TCONS_00061962 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061962
Unique Name	TCONS_00061962
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2159

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_361:1769136..1776064+
coding sequence from alignment at scaffold_361:1769136..1776064+

transcript sequence

>TCONS_00061962 ID=TCONS_00061962|Name=TCONS_00061962|organism=Clytia hemisphaerica|type=transcript|length=2159bp
ATTTTCTGGAACTGGAACGGAAGGTTTTCAAGGAAATCATTTCATCGTGT
GACCAAGGAATCTAAATCTTGGTATGCGTGACCGAGTATTTataaacaaa
tatggtagaGCTGAAATTTCGAGAATCGTGTGGGAATATTCAAATATGGA
GAATCAGCAGTTTCTTTATAGatgaaattccattgaaaataacTTAAAAG
AGCTATATGCATGAATGAGATCTCAAAGCCATAAATCCCTGCATAGGGAA
AAGAGGAAAAGctatatttctttttgtttgctTGGTGTATTCGTTGCAGT
ATTTATAAGTGCTTATCGTGATCCAAACTTTTGGTCAGACTCAAACCTGA
AGAAGATTGGAAATAATTTTGtgaacaaagttttaaaaaaattctcaaaa
acccAAGAAATAAGACCAAGAAGACCtaaaaagaaagacaaaatcACTGA
TAAAGAGGAAAGATTAATTATGACCTATAAATCTATCAAAGAATTTGCAA
CTGCAAACAAAAAACGTGAAGGTGGAGGTTTCATGGTGCGCAGACCCATT
GGAGATAAAATAGACAATGTAGATCCATTTCTGATGCTTGATCATTTGGG
ACCAACTGTTTATGGGCCAGGTGAAGCAATAGGAGCTCCAGATCATCCTC
ACAGAGGTTTTGAGACGGTTACTTATGTTATTGATGGTGGGATTCATCAC
AAAGATAGTGCAGGTAATGAAGGCAACCTTGGTCCTGGATGGGTGCAGTG
GATGACAGCAGGGAGTGGGGTGGTGCACAGCGAGATGCCCACTGATGAAT
TATTACGCACCGGTGGGCGTATGGAAGGCTTCCAGTTATGGGTGAACCTa
ccaaagaaattcaaaatgagTCCACCTCGATATCAAGATACTCCACCTGA
GAAAATTCCAATCGTCACATCGCCTGACGGTGGTACATCTGTGAAAGTGA
TTGCTGGAGAATGTTTGGGAACCAAAGCAGCAATCGAGACAAAAATCCCA
ATCATGTTTTTGGACATCAAAATAAATCGTGGAAGTTCATTTGATGTTTC
CATTCCGGAAAATACCAACTcgtttgtttatatttggaGAGGGAATGGGT
TTATTGGTTCAGATAAGAAACCAGTCACTATGGGACAGGTTGCTTCATTG
TCGAAAGAAGGAGATGTGTTCCAACTAAATGCTTCTGAAGATAGCGCTCT
CCACGCTTTCGTCATTGCTGGCCAACCTATTGAGAAGCCGATCGCTAGGT
ACGGTCCCTTTGTGATGAACACATATGAAGAAATCCAGCAAGCGTTTGAT
GATTACCGAAACGGTCGACTTGGAAAGATCGATGGTGCAGAAGAAAGATA
TGCAAAAACTGAACAAGctaaacagcaaaataaacaatcGGGAAATTGGA
ATAAACATTAGAGAATttgaatttagattttaatgatATGTTATTAATAA
CAAACTTCGGGGTACACATATTTCTAGTGAAACAATCGAGATGGTGAAAC
AAATGCCAAAAAGGCGACCTTGCTCTAAACTCGTTGGTTTAAAATACTGC
GGCTCAATACTTCCCTGCATTTGATTTTCGaactcaaattattattttaa
gaatAGTCTCGTCTCTGACTCGTACATGTCAATGCCTAGGCTGCTTGCAT
TCACTAaaggattcgtgctccttatatactacctggggttttgtagaggt
ctgcgattcagactagtcaATGCCTGGACTTTGAAAATGTTACaatattt
ttgttgttgtttttttttacttttttgtcgTGAATGATGTGAATTTCAAT
CACTATGGTATCTTCTTCGAATTTAGCGTCTTATTAGAAAAGGTCCAGTC
GATCCTCTTTGTATAACGATGATAGCATTGTACCCAGATTTGTTCTGTTT
TAGTTAGCACAAAATTTGATATCATATACACCTCCTATAAATCGTCTTTG
TTGGTCTTTGTTGGTTTTATTTgcgaaataattttttaaatatcgatgta
gtttttttaactcgtcTTTTCAAAGGATTGTAAAATAGTCGGAATTTTAT
TTATACAACCTATTATTTCcaatttgaacatttttaaaaaatgcaatCCT
TTTTGTTGtattcaattttaaatatttttcgtatTTAACCGTAAAATATT
AAGGATCAT

Run BLAST on NCBI

protein sequence of TCONS_00061962-protein

>TCONS_00061962-protein ID=TCONS_00061962-protein|Name=TCONS_00061962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MRSQSHKSLHREKRKSYISFCLLGVFVAVFISAYRDPNFWSDSNLKKIGN
NFVNKVLKKFSKTQEIRPRRPKKKDKITDKEERLIMTYKSIKEFATANKK
REGGGFMVRRPIGDKIDNVDPFLMLDHLGPTVYGPGEAIGAPDHPHRGFE
TVTYVIDGGIHHKDSAGNEGNLGPGWVQWMTAGSGVVHSEMPTDELLRTG
GRMEGFQLWVNLPKKFKMSPPRYQDTPPEKIPIVTSPDGGTSVKVIAGEC
LGTKAAIETKIPIMFLDIKINRGSSFDVSIPENTNSFVYIWRGNGFIGSD
KKPVTMGQVASLSKEGDVFQLNASEDSALHAFVIAGQPIEKPIARYGPFV
MNTYEEIQQAFDDYRNGRLGKIDGAEERYAKTEQAKQQNKQSGNWNKH

Run BLAST on NCBI

transcript from alignment at scaffold_361:1769136..1776064+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061962 ID=TCONS_00061962|Name=TCONS_00061962|organism=Clytia hemisphaerica|type=transcript|length=6929bp|location=Sequence derived from alignment at scaffold_361:1769136..1776064+ (Clytia hemisphaerica)
ATTTTCTGGAACTGGAACGGAAGGTTTTCAAGGAAATCATTTCATCGTGT
GACCAAGGAATCTAAATCTTGGTATGCGTGACCGAGTATTTataaacaaa
tatggtagaGCTGAAATTTCGAGAATCGTGTGGGAATATTCAAATATGGA
GAATCAGCAGTTTCTTTATAGatgaaattccattgaaaataacTTAAAAG
AGCTATATGCATGAATGAGATCTCAAAGCCATAAATCCCTGCATAGGGAA
AAGAGGAAAAGctatatttctttttgtttgctTGGTGTATTCGTTGCAGT
ATTTATAAGTGCTTATCGTGATCCAAACTTTTGGTCAGACTCAAACCTGA
AGAAGATTGGAAATAATTTTGtgaacaaagttttaaaaaaattctcaaaa
acccAAGAAATAAGACCAAGAAGACCtaaaaagaaagacaaaatcACTGA
TAAAGAGGAAAGATTAATTATGACCTATAAATCTATCAAAGAATTTGCAA
CTGCAAACAAAAAACGTGAAGGTGGAGGTTTCATGGTGCGCAGACCCATT
GGAGATAAAATAGACAATGTAGATCCATTTCTGATGCTTGATCATTTGGG
ACCAACTGTTTATGGGCCAGGTGAAGCAATAGGAGCTCCAGATCATCCTC
ACAGAGGTTTTGAGACGGTTACTTATGTTATTGATGGTAAGTAAGGTTAA
AGTTTCTATTTTTGTTGATTTAACTGGCGGAACCTTTGATTTAGGGAAAA
CGTAAGATACAAACCTCCGAAATGTGATCCTTATCTCTGATCccgtcttt
ctcttttctgactgtctgagattctaagacttagtttctcatttctgact
gagttttcatacctgtcaatcatttgtccatcaatttcgatcagtctaat
tttcgcaccaaGTGgaattcgaaccaccaccaaagaaagaccttcagatt
cggaagccagcgctctatcccttgagccatcgccgcacagcaaaatcacg
caattcataacattttatacatactaaactggcaaaatacgggggtaatg
ttattataatatgggtaaaaatttaaaatgtcggaatgagcaatagccga
tcacattttggaggtttgTATCTTATGTTTTCCTTGATTTAGGCCCATTT
TCAGCTTGGGAAATACCTTCTGTTTCCATTTCAAGAAATGATGTGTGAAT
CATCAATGATTATGATGCAAGCAATCGACAAAAGAAACCCAGTCTAAGTG
GGAAAAAATTTGCCGAATGATTCGGTGATGAATGTCAATAAGTGACGATC
CTCAAGGCGTACTGGAACCGAGTGATATCCATTTCATGCATCAGTGACAG
AACGGATGGTTGATGGTGGTATGGCACGAGCTTGTTGGAACGGTGGAACT
GTGTGATGGGTTTCACGCTGACATTGTCGATTAAGAGCTTGAAAATCAAC
TACTCTGGGGTGAACCATCTGGTTTTCGGACCCAGAAGGCCCGGTGGCAC
CAAGATGTTGGTGTGTTTGGTGGAACCTTTTCTATGACGCCAAGGGAAAC
ATCTGCATCAAGTTGCTTTTTTATCGTATCACGCCAATTAATAGGTACTT
GGGCTGGGTGTGTACAGCTGAGGGAGTGGCGTCAGAACCGAAGGACCTTT
CATCATCGGTAAAGGCTGGTGACTACATTGGTTGAAGGTTGATGGCGCGA
AACGTTCGAGGAGCCATTGTTTCATCTGATCACTGTTCTCCTCTGTTGGC
TCAAAGGGGAGCTCGGAGGGGCGAGGTGGAGGCGCAGTGGCAAGGCAAAC
ATTCACATGCATTGTTGGGTTCAGCTTCTGCAAGAATTTCCTGGTCGGTG
GAGGATGTGATAGATGCTGCCGCTCCGATAGAAGGAAAGTCAGTTGGAAT
TATTTTCATATTCTCCATACCTTGGTAGAAGAAATCAATTGAGTCTGTAA
CATAAATCATTTCTGGAGCTTCAATGTAATGTCCTTGTTTATCATGATCA
CAAAGACGGCTGAAAAATGCACCCAATATATTGATCCCCTCACTGTTGGC
TGAAAAATGCACCCAATATATTGATCACTGTTGGCTGCAAACATTTTCTT
CTTGGCGGGAACTATAAGCGCCTTTTATCAAACCCAGATTTTCGAAATGC
TTTGACCATTAAAGACGATTGGGCTCCAGTGTCTGTGATAACTTTAACTT
TACTGTATTTTACTGGTAAGCTAAGTTCTTTATAGTCGGATTGATTAATG
TAAAGTTTTAAGTTGATTGAAGGTTGACTTTTCGAGTCCTTGATCATCCA
GCCGTAAGAGCTGTCGAAAATGTGATGAAGTAACGGTTAGATATGGGGTT
TCCGAGAGGTGGCATTTGGTGGATTGGAGGATTTATTGCTGAAACTGGTA
GATAAGCCACTAACAACATCGAATAAGGCACTGTTGTTGTGCTTGTTTTT
GTTAGAGTTCTTATCTCTCCAACACTCAATAAATAAGTCAAATTCTCTCA
GTTTCCCATaacgcattttgaatttttgaattacTTTGTCGCAGTTCTTA
CATTTCGATTTTAACTGGAACTTTTTATTGAGGTCAGATTTGATTGGTGG
TTTCTGATGGACAGTTGAAGTGTTAGTAGCATCATGTTGGCCAGTGTAGG
ATGACATTGCACGGACTGTCATCTCCTTGTTTTCAATGAGCGAAATTCAT
TTAGAGTTAGTTTGTCAAGTGTTGAGAACCCAAGAatgttttttctaatt
tcctCATCCCATATACCGGAAATAATAACGTACTTTACAATGTCATCAGT
ATAATCAACATTTCGGTTGCAGTCTTCTGATGGCAAACGCGCACACTTGG
GCTTTACCCTTGACTTGAGCGGCGAAAGACCGAATAGGTTGACCGTGGTC
TTGTTTTAATGATAGCACTTCGGTTTTACAAATACTAGTGGCAGTGGATA
TAACTACAAGGCGACGAATAGCTGCTAGGAGTTGGTTCTCAGTACCATTA
TCAATGTTGTTAATGTCCTTAAATAGGTCATTTTCAAATTCACTATCACA
GCATTTCCACAGTTGTGTCGTGACCTGAGTTGCTGGAATGTCAGTTCCAC
GCTTAAAAAGATTCCACTTCTTTGTGAATGTGTTCCACTCCTCGTCAGTA
GTACCCCTTGTAATAGTAAGGTCTATCGGCTTTTGTTTGTCGGAGGGTGG
AGTGGCAGGAGTGGAATGCGCCAGAGCAAGGAGGTTCAGATGTGCTGCGG
CCGCGATAGCATCATTCATGGTATGCAgaggggttctaggtccccccaga
aaatttagccccccccctaaaaattaGGTACCCCCTGACATAAAACCTCT
CAGCCCCCAGTAGAATGACCTAAGGTAAGAAGGATCAACACagggggggg
gtgaagcagttagtacaagacatcatgccggttagtaccgtagtggtgtg
ccatatgaattggataaaatcacttagtactcagatgtactaactgcaaa
aaagggtggtcccctgctaaaaatttgccaaattttggtactaactGTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGTTCTTATC
TCTCCAACACTCAATACATAAGTCAAATTCTCTCAGTTTCCCATaacgca
ttttgaatttttgaattacTTTGTCGCAGTTCTTACATTTCGATTTTAAC
TGGAGCATTTTATTGAGGTCAGATTTGATTGTTGGTTTCTGATGGACAGC
TGAAGTGTTAGTAGCATCATGTTGGCCATCATTGCACGGACTGCCATCTC
CTTGTTTTCAATGAGCGAAATCGTTTCATTTAGAGTTAGTTTGTCAAGTG
TTGAGAACCCAAGAatgttttttctaatttcctCATCACATATACCGGAA
ATAATAACGTACTTTACAATGTCATCAGTATAATCAACATTTTGGTTGCA
GTCTGCTGATGGCCACTCCTTGGCAAACGCGCACACTTGGGCTTTACCCT
TGACTTGGGCGGCGAAAGACCGAATAGGTTGACCGTGGTCTTGTTTTAAT
GATAGCACTTCGGTTTTACGAATACTAGTGGCAGTGGATATAACTGCAAG
GCAACGAATAGCTGCTAGGAGTTGGTTCTCAGTTACGTTTTCAATGTTGT
TAATGTCCTTAAAAAATAGGTCATTTTCAAGTTCACTATCACAGCATTTC
CACAGTTGTGTCGTGACCTGAGTTGCTGGAATGTCAGTTCCACGCTTAAA
AAGATTCCACTTCTTTCTGAATGTGTTCCACTCCTCGTCAGTAGTACCCC
TTGTAATAGTAGGTCTATCGGCTTTTGTTTGTCGGAGGGTGGAGTGGCAG
GAGTGGAATGCGCCAGAGCATGGAGGTTCAGCTGCGCTGCGGCCGCGATA
GCATCATTGTCATCAGTTTGATATTCACAGATTGGACGGTTGATCACAGG
TGTTTTTCTTCTCCAATAAGTTCAAACATGAGCAAGTATTGCGTTCATTA
GACCTTTTATTAGTCAATAAATATTTGaactaaaataacaaaataagaaa
tataTGAGATACTCATACAAAATTTAAAGGGGCTGTACAAGTTAATACCT
TTTTTTATTCAGGatgccatgttgaataattaaaaactccagcattaaaG
CAATATACATTAATTCATAATTGTTTAAAACAATGTGTGTAAAATTCCAT
TTCATCAGCTGAGAAATGACTTTcttcttttagaatttttgaatgttttc
aaaattctaaaaacttatTAAGAACATATTTTCAAACCCTTTATAATTCG
ACTTTTTCAGGTGGGATTCATCACAAAGATAGTGCAGGTAATGAAGGCAA
CCTTGGTCCTGGATGGGTGCAGTGGATGACAGCAGGGAGTGGGGTGGTGC
ACAGCGAGATGCCCACTGATGAATTATTACGCACCGGTGGGCGTATGGAA
GGCTTCCAGTTATGGGTGAACCTaccaaagaaattcaaaatgagTCCACC
TCGATATCAAGATACTCCACCTGAGAAAATTCCAATCGTCACATCGCCTG
GTAATCAGTTCGACATTCATAactttctttgaaataaaaaggttCCCTCC
CAATTGACTTCTTTTAAAACCTTGGTCTTATCTATAACCGACATCCTTAA
GGGGGACAAATGGCGCTACATCTTGAATATTTAAGAGGTACcccttttta
aaaagatttcaatTAAAGAATTTGTTTGGCCACTATACTATTGAGAAAAC
TGCCTCCAGGGTAATTAAATCCTCCAGCGtcacgtccccgtcggtcgtca
aggcCCCCGGAAATCCCGCATGTAATATGAATGTGAGTCCAGTTAGGTCT
GTTTCTCATTTCTTACTATTGTCAAATActcatcaaaatttcaacatctt
tttTAGACGGTGGTACATCTGTGAAAGTGATTGCTGGAGAATGTTTGGGA
ACCAAAGCAGCAATCGAGACAAAAATCCCAATCATGTTTTTGGACATCAA
AATAAATCGTGGAAGTTCATTTGATGTTTCCATTCCGGAAAATACCAACT
cgtttgtttatatttggaGAGGGAATGGGTTTATTGGTTCAGATAAGAAA
CCAGTCACTATGGGACAGGTAAGGCTAAGACTTTTAACCAAATATTTCAT
CCATTTTTTGATGACTGATATATTTATCAGCTACTAACGCTTTGTTGATT
CTTTTTCGACTTTTGAGAAATATATTTTGTCTGACCTTTTATGCGCCATC
ACTCTTAAATTTCTTCTAACTCTTTTTTGCACTTTATTAAAGGATTTTTT
GGAACTGACAGATTGATACTTGGTTATGTATTATCtttgtaaaatttttc
tttactagGTTGCTTCATTGTCGAAAGAAGGAGATGTGTTCCAACTAAAT
GCTTCTGAAGATAGCGCTCTCCACGCTTTCGTCATTGCTGGCCAACCTAT
TGAGAAGCCGATCGCTAGGTACGGTCCCTTTGTGATGAACACATATGAAG
AAATCCAGCAAGCGTTTGATGATTACCGAAACGGTCGACTTGGAAAGATC
GATGGTGCAGAAGAAAGATATGCAAAAACTGAACAAGctaaacagcaaaa
taaacaatcGGGAAATTGGAATAAACATTAGAGAATttgaatttagattt
taatgatATGTTATTAATAACAAACTTCGGGGTACACATATTTCTAGTGA
AACAATCGAGATGGTGAAACAAATGCCAAAAAGGCGACCTTGCTCTAAAC
TCGTTGGTTTAAAATACTGCGGCTCAATACTTCCCTGCATTTGATTTTCG
aactcaaattattattttaagaatAGTCTCGTCTCTGACTCGTACATGTC
AATGCCTAGGCTGCTTGCATTCACTAaaggattcgtgctccttatatact
acctggggttttgtagaggtctgcgattcagactagtcaATGCCTGGACT
TTGAAAATGTTACaatatttttgttgttgtttttttttacttttttgtcg
TGAATGATGTGAATTTCAATCACTATGGTATCTTCTTCGAATTTAGCGTC
TTATTAGAAAAGGTCCAGTCGATCCTCTTTGTATAACGATGATAGCATTG
TACCCAGATTTGTTCTGTTTTAGTTAGCACAAAATTTGATATCATATACA
CCTCCTATAAATCGTCTTTGTTGGTCTTTGTTGGTTTTATTTgcgaaata
attttttaaatatcgatgtagtttttttaactcgtcTTTTCAAAGGATTG
TAAAATAGTCGGAATTTTATTTATACAACCTATTATTTCcaatttgaaca
tttttaaaaaatgcaatCCTTTTTGTTGtattcaattttaaatatttttc
gtatTTAACCGTAAAATATTAAGGATCAT

Coding sequence (CDS) from alignment at scaffold_361:1769136..1776064+

>TCONS_00061962 ID=TCONS_00061962|Name=TCONS_00061962|organism=Clytia hemisphaerica|type=CDS|length=4788bp|location=Sequence derived from alignment at scaffold_361:1769136..1776064+ (Clytia hemisphaerica)
ATGAGATCTCAAAGCCATAAATCCCTGCATAGGGAAAAGAGGAAAAGcta
tatttctttttgtttgctTGGTGTATTCGTTGCAGTATTTATAAGTGCTT
ATCGTGATCCAAACTTTTGGTCAGACTCAAACCTGAAGAAGATTGGAAAT
AATTTTGtgaacaaagttttaaaaaaattctcaaaaacccAAGAAATAAG
ACCAAGAAGACCtaaaaagaaagacaaaatcACTGATAAAGAGGAAAGAT
TAATTATGACCTATAAATCTATCAAAGAATTTGCAACTGCAAACAAAAAA
CGTGAAGGTGGAGGTTTCATGGTGCGCAGACCCATTGGAGATAAAATAGA
CAATGTAGATCCATTTCTGATGCTTGATCATTTGGGACCAACTGTTTATG
GGCCAGGTGAAGCAATAGGAGCTCCAGATCATCCTCACAGAGGTTTTGAG
ACGGTTACTTATGTTATTGATGGTGGGATTCATCACAAAGATAGTGCAGG
TAATGAAGGCAACCTTGGTCCTGGATGGGTGCAGTGGATGACAGCAGGGA
GTGGGGTGGTGCACAGCGAGATGCCCACTGATGAATTATTACGCACCGGT
GGGCGTATGGAAGGCTTCCAGTTATGGGTGAACCTaccaaagaaattcaa
aatgagTCCACCTCGATATCAAGATACTCCACCTGAGAAAATTCCAATCG
TCACATCGCCTGACGGTGGTACATCTGTGAAAGTGATTGCTGGAGAATGT
TTGGGAACCAAAGCAGCAATCGAGACAAAAATCCCAATCATGTTTTTGGA
CATCAAAATAAATCGTGGAAGTTCATTTGATGTTTCCATTCCGGAAAATA
CCAACTcgtttgtttatatttggaGAGGGAATGGGTTTATTGGTTCAGAT
AAGAAACCAGTCACTATGGGACAGGTTGCTTCATTGTCGAAAGAAGGAGA
TGTGTTCCAACTAAATGCTTCTGAAGATAGCGCTCTCCACGCTTTCGTCA
TTGCTGGCCAACCTATTGAGAAGCCGATCGCTAGGTACGGTCCCTTTGTG
ATGAACACATATGAAGAAATCCAGCAAGCGTTTGATGATTACCGAAACGG
TCGACTTGGAAAGATCGATGGTGCAGAAGAAAGATATGCAAAAACTGAAC
AAGctaaacagcaaaataaacaatcGGGAAATTGGAATAAACATTAGATG
AGATCTCAAAGCCATAAATCCCTGCATAGGGAAAAGAGGAAAAGctatat
ttctttttgtttgctTGGTGTATTCGTTGCAGTATTTATAAGTGCTTATC
GTGATCCAAACTTTTGGTCAGACTCAAACCTGAAGAAGATTGGAAATAAT
TTTGtgaacaaagttttaaaaaaattctcaaaaacccAAGAAATAAGACC
AAGAAGACCtaaaaagaaagacaaaatcACTGATAAAGAGGAAAGATTAA
TTATGACCTATAAATCTATCAAAGAATTTGCAACTGCAAACAAAAAACGT
GAAGGTGGAGGTTTCATGGTGCGCAGACCCATTGGAGATAAAATAGACAA
TGTAGATCCATTTCTGATGCTTGATCATTTGGGACCAACTGTTTATGGGC
CAGGTGAAGCAATAGGAGCTCCAGATCATCCTCACAGAGGTTTTGAGACG
GTTACTTATGTTATTGATGGTGGGATTCATCACAAAGATAGTGCAGGTAA
TGAAGGCAACCTTGGTCCTGGATGGGTGCAGTGGATGACAGCAGGGAGTG
GGGTGGTGCACAGCGAGATGCCCACTGATGAATTATTACGCACCGGTGGG
CGTATGGAAGGCTTCCAGTTATGGGTGAACCTaccaaagaaattcaaaat
gagTCCACCTCGATATCAAGATACTCCACCTGAGAAAATTCCAATCGTCA
CATCGCCTGACGGTGGTACATCTGTGAAAGTGATTGCTGGAGAATGTTTG
GGAACCAAAGCAGCAATCGAGACAAAAATCCCAATCATGTTTTTGGACAT
CAAAATAAATCGTGGAAGTTCATTTGATGTTTCCATTCCGGAAAATACCA
ACTcgtttgtttatatttggaGAGGGAATGGGTTTATTGGTTCAGATAAG
AAACCAGTCACTATGGGACAGGTTGCTTCATTGTCGAAAGAAGGAGATGT
GTTCCAACTAAATGCTTCTGAAGATAGCGCTCTCCACGCTTTCGTCATTG
CTGGCCAACCTATTGAGAAGCCGATCGCTAGGTACGGTCCCTTTGTGATG
AACACATATGAAGAAATCCAGCAAGCGTTTGATGATTACCGAAACGGTCG
ACTTGGAAAGATCGATGGTGCAGAAGAAAGATATGCAAAAACTGAACAAG
ctaaacagcaaaataaacaatcGGGAAATTGGAATAAACATTAGATGAGA
TCTCAAAGCCATAAATCCCTGCATAGGGAAAAGAGGAAAAGctatatttc
tttttgtttgctTGGTGTATTCGTTGCAGTATTTATAAGTGCTTATCGTG
ATCCAAACTTTTGGTCAGACTCAAACCTGAAGAAGATTGGAAATAATTTT
GtgaacaaagttttaaaaaaattctcaaaaacccAAGAAATAAGACCAAG
AAGACCtaaaaagaaagacaaaatcACTGATAAAGAGGAAAGATTAATTA
TGACCTATAAATCTATCAAAGAATTTGCAACTGCAAACAAAAAACGTGAA
GGTGGAGGTTTCATGGTGCGCAGACCCATTGGAGATAAAATAGACAATGT
AGATCCATTTCTGATGCTTGATCATTTGGGACCAACTGTTTATGGGCCAG
GTGAAGCAATAGGAGCTCCAGATCATCCTCACAGAGGTTTTGAGACGGTT
ACTTATGTTATTGATGGTGGGATTCATCACAAAGATAGTGCAGGTAATGA
AGGCAACCTTGGTCCTGGATGGGTGCAGTGGATGACAGCAGGGAGTGGGG
TGGTGCACAGCGAGATGCCCACTGATGAATTATTACGCACCGGTGGGCGT
ATGGAAGGCTTCCAGTTATGGGTGAACCTaccaaagaaattcaaaatgag
TCCACCTCGATATCAAGATACTCCACCTGAGAAAATTCCAATCGTCACAT
CGCCTGACGGTGGTACATCTGTGAAAGTGATTGCTGGAGAATGTTTGGGA
ACCAAAGCAGCAATCGAGACAAAAATCCCAATCATGTTTTTGGACATCAA
AATAAATCGTGGAAGTTCATTTGATGTTTCCATTCCGGAAAATACCAACT
cgtttgtttatatttggaGAGGGAATGGGTTTATTGGTTCAGATAAGAAA
CCAGTCACTATGGGACAGGTTGCTTCATTGTCGAAAGAAGGAGATGTGTT
CCAACTAAATGCTTCTGAAGATAGCGCTCTCCACGCTTTCGTCATTGCTG
GCCAACCTATTGAGAAGCCGATCGCTAGGTACGGTCCCTTTGTGATGAAC
ACATATGAAGAAATCCAGCAAGCGTTTGATGATTACCGAAACGGTCGACT
TGGAAAGATCGATGGTGCAGAAGAAAGATATGCAAAAACTGAACAAGcta
aacagcaaaataaacaatcGGGAAATTGGAATAAACATTAGATGAGATCT
CAAAGCCATAAATCCCTGCATAGGGAAAAGAGGAAAAGctatatttcttt
ttgtttgctTGGTGTATTCGTTGCAGTATTTATAAGTGCTTATCGTGATC
CAAACTTTTGGTCAGACTCAAACCTGAAGAAGATTGGAAATAATTTTGtg
aacaaagttttaaaaaaattctcaaaaacccAAGAAATAAGACCAAGAAG
ACCtaaaaagaaagacaaaatcACTGATAAAGAGGAAAGATTAATTATGA
CCTATAAATCTATCAAAGAATTTGCAACTGCAAACAAAAAACGTGAAGGT
GGAGGTTTCATGGTGCGCAGACCCATTGGAGATAAAATAGACAATGTAGA
TCCATTTCTGATGCTTGATCATTTGGGACCAACTGTTTATGGGCCAGGTG
AAGCAATAGGAGCTCCAGATCATCCTCACAGAGGTTTTGAGACGGTTACT
TATGTTATTGATGGTGGGATTCATCACAAAGATAGTGCAGGTAATGAAGG
CAACCTTGGTCCTGGATGGGTGCAGTGGATGACAGCAGGGAGTGGGGTGG
TGCACAGCGAGATGCCCACTGATGAATTATTACGCACCGGTGGGCGTATG
GAAGGCTTCCAGTTATGGGTGAACCTaccaaagaaattcaaaatgagTCC
ACCTCGATATCAAGATACTCCACCTGAGAAAATTCCAATCGTCACATCGC
CTGACGGTGGTACATCTGTGAAAGTGATTGCTGGAGAATGTTTGGGAACC
AAAGCAGCAATCGAGACAAAAATCCCAATCATGTTTTTGGACATCAAAAT
AAATCGTGGAAGTTCATTTGATGTTTCCATTCCGGAAAATACCAACTcgt
ttgtttatatttggaGAGGGAATGGGTTTATTGGTTCAGATAAGAAACCA
GTCACTATGGGACAGGTTGCTTCATTGTCGAAAGAAGGAGATGTGTTCCA
ACTAAATGCTTCTGAAGATAGCGCTCTCCACGCTTTCGTCATTGCTGGCC
AACCTATTGAGAAGCCGATCGCTAGGTACGGTCCCTTTGTGATGAACACA
TATGAAGAAATCCAGCAAGCGTTTGATGATTACCGAAACGGTCGACTTGG
AAAGATCGATGGTGCAGAAGAAAGATATGCAAAAACTGAACAAGctaaac
agcaaaataaacaatcGGGAAATTGGAATAAACATTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038844	XLOC_038844	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061962-exon-scaffold_361-1491911889:1769136..1769821	TCONS_00061962-exon-scaffold_361-1491911889:1769136..1769821	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1510915933:1769136..1769821	TCONS_00061962-exon-scaffold_361-1510915933:1769136..1769821	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1575043694:1769136..1769821	TCONS_00061962-exon-scaffold_361-1575043694:1769136..1769821	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1491911889:1773996..1774235	TCONS_00061962-exon-scaffold_361-1491911889:1773996..1774235	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1510915933:1773996..1774235	TCONS_00061962-exon-scaffold_361-1510915933:1773996..1774235	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1575043694:1773996..1774235	TCONS_00061962-exon-scaffold_361-1575043694:1773996..1774235	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1491911889:1774592..1774803	TCONS_00061962-exon-scaffold_361-1491911889:1774592..1774803	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1510915933:1774592..1774803	TCONS_00061962-exon-scaffold_361-1510915933:1774592..1774803	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1575043694:1774592..1774803	TCONS_00061962-exon-scaffold_361-1575043694:1774592..1774803	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1491911889:1775044..1776064	TCONS_00061962-exon-scaffold_361-1491911889:1775044..1776064	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1510915933:1775044..1776064	TCONS_00061962-exon-scaffold_361-1510915933:1775044..1776064	Clytia hemisphaerica	exon
TCONS_00061962-exon-scaffold_361-1575043694:1775044..1776064	TCONS_00061962-exon-scaffold_361-1575043694:1775044..1776064	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061962-protein	TCONS_00061962-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_361	supercontig	scaffold_361:1769136..1776064 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.90306	4.23982	5.50465	5.81572	43.6973	32.9461	49.014	48.8767	39.6017	44.0291	60.6803	34.3326	34.708	23.9682	21.4004	28.2499	24.4119	23.2643	28.46	62.6104	19.1985	23.8992	24.5725	24.8635	28.2525	30.8588	31.9286	61.5601	30.5181	30.2289

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008778	Pirin_C_dom
IPR014710	RmlC-like_jellyroll
IPR012093	Pirin
IPR003829	Pirin_N_dom
IPR011051	RmlC_Cupin

Blast

[Close]

BLAST of TCONS_00061962 vs. Swiss-Prot (Human)
Match: PIR (Pirin OS=Homo sapiens GN=PIR PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.114e-60
Identity = 116/288 (40.28%), Postives = 170/288 (59.03%), Query Frame = 2

Query:  473 TYKSIKEFATANKKREGGGFMVRRPIGD-KIDNVDPFLMLDHLGPTVYGPGEAIGAPDHPHRGFETVTYVIDGG-IHHKDSAGNEGNLGPGWVQWMTAGSGVVHSEMPTDELLRTGGRMEGFQLWVNLPKKFKMSPPRYQDTPPEKIPIVTSPDGGTSVKVIAGECLGTKAAIETKIPIMFLDIKINRGSSFDVSIPENTNSFVYIWRGNGFIGSD--KKPVTMGQVASLSKEGDVFQLNASEDSALHAFVIAGQPIEKPIARYGPFVMNTYEEIQQAFDDYRNGRLG 1324
            + K +     + ++ EG G  VRR IG  ++ N+DPFL+ D      +  G   G PDHPHRGFETV+Y+++GG + H+D  G+ G + PG +QWMTAG G++H+EMP  E         G QLWVNL    KM  P+YQ+   E+IP  +    G +V VI+GE LG K+ + T+ P ++LD K++ G+     IP+   SF+Y   G+ +IG D  ++ +     A L  EGD  Q+   +    H  +IAG+P+ +P+ ++GPFVMNT EEI QA  D+RN + G
Sbjct:    3 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDE-----FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSE-----EPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSK--DGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLG-EGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNG 277

The following BLAST results are available for this feature:

BLAST of TCONS_00061962 vs. Swiss-Prot (Human)

BLAST of TCONS_00061962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PIR	1.114e-60	40.28	Pirin OS=Homo sapiens GN=PIR PE=1 SV=1	[more]

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TCONS_00061962 (transcript) - C. hemisphaerica