTCGCCC
GACACTATTACGACGACGAAAGACACGCTCGGAAACAGTCGGCAAATGTC
GATATCGTATTGTCGGAGCTGGAAGCAGTAACGACGGTAAAACTTACTTT
ACACCAATCATCTTCAAGCAAAGAAGAGGTCTTCGAGTCACTGGAAAGAA
TGCTACAATCTGGTTAAGTGAGACACCAAAAACACCTTTCACCAAACTGG
AAGAGGCTTCTGGGTACAGCATTGCAACCTGGGTATATTTGAAAGTAGCC
GTTCACCAAGCAAGAAAAGTTAGGAAAGGTAAAAGATCACCATTTGAAAG
GCTTTTAGATGCATTGAAGAAATcagcaaagaaaaacaagagaagcaAAC
CTTCGACAAAATGGGTCGATCTTTATTTGGTGAACGCTCAATTGGATGTA
AAATCTGAGGTAGCTGAAAATCAACTCGAAATCTTATTCGATAACTTGAA
AGAAAGAATCACAGGGGAAGCGAAGTCTATCGTATTGACCCTTAGCACAC
CGGCTGAGGGAAACGTCGCTCAAATCCTCTCAGAAGAGGGATTCTTAGAC
GCACGTAAAACAGCTCGTTCAGCAAAGAAGGGTTCTGGTGAAAATAGTTC
CGTCTACATCAAAAACTTGCAAAGTATTTACAGCAAGGACACCAAATCCA
ATGGAGTACTATCTTCCTTACTTTACCAATGAAGAGATCGATTCTAACAC
CATCTAAATTAAGTTAAGTCGAGCAACTGTAAAAACGCTTGAAGTCTTTA
GTAGGTGAATAGGACTGGAACTATTTAGTCGAAGTGGGTTAAGCGTTCCT
CAAATCCCACTTGAAGAAGTAAAGAATCTCTATAGGCGATCGAACAAAGA
CATCGTTGATTAAGAACGAAAGACAAGCTTTGAATAAATGAGACGGGtgg
aaataatatttttataccACTAGAACATTGTACCTAGATATATTgtaatt
tgatttgaaattatcaAACTGATTAGACAAACAGTCATTTAAAACTGCTC
TTTAAATATTATTAAGGTCCTCAAAACCGTTTTGTCAGACGATAGGCTAT
TGGCTGAAATATTTCGCGTAGAAGTGTAAAAGAGAAAATGCTCcgttgtg
ttttttttcagtGTTAGGTTagtagtggggtcgtttagcataatttacgg
ggaaaaaattataagatctatccacttttcgccacattttggtctaaaat
tgaccataaatagtatcttctgcgtgaattatcttgagttaggtaatgaa
atcggctatacccgtttaaaagtcttctatatagtttttcgagagctttc
gaatggtatacttgataatgtctgaaaatgagtttgaaattttcaaaaaa
ttttgcccagGGTTTTGGCTGGGGAAAATATAAATTGCccaaaaagggat
gttccaccagtgggattttaggggattttttcctgatgtataagcatcct
atagagaaggtctggagaaagtttcattcccacaaacagcctgtattttt
gtaacacaacCACACCATTAGATTTTCCATGGAATTACTCGATCAGTAGC
CCTTTTTTGAAGTAACAGGCTTTTTTCATGAAAGTCTAGGGCTTTAGGAT
TTG
Run BLAST on NCBI

protein sequence of Putative cnidarian restricted protein

>TCONS_00061985-protein ID=TCONS_00061985-protein|Name=Putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MRLTILALLVAVVAIECKLGDIKKNLKKGEQVQNVLKVFTKKMGKDDNVC
KPVALYPTFMLLQNASLRDLMTLKKCFSKIDQKCARRRRPTLLRRRKTRS
ETVGKCRYRIVGAGSSNDGKTYFTPIIFKQRRGLRVTGKNATIWLSETPK
TPFTKLEEASGYSIATWVYLKVAVHQARKVRKGKRSPFERLLDALKKSAK
KNKRSKPSTKWVDLYLVNAQLDVKSEVAENQLEILFDNLKERITGEAKSI
VLTLSTPAEGNVAQILSEEGFLDARKTARSAKKGSGENSSVYIKNLQSIY
SKDTKSNGVLSSLLYQ
Run BLAST on NCBI

transcript from alignment at scaffold_361:380821..383611-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061985 ID=TCONS_00061985|Name=TCONS_00061985|organism=Clytia hemisphaerica|type=transcript|length=2791bp|location=Sequence derived from alignment at scaffold_361:380821..383611- (Clytia hemisphaerica)
AAATAGAGTTTGAAAAGCACAGTAATAAAAAATGAGGCTTACCATTTTGG
CGTTGTTGGTGGCGGTTGTTGCTATCGAATGTAAACTAGGTGACATCAAG
AAAAATCTGAAAAAAGGAGAACAAGTTCAAAATGTGTTGAAGGTTTTCAC
TAAAAAGATGGGCAAAGATGATAATGTCTGCAAACCAGTCGCCCTTTATC
CTACTGTAAGTTATTGCTTTCCATAAAACAGCTCCCAAAATAATAAAAAA
AATCCTAAATGAGACTATGACAAGAATTATCCCTTCTGTGTTAAAAACAT
AAAAATTTCATCCCCAATAGAAAATTCTATAACAGTTGGAATTTCAACTG
AAAACCTTATCCGAACCGACTGAAAGGGTTCTATCACGCACGAAAAAGAA
ATCTTCAGCTCGTAATAGACATTTCCAAGCATTTATGCCTAGGCTGCATG
CACCCCCTCTGATATGATTTGATATAGGGGATGCGTATCGTCTACATTAT
TTCTGTCCTAACTTACCCTCGTCTTTTTTTTTTCTTTTTTTGATTATGCA
TCAAAAATGATCAAAACGACTTCTTTCTTTATTTGTTCAATCAATGAAAA
ATTATAATTACGAAAGCAATTCATGATATGCACCACTGGAGAGTCTTCTG
AAAACTTTTAAAATTTTCCACCCAATACGTCACTTAAACAATAGAAACAG
TGACGTATTGGGTGGAACAAAAACAGAAAAGTTACATAATTTAGTTAAGT
CGTTGCAGTGGTGCATATCATGAATAACATGTCTTCATTTTTTTCTGCCT
TTGATTGGATGTGACGGAATTATGTAAATTCATGCAACTTTTGGGAAACT
CTCGGATGGGAATTTCATACACGATACGCATCCTCTGTATCAAAATAAAT
TCTGGAGTCCAATTTAGGTTTCGCTCTAGTAGGATGAGTTTTACGCTCGA
AATGAAGAAAGATATAAATGACGTAGCCTACGAACTGATTTGATTCAGAG
ATAAGATCCAGAGTTTGATAGTTTAGAAGTTTGATGTATGCAACAGATAT
ATCCTGTTTTAGTAACAATTTCAAATCTATTAATTTCTTTTAGTTTATGC
TTCTTCAAAATGCAAGTTTACGAGACCTGATGACACTAAAGAAATGTTTC
AGCAAAATCGACCAAAAATGCGCACGCAGACGTCGCCCGACACTATTACG
ACGACGAAAGACACGCTCGGAAACAGTCGGCAAATGTCGATATCGTATTG
TCGGAGCTGGAAGCAGTAACGACGGTAAAACTTACTTTACACCAATCATC
TTCAAGCAAAGAAGAGGTCTTCGAGTCACTGGAAAGAATGCTACAATCTG
GTTAAGTGAGACACCAAAAACACCTTTCACCAAACTGGAAGAGGCTTCTG
GGTACAGCATTGCAACCTGGGTATATTTGAAAGTAGCCGTTCACCAAGCA
AGAAAAGTTAGGAAAGGTAAAAGATCACCATTTGAAAGGCTTTTAGATGC
ATTGAAGAAATCAGCAAAGAAAAACAAGAGAAGCAAACCTTCGACAAAAT
GGGTCGATCTTTATTTGGTGAACGCTCAATTGGATGTAAAATCTGAGGTA
GCTGAAAATCAACTCGAAATCTTATTCGATAACTTGAAAGAAAGAATCAC
AGGGGAAGCGAAGTCTATCGTATTGACCCTTAGCACACCGGCTGAGGGAA
ACGTCGCTCAAATCCTCTCAGAAGAGGGATTCTTAGACGCACGTAAAACA
GCTCGTTCAGCAAAGAAGGGTTCTGGTGAAAATAGTTCCGTCTACATCAA
AAACTTGCAAAGTATTTACAGCAAGGACACCAAATCCAATGGAGTACTAT
CTTCCTTACTTTACCAATGAAGAGATCGATTCTAACACCATCTAAATTAA
GTTAAGTCGAGCAACTGTAAAAACGCTTGAAGTCTTTAGTAGGTGAATAG
GACTGGAACTATTTAGTCGAAGTGGGTTAAGCGTTCCTCAAATCCCACTT
GAAGAAGTAAAGAATCTCTATAGGCGATCGAACAAAGACATCGTTGATTA
AGAACGAAAGACAAGCTTTGAATAAATGAGACGGGTGGAAATAATATTTT
TATACCACTAGAACATTGTACCTAGATATATTGTAATTTGATTTGAAATT
ATCAAACTGATTAGACAAACAGTCATTTAAAACTGCTCTTTAAATATTAT
TAAGGTCCTCAAAACCGTTTTGTCAGACGATAGGCTATTGGCTGAAATAT
TTCGCGTAGAAGTGTAAAAGAGAAAATGCTCCGTTGTGTTTTTTTTCAGT
GTTAGGTTAGTAGTGGGGTCGTTTAGCATAATTTACGGGGAAAAAATTAT
AAGATCTATCCACTTTTCGCCACATTTTGGTCTAAAATTGACCATAAATA
GTATCTTCTGCGTGAATTATCTTGAGTTAGGTAATGAAATCGGCTATACC
CGTTTAAAAGTCTTCTATATAGTTTTTCGAGAGCTTTCGAATGGTATACT
TGATAATGTCTGAAAATGAGTTTGAAATTTTCAAAAAATTTTGCCCAGGG
TTTTGGCTGGGGAAAATATAAATTGCCCAAAAAGGGATGTTCCACCAGTG
GGATTTTAGGGGATTTTTTCCTGATGTATAAGCATCCTATAGAGAAGGTC
TGGAGAAAGTTTCATTCCCACAAACAGCCTGTATTTTTGTAACACAACCA
CACCATTAGATTTTCCATGGAATTACTCGATCAGTAGCCCTTTTTTGAAG
TAACAGGCTTTTTTCATGAAAGTCTAGGGCTTTAGGATTTG

Coding sequence (CDS) from alignment at scaffold_361:380821..383611-

>TCONS_00061985 ID=TCONS_00061985|Name=TCONS_00061985|organism=Clytia hemisphaerica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_361:380821..383611- (Clytia hemisphaerica)
TTTATGCTTCTTCAAAATGCAAGTTTACGAGACCTGATGACACTAAAGAA
ATGTTTCAGCAAAATCGACCAAAAATGCGCACGCAGACGTCGCCCGACAC
TATTACGACGACGAAAGACACGCTCGGAAACAGTCGGCAAATGTCGATAT
CGTATTGTCGGAGCTGGAAGCAGTAACGACGGTAAAACTTACTTTACACC
AATCATCTTCAAGCAAAGAAGAGGTCTTCGAGTCACTGGAAAGAATGCTA
CAATCTGGTTAAGTGAGACACCAAAAACACCTTTCACCAAACTGGAAGAG
GCTTCTGGGTACAGCATTGCAACCTGGGTATATTTGAAAGTAGCCGTTCA
CCAAGCAAGAAAAGTTAGGAAAGGTAAAAGATCACCATTTGAAAGGCTTT
TAGATGCATTGAAGAAATCAGCAAAGAAAAACAAGAGAAGCAAACCTTCG
ACAAAATGGGTCGATCTTTATTTGGTGAACGCTCAATTGGATGTAAAATC
TGAGGTAGCTGAAAATCAACTCGAAATCTTATTCGATAACTTGAAAGAAA
GAATCACAGGGGAAGCGAAGTCTATCGTATTGACCCTTAGCACACCGGCT
GAGGGAAACGTCGCTCAAATCCTCTCAGAAGAGGGATTCTTAGACGCACG
TAAAACAGCTCGTTCAGCAAAGAAGGGTTCTGGTGAAAATAGTTCCGTCT
ACATCAAAAACTTGCAAAGTATTTACAGCAAGGACACCAAATCCAATGGA
GTACTATCTTCCTTACTTTACCAATGAATGAGGCTTACCATTTTGGCGTT
GTTGGTGGCGGTTGTTGCTATCGAATGTAAACTAGGTGACATCAAGAAAA
ATCTGAAAAAAGGAGAACAAGTTCAAAATGTGTTGAAGGTTTTCACTAAA
AAGATGGGCAAAGATGATAATGTCTGCAAACCAGTCGCCCTTTATCCTAC
TTTTATGCTTCTTCAAAATGCAAGTTTACGAGACCTGATGACACTAAAGA
AATGTTTCAGCAAAATCGACCAAAAATGCGCACGCAGACGTCGCCCGACA
CTATTACGACGACGAAAGACACGCTCGGAAACAGTCGGCAAATGTCGATA
TCGTATTGTCGGAGCTGGAAGCAGTAACGACGGTAAAACTTACTTTACAC
CAATCATCTTCAAGCAAAGAAGAGGTCTTCGAGTCACTGGAAAGAATGCT
ACAATCTGGTTAAGTGAGACACCAAAAACACCTTTCACCAAACTGGAAGA
GGCTTCTGGGTACAGCATTGCAACCTGGGTATATTTGAAAGTAGCCGTTC
ACCAAGCAAGAAAAGTTAGGAAAGGTAAAAGATCACCATTTGAAAGGCTT
TTAGATGCATTGAAGAAATCAGCAAAGAAAAACAAGAGAAGCAAACCTTC
GACAAAATGGGTCGATCTTTATTTGGTGAACGCTCAATTGGATGTAAAAT
CTGAGGTAGCTGAAAATCAACTCGAAATCTTATTCGATAACTTGAAAGAA
AGAATCACAGGGGAAGCGAAGTCTATCGTATTGACCCTTAGCACACCGGC
TGAGGGAAACGTCGCTCAAATCCTCTCAGAAGAGGGATTCTTAGACGCAC
GTAAAACAGCTCGTTCAGCAAAGAAGGGTTCTGGTGAAAATAGTTCCGTC
TACATCAAAAACTTGCAAAGTATTTACAGCAAGGACACCAAATCCAATGG
AGTACTATCTTCCTTACTTTACCAATGAATGAGGCTTACCATTTTGGCGT
TGTTGGTGGCGGTTGTTGCTATCGAATGTAAACTAGGTGACATCAAGAAA
AATCTGAAAAAAGGAGAACAAGTTCAAAATGTGTTGAAGGTTTTCACTAA
AAAGATGGGCAAAGATGATAATGTCTGCAAACCAGTCGCCCTTTATCCTA
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038855XLOC_038855Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Putative cnidarian restricted proteinTCONS_00061985-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061985-exon-scaffold_361-1575043694:383407..383611TCONS_00061985-exon-scaffold_361-1575043694:383407..383611Clytia hemisphaericaexon
TCONS_00061985-exon-scaffold_361-1575043694:380821..382518TCONS_00061985-exon-scaffold_361-1575043694:380821..382518Clytia hemisphaericaexon
TCONS_00061985-exon-scaffold_361-1510915933:383407..383611TCONS_00061985-exon-scaffold_361-1510915933:383407..383611Clytia hemisphaericaexon
TCONS_00061985-exon-scaffold_361-1510915933:380821..382518TCONS_00061985-exon-scaffold_361-1510915933:380821..382518Clytia hemisphaericaexon
TCONS_00061985-exon-scaffold_361-1491911889:383407..383611TCONS_00061985-exon-scaffold_361-1491911889:383407..383611Clytia hemisphaericaexon
TCONS_00061985-exon-scaffold_361-1491911889:380821..382518TCONS_00061985-exon-scaffold_361-1491911889:380821..382518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:380821..383611 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0965424	0.048117	0.0920081	0.251761	23.7466	18.2488	10.6091	12.0854	18.9483	22.8139	19.2029	7.74608	44.6133	37.9068	44.5178	42.8125	27.7407	31.43	36.3808	59.0512	11.0803	10.6466	4.81728	5.11335	11.5183	13.9661	0.862695	0.681979	0.166016	0.188595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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